The mesoscale variability in the Caribbean Sea. Part I: Simulations and characteristics with an embedded model

The variability in the Caribbean Sea is investigated using high resolution (1/15°) general circulation model experiments. For the first time in this region, simulations were carried out with a 2-way nested configuration of the NEMO primitive equation model. A coarse North Atlantic grid (1/3°) reproduces the main features of the North Atlantic and Equatorial circulation capable of influencing ocean dynamics in the Caribbean Sea. This numerical study highlights strong dynamical differences among basins and modifies the view that dynamics are homogeneous over the whole Caribbean Basin. The Caribbean mean flow is shown to organize in two intense jets flowing westward along the northern and southern boundaries of the Venezuela Basin, which merge in the center of the Colombia Basin. Diagnostics of model outputs show that width, depth and strength of baroclinic eddies increase westward from the Lesser Antilles to the Colombia Basin. The widening and strengthening to the west is consistent with altimetry data and drifter observations. Although influenced by the circulation in the Colombia Basin, the variability in the Cayman Basin (which also presents a westward growth from the Chibcha Channel) is deeper and less energetic than the variability in the Colombia/Venezuela Basins. Main frequency peaks for the mesoscale variability present a westward shift, from roughly 50 days near the Lesser Antilles to 100 days in the Cayman Basin, which is associated with growth and merging of eddies.     

Sedimentary facies and paleoenvironmental interpretation of a Holocene marsh in the Gironde Estuary in France

1Introduction Since the last glacial maximum, the Holocenehas been marked by a rapid rise in sea level. After6 000 a BP, the present-day level was reached andthe rate of sea-level rise (SLR) decreased rapidly(Morzadec -Kerfourn, 1974; Kidson, 1986 ).These…     

Diel variation of benthic respiration in a coral reef sediment (Reunion Island,Indian Ocean)

Oxygen and total dissolved inorganic carbon (DIC) fluxes at the water–sediment interface were measured using benthic chambers to assess the short-term variations of community respiration (CR) in the back reef sediments of Reunion Island (Indian Ocean). Benthic CR had a daily cycle of minimal (6:00 AM) and maximal values (6:00 PM), showing increases of oxygen and DIC fluxes of 2.8- and 3.8-fold, respectively. Average CR values were observed at midday and midnight. The evolution of fluxes was positively related to oxygen concentration in ambient water, but not to temperature changes. In the study area, high daytime primary production augments the amount of energy available for community metabolism and increases benthic respiration. The benthic communities are therefore subjected to short-term variable environmental conditions with oxygen supersaturation during the day, and moderately hypoxic conditions at the end of the night.     

Improvements on Fresnel arrays for high contrast imaging

The Fresnel Diffractive Array Imager (FDAI) is based on a new optical concept for space telescopes, developed at Institut de Recherche en Astrophysique et Planétologie (IRAP), Toulouse, France. For the visible and near-infrared it has already proven its performances in resolution and dynamic range. We propose it now for astrophysical applications in the ultraviolet with apertures from 6 to 30 meters, aimed at imaging in UV faint astrophysical sources close to bright ones, as well as other applications requiring high dynamic range. Of course the project needs first a probatory mission at small aperture to validate the concept in space. In collaboration with institutes in Spain and Russia, we will propose to board a small prototype of Fresnel imager on the International Space Station (ISS), with a program combining technical tests and astrophysical targets. The spectral domain should contain the Lyman-α line (λ =?121 nm). As part of its preparation, we improve the Fresnel array design for a better Point Spread Function in UV, presently on a small laboratory prototype working at 260 nm. Moreover, we plan to validate a new optical design and chromatic correction adapted to UV. In this article we present the results of numerical propagations showing the improvement in dynamic range obtained by combining and adapting three methods : central obturation, optimization of the bars mesh holding the Fresnel rings, and orthogonal apodization. We briefly present the proposed astrophysical program of a probatory mission with such UV optics.     

Fraile Detection of Solar $$-Modes by Fossat et al.

The internal gravity modes of the Sun are notoriously difficult to detect, and the claimed detection of gravity modes presented by Fossat et al. (Astron. Astrophys.604, A40, 2017) is thus very exciting. Given the importance of these modes for understanding solar structure and dynamics, the results must be robust. While Fossat et al. described their method and parameter choices in detail, the sensitivity of their results to several parameters was not presented. Therefore, we test the sensitivity of the results to a selection of the parameters. The most concerning result is that the detection vanishes when we adjust the start time of the 16.5-year velocity time-series by a few hours. We conclude that this reported detection of gravity modes is extremely fragile and should be treated with utmost caution.     

Why chromatic imaging matters

During the last two decades, the first generation of beam combiners at the Very Large Telescope Interferometer has proved the importance of optical interferometry for high-angular resolution astrophysical studies in the near- and mid-infrared. With the advent of 4-beam combiners at the VLTI, the u ? v coverage per pointing increases significantly, providing an opportunity to use reconstructed images as powerful scientific tools. Therefore, interferometric imaging is already a key feature of the new generation of VLTI instruments, as well as for other interferometric facilities like CHARA and JWST. It is thus imperative to account for the current image reconstruction capabilities and their expected evolutions in the coming years. Here, we present a general overview of the current situation of optical interferometric image reconstruction with a focus on new wavelength-dependent information, highlighting its main advantages and limitations. As an Appendix we include several cookbooks describing the usage and installation of several state-of-the art image reconstruction packages. To illustrate the current capabilities of the software available to the community, we recovered chromatic images, from simulated MATISSE data, using the MCMC software SQUEEZE. With these images, we aim at showing the importance of selecting good regularization functions and their impact on the reconstruction.     

Physical determinants of intertidal communities on dissipative beaches: Implications of sea-level rise

Sea-level rise is likely to cause significant changes in the morphodynamic state of beaches in the higher latitudes, resulting in steeper beaches with larger particle sizes. These physical changes have implications for beach invertebrate communities, which are determined largely by sediment particle size, and hence for ecosystem function. Previous studies have explored the relationships between invertebrate communities and environmental variables such as particle size, beach slope and exposure to wave action, and often these physical variables can be integrated in various indices of morphodynamic state. Most of these studies incorporated a full range of beach types that included wave-dominated surf beaches, where the wave action is harsh enough to enable reliable estimates of breaker height, a parameter included in several of the indices, and concluded that more dissipative beaches with gentler slopes and finer particle sizes often support a higher number of species and greater abundance than more reflective beaches. Whether these predictions remain valid for less wave-dominated beaches, where breaker height is more difficult to determine, is uncertain. In the present study, the abundance of meio- and macrofauna was quantified across a range of beaches in the UK, which are generally towards the lower energy end of the morphodynamic gradient, and their relationships with beach physical properties explored. No significant relationships were found between abundance and the standard morphodynamic indices, but significant relationships were found for both macro- and meiofaunal abundance when these indices were combined with an exposure index (derived from velocity, direction, duration and the effective fetch). All the relationships identified between abundance and combined morphodynamic indices indicated a higher abundance of both macro- and meiofauna on the more dissipative beaches. The reverse was however found for species richness. If predictions that accelerated sea-level rise will move beaches towards a more reflective morphodynamic state are correct, this could lead to declines in the abundance of meio- and macrofauna, with potential adverse consequences for ecosystem functioning.     

Sunken wood habitat for thiotrophic symbiosis in mangrove swamps

Large organic falls to the benthic environment, such as dead wood or whale bones, harbour organisms relying on sulfide-oxidizing symbionts. Nothing is known however, concerning sulfide enrichment at the wood surface and its relation to wood colonization by sulfide-oxidizing symbiotic organisms.In this study we combined in situ hydrogen sulfide and pH measurements on sunken wood, with associated fauna microscopy analyses in a tropical mangrove swamp. This shallow environment is known to harbour thiotrophic symbioses and is also abundantly supplied with sunken wood. A significant sulfide enrichment at the wood surface was revealed. A 72 h sequence of measurements emphasized the wide fluctuation of sulfide levels (0.1–>100 μM) over time with both a tidal influence and rapid fluctuations. Protozoans observed on the wood surface were similar to Zoothamnium niveum and to vorticellids. Our SEM observations revealed their association with ectosymbiotic bacteria, which are likely to be sulfide-oxidizers. These results support the idea that sunken wood surfaces constitute an environment suitable for sulfide-oxidizing symbioses.     

Developing a conceptual model of marine farming in New Zealand

Survey and Geographic Information System (GIS) data analysis describes the relative influence of biophysical and human variables on site choices made by marine farmers in New Zealand. Community conflicts have grown in importance in determining farm location and different government planning strategies leave distinct signature patterns. Recent legislation empowers local governments to choose among three strategies for future regional aquaculture development. This paper suggests each strategy could result in different spatial outcomes. Simulation modelling of the type described here can provide a better understanding of farmer responses to management approaches and the range of futures that could result from planning choices made today.     

Spurious diapycnal mixing in terrain-following coordinate models: The problem and a solution

In this paper, we identify a crucial numerical problem in sigma coordinate models, leading to unacceptable spurious diapycnal mixing. This error is a by-product of recent advances in numerical methods, namely the implementation of high-order diffusive advection schemes. In the case of ROMS, spurious mixing is produced by its third-order upwind advection scheme, but our analysis suggests that all diffusive advection schemes would behave similarly in all sigma models. We show that the common idea that spurious mixing decreases with resolution is generally false. In a coarse-resolution regime, spurious mixing increases as resolution is refined, and may reach its peak value when eddy-driven lateral mixing becomes explicitly resolved. At finer resolution, diffusivities are expected to decrease but with values that only become acceptable at resolutions finer than the kilometer. The solution to this problem requires a specifically designed advection scheme. We propose and validate the RSUP3 scheme, where diffusion is split from advection and is represented by a rotated biharmonic diffusion scheme with flow-dependent hyperdiffusivity satisfying the Peclet constraint. The rotated diffusion operator is designed for numerical stability, which includes improvements of linear stability limits and a clipping method adapted to the sigma-coordinate. Realistic model experiments in a southwest Pacific configuration show that RSUP3 is able to preserve low dispersion and diffusion capabilities of the original third-order upwind scheme, while preserving water mass characteristics. There are residual errors from the rotated diffusion operator, but they remain acceptable. The use of a constant diffusivity rather than the Peclet hyperdiffusivity tends to increase these residual errors which become unacceptable with Laplacian diffusion. Finally, we have left some options open concerning the use of time filters as an alternative to spatial diffusion. A temporal discretization approach to the present problem (including implicit discretization) will be reported in a following paper.