Effects of benthic biology on bottom boundary layer processes, Dry Tortugas Bank, Florida Keys

 An instrumented tetrapod was deployed for three weeks on the Dry Tortugas Bank at a depth of 26 m in February 1995. Bottom roughness was dominated by shrimp burrows and worm mounds with rms roughness amplitudes ranging from 0.47 to 1.75 cm. Logarithmic velocity profiles show apparent total roughness heights ranging from 0.30 to 1.45 cm, values consistent with observed biological roughness. The bed sediments were weakly bound by an algal crust at the sediment–water interface. When this bound layer was scraped away by a mooring that was accidentally dragged, sharp-crested wave-induced ripples appeared within the resulting swath. We conclude that physically induced roughness is biologically suppressed, but if dominant, would be significantly higher than the prevailing biological roughness.     

Bathymetry of the Tonga Trench and Forearc: a map series

Four new bathymetric maps of the Tonga Trench and forearc between 14 °S and 27 °S display the important morphologic and structural features of this dynamic convergent margin. The maps document a number of important geologic features of the margin. Major normal faults and fault lineaments on the Tonga platform can be traced along and across the upper trench slope. Numerous submarine canyons incised in the landward slope of the trench mark the pathways of sediment transport from the platform to mid- and lower-slope basins. Discontinuities in the trench axis and changes in the morphology of the landward slope can be clearly documented and may be associated with the passage and subduction of the Louisville Ridge and other structures on the subducting Pacific Plate. Changes in the morphology of the forearc as convergence changes from normal in the south to highly-oblique in the north are clearly documented. The bathymetric compilations, gridded at 500- and 200-m resolutions and extending along 500 km of the landward trench slope and axis, provide complete coverage of the outer forearc from the latitude of the Louisville Ridge-Tonga Trench collision to the northern terminus of the Tonga Ridge. These maps should serve as a valuable reference for other sea-going programs in the region, particularly the Ocean Drilling Program (ODP) and the National Science Foundation MARGINS initiative.     

A map series of the Southern East Pacific Rise and its flanks, 15° S to 19° S

Four large-scale bathymetric maps of the Southern East Pacific Rise and its flanks between 15° S and 19° S display many of the unique features of this superfast spreading environment including abundant seamounts (the Rano Rahi Field), axial discontinuities, discontinuity migration, and abyssal hill variation. Along with a summary of the regional geology, these maps will provide a valuable reference for other sea-going programs on-and off-axis in this area, including the Mantle ELectromagnetic and Tomography (MELT) experiment.     

Physical characterisation and a biologically focused classification of “seamounts” in the New Zealand region

The physical, biological, and oceano‐graphic characteristics of seamounts of the New Zealand region of the South Pacific Ocean are poorly known. The aim of this study was to present a synopsis of the physical characteristics of seamounts within the region, and to present a preliminary classification using biologically meaningful variables. Data for up to 16 environmental variables were collated and used to describe the distribution and characteristics of the c. 800 known seamounts in the New Zealand region. Seamounts span a wide range of sizes, depths, elevation, geological associations and origins, and occur over the latitudinal range of the region, lying in different water masses of varying productivity, and both near shore and off shore. As such, it was difficult to generally describe New Zealand seamounts, as there is no “typical” feature. Thirteen environmental variables were included in a multivariate cluster analysis to identify 12 seamount similarity groupings, for a subset of over half the known seamounts. The groupings generally displayed an appreciable geographic distribution throughout the region, and were largely characterised by a combination of four variables (depth at peak, depth at base, elevation, and distance from continental shelf). In the future, the findings of the present study can be tested to determine the validity and usefulness of the approach for directing future biodiversity research and informing management of seamount habitat.     

A Method for Installing Piezometers in Large Cobble Bed Rivers

An impact drive point method is described for emplacing piezometers in a cobble river bottom where this has previously been difficult without the use of drilling rigs. To force the drive point piezometers through coble, the vibrational impact of an air-powered hammer was carried directly to the drive point by the use of an internal drive rod. After insertion to depth, the drive rod was removed from the lower portion of the piezometer and a standpipe was added to extend the piezometer above the river level. Piezometers installed in this way have permitted water quality analysis and dynamic measurement of vertical potentials in cobble sediments ranging in size from 2.5 to >30 cm and the method has been successfully used in the Columbia River, USA, and Töss River, Switzerland. This innovative method provides information on the hydrodynamics of pore water in highly permeable, cobble deposits that are common in high-energy river and lake bottoms. Piezometers installed using the internal drive rod method facilitate the assessment of the temporal and spatial dynamics of recharge and discharge at the ground water/surface water interface and analyses of the ecological connectivity between the hyporheic zone and surface water of rivers and streams. This information will lead to improved management decisions related to our nation's ground water and surface water supplies.     

A Customization of the Arc Marine Data Model to Support Whale Tracking via Satellite Telemetry

The Arc Marine data model is a generalized template to guide the implementation of geographic information systems (GIS) projects in the marine environment. It developed out of a collaborative process involving research and industry shareholders in coastal and marine research. This template models and attempts to standardize common ocean and coastal data types to facilitate data sharing and analytical tool development. In this study, Arc Marine is extended from its core model to fit the research goals of the whale satellite-telemetry-tagging program of the Oregon State University Marine Mammal Institute (MMI). The study sought the best customization of the generic Arc Marine data model to enhance the key advantages of satellite telemetry for mapping the distribution and movement of endangered marine mammal species. It was found that three new groups of object classes were needed (Animal, Telemetry, and Operations). Further customization involved the development of a comprehensive framework for animal tracking with Argos satellite telemetry data. A new multidimensional data cube model was also devised, showing how this extension of Arc Marine serves as an appropriate target schema for the application of on-line analytical processing (OLAP) tools and spatial data mining of satellite telemetry tracking datasets.     

Genetic structure of the tall sea pen Funiculina quadrangularis in NW Scottish sea lochs

The tall sea pen Funiculina quadrangularis has a patchy distribution around the UK, being found in sheltered waters below 20 m depth on the northwest coast of Scotland and Ireland. The limited distribution and sensitivity to bottom fishing activities make F. quadrangularis vulnerable to reduction in population numbers that may lead to genetic isolation and reduced diversity. Because of this vulnerability and low resilience to physical disturbance, the tall sea pen is recognised as a Species of Principle Importance under the Natural Environment and Rural Communities Act, 2006, UK. ( http://www.legislation.gov.uk/ukpga/2006/16/contents ) and is also on the Biodiversity Action Plan list of Priority Species for the UK. In the Mediterranean it is recognised as a sensitive and essential fish habitat because it forms habitat for several commercially important crustaceans. The aim of this study was to understand the current state of the genetic structure and gene flow of F. quadrangularis in areas of NW Scotland. We developed 10 microsatellite markers and used them to genotype 176 samples from four populations. Overall, our results suggest that there is high genetic diversity and high gene flow between colonies of F. quadrangularis in and among locations in Loch Linnhe and Loch Duich. As a result of the high rates of gene flow, genetic differentiation between sites was low. This may provide resilience to human impacts if distant populations have a high connectivity. However, care must be taken, as small but significant isolation by distance was found between the most geographically distant sites and only a small part of the species range was examined in this study. The genetic tools developed here will provide a foundation for wider studies of this vulnerable species.     

Inhomogeneous substrate analysis using EM300 backscatter imagery

Backscatter reflectivity from multibeam echo-sounders provides a powerful tool to efficiently characterize seafloor substrates. A comprehensive EM300 bathymetric and backscatter survey has been completed of Cook Strait, in central New Zealand. This paper presents a detailed analysis of the realtime corrections applied to the raw EM300 multibeam data and additional corrections required to compute angular variations of the backscatter strength. The corrections, including the local absorption coefficient, the influence of seafloor topography and sound refraction in the water column, are determined for different Cook Strait seafloor substrates. Modifying MB-System software code, we extracted the backscatter signal parameters in order to quantify the raw backscatter strength and apply additional processing. Profiles of backscatter strength versus incidence angle were computed for a variety of sites characterized by flat seafloor and homogeneous substrates, and for which ground-truth data were available. For each homogeneous site, different but characteristic backscatter profiles are observed that can be interpreted in terms of sediment facies. To analyze heterogeneous substrates, we present a statistical technique, based on a 3-dimensional distribution of (incidence angle, backscatter strength) couples that preserves geological information of the substrate components. This analysis, using backscatter data acquired on a submarine volcano, north of New Zealand, clearly differentiates soft sediments and lava flows within a heterogeneous substrate.