Coastal and estuarine habitat mapping, using LIDAR height and intensity and multi-spectral imagery

The airborne laser scanning LIDAR (LIght Detection And Ranging) provides high-resolution Digital Terrain Models (DTM) that have been applied recently to the characterization, quantification and monitoring of coastal environments. This study assesses the contribution of LIDAR altimetry and intensity data, topographically-derived features (slope and aspect), and multi-spectral imagery (three visible and a near-infrared band), to map coastal habitats in the Bidasoa estuary and its adjacent coastal area (Basque Country, northern Spain). The performance of high-resolution data sources was individually and jointly tested, with the maximum likelihood algorithm classifier in a rocky shore and a wetland zone; thus, including some of the most extended Cantabrian Sea littoral habitats, within the Bay of Biscay. The results show that reliability of coastal habitat classification was more enhanced with LIDAR-based DTM, compared with the other data sources: slope, aspect, intensity or near-infrared band. The addition of the DTM, to the three visible bands, produced gains of between 10% and 27% in the agreement measures, between the mapped and validation data (i.e. mean producer's and user's accuracy) for the two test sites. Raw LIDAR intensity images are only of limited value here, since they appeared heterogeneous and speckled. However, the enhanced Lee smoothing filter, applied to the LIDAR intensity, improved the overall accuracy measurements of the habitat classification, especially in the wetland zone; here, there were gains up to 7.9% in mean producer's and 11.6% in mean user's accuracy. This suggests that LIDAR can be useful for habitat mapping, when few data sources are available. The synergy between the LIDAR data, with multi-spectral bands, produced high accurate classifications (mean producer's accuracy: 92% for the 16 rocky habitats and 88% for the 11 wetland habitats). Fusion of the data enabled discrimination of intertidal communities, such as Corallina elongata, barnacles (Chthamalus spp.), and stands of Spartina alterniflora and Phragmites australis, which presented misclassification when conventional visible bands were used alone. All of these results were corroborated by the kappa coefficient of agreement. The high classification accuracy found here, selecting data sources, highlights the value of integrating LIDAR data with multi-spectral imagery for habitat mapping in the intertidal complex fringe.     

Linking foraging behavior and diet in a diving seabird

Foraging behavior and diet of breeding seabirds may be analysed simultaneously with the combined use of remote sensing devices and stable isotope analysis. Imperial shag, Phalacrocorax atriceps, breeding at Punta León colony, Argentina, were equipped with global positioning system (GPS) loggers to record foraging trips and blood samples were taken after removal of the devices in order to analyse their nitrogen and carbon stable isotope composition in whole blood and plasma. Whole blood was correlated to plasma isotopic composition for each individual (n = 35), linking diet in the short and medium term. Sexes did not differ in isotopic signatures. The maximum distance reached and the total number of dives that individuals made on two consecutive foraging trips were correlated to their plasma nitrogen isotopic signature. Individuals that went further from the colony and dived fewer times presented more positive signatures, indicative of benthic prey consumption (e.g. Raneya brasiliensis). Diet was predominantly benthic with some individuals incorporating pelagic prey (Engraulis anchoita) and even cephalopods (Octopus tehuelchus). Within breeding pairs (n = 9), different combinations of foraging and prey preferences were observed. Estimated trophic levels of these individuals were similar to those of the same species in other colonies further south along the Patagonian coast.     

Tectonics of an extinct ridge-transform intersection,Drake Passage (Antarctica)

New swath bathymetric, multichannel seismic and magnetic data reveal the complexity of the intersection between the extinct West Scotia Ridge (WSR) and the Shackleton Fracture Zone (SFZ), a first-order NW-SE trending high-relief ridge cutting across the Drake Passage. The SFZ is composed of shallow, ridge segments and depressions, largely parallel to the fracture zone with an `en echelon' pattern in plan view. These features are bounded by tectonic lineaments, interpreted as faults. The axial valley of the spreading center intersects the fracture zone in a complex area of deformation, where N120° E lineaments and E–W faults anastomose on both sides of the intersection. The fracture zone developed within an extensional regime, which facilitated the formation of oceanic transverse ridges parallel to the fracture zone and depressions attributed to pull-apart basins, bounded by normal and strike-slip faults.On the multichannel seismic (MCS) profiles, the igneous crust is well stratified, with numerous discontinuous high-amplitude reflectors and many irregular diffractions at the top, and a thicker layer below. The latter has sparse and weak reflectors, although it locally contains strong, dipping reflections. A bright, slightly undulating reflector observed below the spreading center axial valley at about 0.75 s (twt) depth in the igneous crust is interpreted as an indication of the relict axial magma chamber. Deep, high-amplitude subhorizontal and slightly dipping reflections are observed between 1.8 and 3.2 s (twt) below sea floor, but are preferentially located at about 2.8–3.0 s (twt) depth. Where these reflections are more continuous they may represent the Mohorovicic seismic discontinuity. More locally, short (2–3 km long), very high-amplitude reflections observed at 3.6 and 4.3 s (twt) depth below sea floor are attributed to an interlayered upper mantle transition zone. The MCS profiles also show a pattern of regularly spaced, steep-inclined reflectors, which cut across layers 2 and 3 of the oceanic crust. These reflectors are attributed to deformation under a transpressional regime that developed along the SFZ, shortly after spreading ceased at the WSR. Magnetic anomalies 5 to 5 E may be confidently identified on the flanks of the WSR. Our spreading model assumes slow rates (ca. 10–20 mm/yr), with slight asymmetries favoring the southeastern flank between 5C and 5, and the northwestern flank between 5 and extinction. The spreading rate asymmetry means that accretion was slower during formation of the steeper, shallower, southeastern flank than of the northwestern flank.     

Microcoleus autumnalis and filamentous algae-dominated mats and chlorophyll-a increase with agricultural land use but respond differently to associated nutrient and sediment enrichment

ABSTRACT

This study investigated the impact of pastoral land use and nutrient and fine sediment inputs on Microcoleus autumnalis and filamentous algae-dominated mats, and benthic chlorophyll-a in streams (lower North Island, New Zealand). Surveying and sampling was undertaken monthly at 61 sites spanning a wide gradient in catchment cover and environmental conditions. Two boosted regression tree models were built. The first models included pastoral land cover and five environmental variables as predictors. In the second model pastoral land cover was replaced by nutrient/sediment data. The abundance of the two mat types and chlorophyll-a increased when pastoral land cover was between 20% and 70% (model 1). Replacement of pastoral land cover by nutrient/sediment data (model 2) slightly improved the model fit for all three periphyton variables. Microcoleus autumnalis-dominant mats increased with dissolved inorganic nitrogen concentrations up to ca. 0.6?mg?L^?1, and in streams with more frequent flushes. In contrast, filamentous algal-dominated mats increased with turbidity, and in streams with less frequent flushes. Chlorophyll-a generally followed the response of the dominant periphyton type. Increased knowledge on responses of specific periphyton types, rather than total biomass, to environmental variables is essential to guide effective management strategies.     

The Huelva (Spain) Tsunami-Ready Station and Its Interaction with Storm Emma (March 2018)

Abstract

The sea level station operating since 1996 at Mazagón (Huelva, Spain) has been progressively upgraded to fit tsunami warning requirements, due to its location in one of the main regions at risk. Its radar water level sensor was complemented in 2017, with the addition of a pressure sensor. The performance of both sea level sensors and their response to sea level oscillations, at different frequencies, is assessed. Particular emphasis is put on the effect of extreme events, such as Storm Emma, when alternative methods to obtain 1-min data are tested, in contrast to the one based on arithmetic means. The overall differences are small, for the whole period of study (centered-root-mean-square-error below 1?cm, for 5-min, and hourly data; similar tidal parameters and sea level oscillations with periods between 30?s and 5?min). However, during Storm Emma, the pressure sensor presents sensibly lower readings than the radar, with the centered-root-mean-square-error rising to 80?mm on the March 2^nd 2018. A new method to compute 1-min data, based on medians, reduced this value to 10?mm for the same day.     

Distribution and transport of organic matter along a filament-eddy system in the Canaries – NW Africa coastal transition zone region

The distribution and transport of chlorophyll a (Chla), particulate (POC) and dissolved (DOC) organic carbon, and the respiratory ETS activity of the microplankton community were studied along a filament-eddy system located in the transition zone between the NW Africa upwelling and Canary Islands waters. Two independent filaments (F1 and F2) stemming from the coastal jet, between Cape Juby and Cape Bojador, merged about 100 km offshore, turning southward and onshore forced by the circulation of a recurrent oceanic cyclonic eddy. In general, the coastal upwelling waters presented higher Chla, but lower POC, DOC and ETS activity than filament waters. However, differences in organic carbon distribution and respiratory activity were observed among stations from the two filaments. The bio-chemical fields were strongly influenced by a complex sub-mesoscale hydrography resulting from the interaction of cyclonic and anticyclonic island eddies with the filaments. The combined F1 + F2 filament system transported 97.1 kg s⁻¹ of excess (non-refractory) total organic carbon (e-TOC), a value comparable to other published estimates from upwelling filaments in the NE Atlantic. About 90% of e-TOC was exported as DOC, since eddy re-circulation precluded the offshore transport of POC. Assuming that the calculated transport of e-TOC is representative of the annual average, the yearly offshore transport (3.1 x 10⁹ kg C) would represent about 25% of the upwelling primary production of the region of study.     

Sea,freshwater or saltpans? Foraging ecology of terns to assess mercury inputs in a wetland landscape: The Ebro Delta

The Ebro catchment, the largest river basin in Spain, includes various heavily industrialized areas. Among these is the Flix site, where a chemical plant has been operating since the beginning of the 20th century. This extended operational period, together with the construction of a dam next to the factory around 1960, resulted in the accumulation of large amounts of heavily polluted sediments in the adjacent riverbed, many of which are contaminated by mercury. Pollutants from Flix are carried downstream by the Ebro River to its delta. In order to assess the transfer of mercury to the complex river estuary ecosystem, we studied the ecology of the tern community living there as these birds segregate into a range of habitats. For this purpose, first we used stable isotope analysis (SIA) (δ³⁴S, δ¹³C, δ¹⁵N) of eggs to determine the trophic ecology and habitat partitioning of several tern species (Common, Sandwich, Little, Gull-Billed and Whiskered Tern) breeding sympatrically, in order to link their foraging ecology with habitat types. Next we measured mercury concentrations in eggs to monitor the input of this metal into the diverse habitats. With the exception of the Little Tern, the other terns used a restricted habitat range in the Ebro Delta, as shown by C and S isotopes; the Gull-Billed and Whiskered Tern foraged in freshwater habitats, while the Common and Sandwich Tern used marine habitats. This restricted feeding behavior of the Gull-Billed and Common Tern contrasts with previous reports in other breeding sites. The Little Tern, which showed a wide range of isotopic values, was found to be an opportunistic forager but fed mainly in saltpans, a feeding habitat not reported previously for this species in this area. We found that mercury concentrations are related to foraging habitat and diet, and are unexpectedly higher in species feeding on demersal prey in marine habitats and also higher in birds feeding in saltpans than in those feeding in freshwater habitats. The mercury concentrations found in the Little and Common Tern eggs sampled in “Punta de la Banya” may be sufficiently high to endanger breeding success.     

Chemosynthetic trophic support for the benthic community at an intertidal cold seep site at Mocha Island off central Chile

We analyzed C and N stable isotope ratios of benthic fauna and their potential food sources at an intertidal methane seep site and a control site without emanation at Mocha Island (central Chile). The objective was to trace the origin of the main food sources used by the local heterotrophic fauna, based on the hypothesis that chemosynthetic production could be partially fueling the local food web at the seep site. Food sources sampled at both sites included macroalgae, particulate organic matter and bacteria-like filaments found growing over the red algae Gelidium lingulatum within the areas of active methane release.     

Mid and late Holocene forest fires and deforestation in the subalpine belt of the Iberian range,northern Spain

The conversion of subalpine forests into grasslands for pastoral use is a well-knownphenomenon, although for most mountain areas the timing of deforestation has not been determined. The presence of charcoal fragments in soil profiles affected by shallow landsliding enabled us to date the occurrence of fires and the periods of conversion ofsubalpine forest into grasslands in the Urbión Mountains, Iberian Range, Spain. We found that the treeline in the highest parts of the northwestern massifs of the Iberian Range(the Urbión, Demanda, Neila, and Cebollera massifs) is currently between 1500 and 1600 m a.s.l., probably because of pastoral use of the subalpine belt, whereas in the past it would have reached almost the highest divides(at approximately 2100–2200 m a.s.l.). The radiocarbon dates obtained indicate that the transformation of the subalpine belt occurred during the Late Neolithic, Chalcolithic, Bronze Age, Iron Age, and Middle Ages. Forest clearing was probably moderate during fires prior to the Middle Ages, as the small size of the sheep herds and the local character of the markets only required small clearings, and therefore more limited fires. Thus, it is likely that the forest recovered burnt areas in a few decades; this suggests the management of the forest and grasslands following a slash-andburn system. During the Middle and Modern Ages deforestation and grassland expansion affected most of the subalpine belt and coincided with the increasing prevalence of transhumance, as occurred in other mountains in the Iberian Peninsula(particularly the Pyrenees). Although the occurrence of shallow landslides following deforestation between the Neolithic and the Roman Period cannot be ruled out, the most extensive shallow landsliding processes would have occurred from the Middle Ages until recent times.     

Comparison of Different Techniques of Tilt Testing and Basic Friction Angle Variability Assessment

A relevant parameter for estimating discontinuity shear strength is the basic friction angle, usually derived from different types of tilt tests. However, the tilt tests described in the literature produce varying basic friction angle values. From a large number of different types of tilt tests on different kinds of rocks, it was possible to conclude that the mechanisms of sliding along cylinder generatrixes and planar surfaces are quite different, and that tests based on sliding along generatrixes are not appropriate for determining reliable basic friction angle values for discontinuity planes. Tests on small specimens are also not recommended, for geometry reasons and because ensuring reliable stress conditions is difficult. To quantify the natural variability in tilt testing, large specimens of the same granite were tested. The results revealed coefficients of variation for the basic friction angle in the range of 5–10?%, a variability which is no greater than that found for other rock mechanics parameters. This observation enables to forward some recommendations concerning the appropriate number of tests needed to obtain reliable results.