Relationships between chlorophyll a, bacteria, ATP, POC and respiration rates in the Changjiang Estuary and the plume

Bacteria abundance, chlorophyll a, ATP and POC concentrations and respiration rates of microorganisms in the Changjiang Estuary and the plume were determined in July 1986. The high values of bacteria abundance occurred in the river mouth in association with suspended matter. It is assumed that bacteria were the major contributor to ATP and the main consumer of dissolved oxygen, and that the relationship between ATP and POC was present in that area. In the dilution zone (salinity; 25-30), instead of bacteria, phytoplankton was the major contributor to ATP and respiration rates, due to diatom bloom. Close relationships between Chi a and ATP, and ATP and POC were observed. Contribution of microbial carbon to POC was also estimated.     

Holocene reef growth in Torres Strait

The platform and fringing reefs of Torres Strait are morphologically similar to reefs of the northern Great Barrier Reef to the south, except that several are elongated in the direction of the strong tidal currents between the Coral Sea and the Gulf of Carpentaria. Surface and subsurface investigations and radiocarbon dating on Yam, Warraber and Hammond Islands reveal that the initiation and mode of Holocene reef growth reflect antecedent topography and sea-level history. On the granitic Yam Island, fringing reefs have established in some places over a Pleistocene limestone at about 6 m depth around 7000 years BP. Emergent Holocene microatolls of Porites sp. indicate that the reefs have prograded seawards while sea level has fallen gradually from at least 0.8 m above present about 5800 years BP. On the Warraber Island reef platform drilling near the centre indicated a Pleistocene limestone foundation at a depth of about 6 m over which reefs established around 6700 years BP. Reef growth lagged behind that on Yam Island. Microatolls on the mature reef flat indicate that the reef reached sea level around 5300 years BP when the sea was around 0.8–1.0 m above present. On the reef flat on the western side of Hammond Island bedrock was encountered at 7–8 m depth, overlain by terrigenous mud. A progradational reef sequence of only 1–2 m thickness has built seaward over these muds, as sea level has fallen over the past 5800 years. Reef-flat progradation on these reefs is interpreted to have occurred by a series of stepwise buildouts marked by lines of microatolls parallel to the reef crest, marking individual coalescing coral heads. Detrital infill has occurred between these. This pattern of reef progradation is consistent with the radiocarbon dating results from these reefs, and with seismic investigations on the Torres Reefs.     

Tectonics of an extinct ridge-transform intersection,Drake Passage (Antarctica)

New swath bathymetric, multichannel seismic and magnetic data reveal the complexity of the intersection between the extinct West Scotia Ridge (WSR) and the Shackleton Fracture Zone (SFZ), a first-order NW-SE trending high-relief ridge cutting across the Drake Passage. The SFZ is composed of shallow, ridge segments and depressions, largely parallel to the fracture zone with an `en echelon' pattern in plan view. These features are bounded by tectonic lineaments, interpreted as faults. The axial valley of the spreading center intersects the fracture zone in a complex area of deformation, where N120° E lineaments and E–W faults anastomose on both sides of the intersection. The fracture zone developed within an extensional regime, which facilitated the formation of oceanic transverse ridges parallel to the fracture zone and depressions attributed to pull-apart basins, bounded by normal and strike-slip faults.On the multichannel seismic (MCS) profiles, the igneous crust is well stratified, with numerous discontinuous high-amplitude reflectors and many irregular diffractions at the top, and a thicker layer below. The latter has sparse and weak reflectors, although it locally contains strong, dipping reflections. A bright, slightly undulating reflector observed below the spreading center axial valley at about 0.75 s (twt) depth in the igneous crust is interpreted as an indication of the relict axial magma chamber. Deep, high-amplitude subhorizontal and slightly dipping reflections are observed between 1.8 and 3.2 s (twt) below sea floor, but are preferentially located at about 2.8–3.0 s (twt) depth. Where these reflections are more continuous they may represent the Mohorovicic seismic discontinuity. More locally, short (2–3 km long), very high-amplitude reflections observed at 3.6 and 4.3 s (twt) depth below sea floor are attributed to an interlayered upper mantle transition zone. The MCS profiles also show a pattern of regularly spaced, steep-inclined reflectors, which cut across layers 2 and 3 of the oceanic crust. These reflectors are attributed to deformation under a transpressional regime that developed along the SFZ, shortly after spreading ceased at the WSR. Magnetic anomalies 5 to 5 E may be confidently identified on the flanks of the WSR. Our spreading model assumes slow rates (ca. 10–20 mm/yr), with slight asymmetries favoring the southeastern flank between 5C and 5, and the northwestern flank between 5 and extinction. The spreading rate asymmetry means that accretion was slower during formation of the steeper, shallower, southeastern flank than of the northwestern flank.     

Large aperture seismic imaging at a convergent margin: Techniques and results from the Costa Rica seismogenic zone

In March and April 1995 a cooperative German, Costa Rican, and United States research team recorded onshore-offshore seismic data sets along the Pacific margin of Costa Rica using the R/V Ewing. Off the Nicoya Peninsula we used a linear array of ocean bottom seismometers and hydrophones (OBS/H) with onshore seismometers extending across much of the isthmus. In the central area we deployed an OBS/H areal array consisting of 30 instruments over a 9 km by 35-km area and had land stations on the Nicoya Peninsula adjacent to this marine array and also extending northeast on the main Costa Rican landmass. Our goal in these experiments was to determine the crustal velocity structure along different portions of this convergent margin and to use the dense instrument deployments to create migrated reflection images of the plate boundary zone and the subducting Cocos Plate. Our specific goal in the central area was to determine whether a subducted seamount is present at the location of the 1990, M 7 earthquake off the Nicoya Peninsula and can thus be linked to its nucleation. Subsequently we have processed the data to improve reflection signals, used the data to calculate crustal velocity models, and developed several wide-aperture migration techniques, based on a Kirchhoff algorithm, to produce reflection images. Along the northern transect we used the ocean bottom data to construct a detailed crustal velocity model, but reflections from the plate boundary and top and bottom of the subducting Cocos plate are difficult to identify and have so far produced poor images. In contrast, the land stations along this same transect recorded clear reflections from the top of the subducting plate or plate boundary, within the seismogenic zone, and we have constructed a clear image from this reflector beneath the Nicoya shelf. Data from the 3-D seismic experiment suffer from high-amplitude, coherent noise (arrivals other than reflections), and we have tried many techniques to enhance the signal to noise ratio of reflected arrivals. Due to the noise, an apparent lack of strong reflections from the plate boundary zone, and probable structural complexity, the resulting 3-D images only poorly resolve the top of the subducting Cocos Plate. The images are not able to provide compelling evidence of whether there is a subducting seamount at the 1990 earthquake hypocenter. Our results do show that OBS surveys are capable of creating images of the plate boundary zone and the subducting plate well into the seismogenic zone if coherent reflections are recorded at 1.8 km instrument spacing (2-D) and 5 km inline by 1 km crossline spacing for 3-D acquisition. However, due to typical high amplitude coherent noise, imaging results may be poorer than expected, especially in unfavorable geologic settings such as our 3-D survey area. More effective noise reduction in acquisition, possibly with the use of vertical hydrophone arrays, and in processing, with advanced multiple removal and possibly depth filtering, is required to achieve the desired detailed images of the seismogenic plate boundary zone.     

Biochemical and histochemical responses to environmental contaminants in clam, Tapes philippinarum, transplanted to different polluted areas of Venice Lagoon, Italy.

In this study the clam, Tapes philippinarum, a filter-feeding bivalve living in soft bottoms, was used to investigate the water/sediment pollution in Venice Lagoon (Venice, Italy), a heavily urbanised and industrialised area. To this end, clams collected from indigenous populations in a clean farming area (Val Dogà) were transplanted into a relatively low contaminated site (Palude della Rosa) and in a heavily polluted area (Porto Marghera), for 5 weeks. A range of possible induced stress indices were measured, on the basis of potential toxicity mechanisms, including specific enzymatic activities [Bap hydroxylase and NADPH cytochrome c reductase, superoxide dismutase, catalase, glutathione peroxidase and propionaldehyde dehydrogenase (PDH)] and general cellular responses (lysosomal latency). Moreover, chemical analyses (polychlorinated biphenyls, polycyclic aromatic hydrocarbon, DDTs) were carried out on sediments and animal tissues at the beginning and end of the transplantation experiments. The chemical results show an active bio-accumulation activity from sediment in clams translocated to the most polluted area. Correspondingly, biological data indicate marked effects on PDH activity and latency in T. philippinarum from the same site. In contrast, no similar pattern has been observed in the other considered indices, possibly due to antagonistic effects of the complex contaminant mixture present in the environment.     

Relation between responses in the neutral red retention test and the comet assay and life history parameters of Daphnia magna.

Responses of the neutral red retention (NRR) assay as test for lysosomal stability and the comet assay as test for DNA integrity were measured in the water flea, Daphnia magna, and compared with mortality and effects on population growth rate during short- or long-term exposure to seven different toxicants. The NRR test and the comet assay were performed with fresh preparations of pieces of tissue from the digestive tract or with cell preparations from whole daphnias. Five toxicants caused responses of the NRR test or the comet assay after short-term exposure at concentrations below the acute toxicity level. Preliminary results of long-term exposure experiments suggest that these biomarker responses can be related to chronic effects on survival and/or reproduction of D. magna. This type of research should provide the basis for future use of the NRR test and the comet assay as early warning biomarkers for effects of toxicants on Daphnia populations.     

The requirements for stable metallothionein clusters examined using synthetic lobster domains.

Metallothioneins (MTs) are small, cysteine-rich proteins which detoxify xenobiotic metals such as cadmium (Cd) and mercury (Hg). In crustaceans and mammals they consist of two independent domains which are folded around metal-thiolate clusters. MT clusters of different origins, exhibiting distinct, highly conserved cysteine positions on their sequences, show differences in metal-cysteine coordination and reactivity. Lobster-MT, containing two Cd3 beta domains, is an important model for structure-function relationships among the clusters. The influence of (1) the position of the cysteine residues and (2) steric and electrostatic effects of neighboring amino acids on the folding and stability of MT cluster were investigated. Thus, the native lobster beta C and beta N domains (each having nine cysteines and binding three M2+ ions) and a modified domain Cd3 beta C-->N, in which the cysteines of the C-terminal domain were relocated to match the positions of those in the N-terminal domain, were chemically prepared and characterized. The synthetic native domains (Cd3 beta C and Cd3 beta N) were found to exhibit spectroscopic properties, metal-binding affinities and kinetic reactivity similar to the holo-protein. However, the modified Cd3 beta C-->N domain was unusually reactive and in the presence of Chelex, metal chelation resin, aggregated to a Cd5(beta C-->N)2 dimer, which exhibited unusual structure as observed by its 113Cd-nuclear magnetic resonance. These differences in structure and reactivity demonstrated that the requirements for formation of a stable Cd3S9 beta-cluster are more stringent than simply the sequential positions of the cysteines along the peptide chain and must include interactions involving neighboring, noncysteine amino acids.