Cloning of a chub metallothionein cDNA and development of competitive RT-PCR of chub metallothionein mRNA as a potential biomarker of heavy metal exposure

Metallothionein has been assayed in a range of aquatic animal tissues as an indicator of metal exposure. We sequenced chub (Leuciscus cephalus) metallothionein cDNA which showed over 90% homology to common carp, goldfish and stone loach and 77% homology to rainbow trout sequences for metallothionein. We then used the extended primer method to develop an accurate quantitative competitive RT-PCR assay for metallothionein mRNA. RT-PCR was used to measure metallothionein mRNA in feral chub from a range of field sites, with different levels of heavy metal pollution, in the West Midlands, UK. Measurements were complemented by analysis of liver and gill metallothionein protein by capillary electrophoresis. There was no significant difference in the metallothionein protein levels between fish of different rivers and there was no evidence of elevation of mRNA at the sites of highest metal exposure. The level of metal exposure (e.g. zinc, nickel and cadmium each ranging between 15 and 28 microg/l ) at the pH (7.5-8.5) of these rivers appears insufficient to elevate hepatic or gill metallothionein in chub. A lack of elevation of hepatic metallothionein mRNA in chub exposed to zinc, copper and manganese for 24 h and 10 days in the laboratory also suggests a non-responsiveness of this species.     

Regimes and the history of the major fisheries off Canada's west coast

The major fisheries on the Pacific coast of Canada can be grouped into 12 species that have consistently represented about 80–90% of the total catch from the past to the present. A review of population dynamics of these species indicates that climate and the ocean environment have a major impact on their productivity. We review the history of Canada's Pacific coast fishery to show that trends in catch were similar to trends in the climate and ocean environment. Decadal scale patterns in climate and the ocean are termed regimes and we show that it is the regime scale of climate variability that most influences the long-term trends in the catches in these major fisheries. Ignoring the impacts of regime shifts on the abundance trends in the future could result in collapses of major fisheries. The difficulty of knowing when a regime shift will occur may be overcome as we discover more about the mechanisms that affect the decadal-scale trends in the rotational velocity of the solid earth which is measured as the length of day (LOD).     

Regime shifts and fishery management

Understanding regime shifts is important to management. Optimal allocation of fishery effort can be improved if it were known whether or not the regime was positive or negative. This determination is difficult because a high recruitment, when the stock is at a low level of abundance (or vice versa), may be the indication of the onset of a multidecadal regime shift, or just a chance occurrence. Accordingly, the determination of an increase or decrease in productivity from observations independent of those made directly on fish populations is important.     

A Comparison of Simulated Particle Fluxes Using NEMURO and Other Ecosystem Models in the Western North Pacific

JGOFS has revealed the importance of marine biological activity to the global carbon cycle. Ecological models are valuable tools for improving our understanding of biogeochemical cycles. Through a series of workshops, the North Pacific Marine Science Organization (PICES) developed NEMURO (North Pacific Ecosystem Model Understanding Regional Oceanography) a model, specifically designed to simulate the lower trophic ecosystem in the North Pacific Ocean. Its ability to simulate vertical fluxes generated by biological activities has not yet been validated. Here compare NEMURO with several other lower trophic level models of the northern North Pacific. The different ecosystem models are each embedded in a common three-dimensional physical model, and the simulated vertical flux of POM and the biomass of phytoplankton are compared. The models compared are: (1) NEMURO, (2) the Kishi and Nakata Model (Kishi et al., 1981), (3) KKYS (Kawamiya et al., 1995, 2000a, 2000b), and (4) the Denman model (Denman and Peña, 2002). With simple NPZD models, it is difficult to describe the production of POM (Particulate Organic Matter) and hence the simulations of vertical flux are poor. However, if the parameters are properly defined, the primary production can be well reproduced, even though none of models we used here includes iron limitation effects. On the whole, NEMURO gave a satisfactory simulation of the vertical flux of POM in the northern North Pacific.     

North Pacific Synthesis of the Joint Global Ocean Flux Study: Overview

This special issue is comprised of 13 papers, including this overview, and focuses on the synthesis of the Joint Global Ocean Flux Study (JGOFS) in the North Pacific which took place from 1997 through 2003. The effort was led by the JGOFS North Pacific Synthesis Group, with the aim of quantifying CO₂ drawdown by physical and biological pumps in the North Pacific by identifying and studying the regional, seasonal to inter-annual variations in the key processes, and understanding their regulating mechanisms. Emphasis was placed on the similarities and differences of the biogeochemical regimes in the eastern and western subarctic Pacific. Effort was also made to address the future research directions which arose from the scientific findings during the North Pacific JGOFS process study. A brief overview of the papers from view points of CO₂ drawdown by physical and biological pumps, spatial variability, and temporal variability from seasonal to decadal scales is made, followed by suggestions for the directions of future research. This revised version was published online in July 2006 with corrections to the Cover Date.     

Tectonic setting of the Azores Plateau deduced from a OBS survey

The studies of Azores seismicity generally show shocks with either normal faulting or right-lateral strike-slip along the ESE direction, compatible with a eastward relative motion of the Eurasian (EU) relative to the African (AF) plate. However, the 1 January 1980 earthquake was interpreted as a clear left-lateral strike-slip shock along the N150E direction. This pattern is difficult to explain in terms of the relative motion between the EU, AF and North American (NA) plates: all available models for the present day movement of this triple junction fail to explain the regional variability in the stress conditions of the area. Here we present data from a 34-day long Ocean Bottom Seismograph array deployment. We show that the seismicity is distributed along a band aligned with the island chain itself, and is concentrated along several faults with an approximate N150E strike, cutting the Azores plateau in all the area covered by the OBS network. The combination of these new results with other geophysical data permits us to conclude that the tectonic setting of the Azores plateau is characterised by the existence of two sets of faults, in the N120E and N150E directions, defining several crustal blocks, whose relative motion accommodates the interaction of the three megaplates. The deformation of these tectonic blocks is probably driven by the shear between the EU and AF plates. This model explains well the spatial variability of the stress conditions in the Azores domain, the combination of dextral and sinistral strike slip mechanisms and the observed seismotectonics of the Azores islands.     

Introduction

Marine Geophysical Research -     

Optimal Processing of Marine High-Resolution Seismic Reflection (Chirp) Data

Chirp frequency-modulated (FM) systems offer deterministic, repeatable source-signatures for high-resolution, normal incidence marine seismic reflection data acquisition. An optimal processing sequence for uncorrelated Chirp data is presented to demonstrate the applicability of some conventional seismic reflection algorithms to high-resolution data sets, and to emphasise the importance of a known source-signature. An improvement of greater than 60dB in the signal- to-noise ratio is realised from correlating the FM reflection data with the transmitted pulse. Interpretability of ringy deconvolved data is enhanced by the calculation of instantaneous amplitudes. The signal-to-noise ratio and lateral reflector continuity are both improved by the application of predictive filters whose effectiveness are aided by the repeatability of the Chirp source.