Detection of white spot syndrome virus (WSSV) ofPenaeus chinensis by in situ hybridization

White Spot Syndrome Virus (WSSV) was purified from hemolymph of infected shrimp. After nucleic acid extraction from the purified virus particles, EcoR I-digested fragments of the WSSV genome were cloned; three of these fragments were used as non-radioactive probes labeled with DIG-11-dUTP. The probes hybridized in situ, with sections located in the nuclei of all WSSV-infected tissues. The virus was detected in the gill, stomach, epidermis, and connective tissue and so on, but not detected in healthy shrimp tissues and epithelial cells of hepatopancreatic tubules of diseased shrimp. This work was supported by SRF for ROCS, SEM and the National 863 Project (Grant 819-Q-08) and Project under major State Basic Research Development Program (Grant G1999012002).     

Curvature derived from LiDAR digital elevation models as simple indicators of debris-flow susceptibility

To mitigate the damage caused by debris flows resulting from heavy precipitation and to aid in evacuation plan preparation, areas at risk should be mapped on a scale appropriate for affected individuals and communities. We tested the effectiveness of simply identifying debris-flow hazards through automated derivation of surface curvatures using LiDAR digital elevation models. We achieved useful correspondence between plan curvatures and areas of existing debris-flow damage in two localities in Japan using the analysis of digital elevation models(DEMs). We found that plan curvatures derived from 10 m DEMs may be useful to indicate areas that are susceptible to debris flow in mountainous areas. In residential areas located on gentle sloping debris flow fans, the greatest damage to houses was found to be located in the elongated depressions that are connected to mountain stream valleys. Plan curvaturederived from 5 m DEM was the most sensitive indicators for susceptibility to debris flows.     

Methane in the East China Sea water

Methane in the East China Sea water was determined four times at a fixed vertical section along PN line consisting of 11–14 stations, in February 1993, October 1993, June 1994 and August 1994. The mean concentration of methane in the surface water was not significantly higher than that in the open ocean. The methane concentration below the pycnocline increased during the stratified period in summer to autumn and reached to 15 nmoles/l at most in October. The concentration of methane was fairly well correlated with AOU in the layer below the pycnocline in the stratified season. This means that methane in the bottom water has only a single source, which is expected to be anoxic sediments near the coast, and that the oxidation rate of methane in the water is extremely slow in the oxic water. The high methane observed in October completely disappeared in February, indicating that the methane was escaped to the atmosphere or transported to the pelagic ocean by the Kuroshio current. The East China Sea, therefore, is not a large direct and stationary source for the atmospheric methane, but may have some role as a source by supplying it sporadically to the atmosphere in early winter or indirectly from the surface of the pelagic ocean.     

Biogeochemical Variation in Dimethylsulfide, Phytoplankton Pigments and Heterotrophic Bacterial Production in the Subarctic North Pacific during Summer

Dimethylsulfide (DMS), chlorophyll a (Chl-a), accessory pigments (fucoxanthin, peridinin and 19-hexanoyloxyfucoxanthin), and bacterial production (BP) were measured in the surface layer (0–100 m) of the subarctic North Pacific, including the Bering Sea, during summer (14 July–5 September, 1997). In surface sewater, the concentrations of DMS and Chl-a varied widely from 1.3 to 13.2 nM (5.1 ± 3.0 nM, mean ± S.D., n = 48) and from 0.1 to 2.4 µg L^–1 (0.6 ± 0.6 µg L^–1, n = 24), respectively. In the subarctic North Pacific, DMS to Chl-a ratios (DMS/Chl-a) were higher on the eastern side than the western side (p < 0.0001). Below the euphotic zone, DMS/Chl-a ratios were law and the correlation between DMS and Chl-a was relatively strong (r ² = 0.700, n = 27, p < 0.0001). In the euphotic zone, DMS/Chl-a ratios were higher and the correlation between DMS and Chl-a was weak (r ² = 0.128, n = 50, p = 0.01). The wide variation in DMS/Chl-a ratios would be at least partially explained by the geographic variation in the taxonomic composition of phytoplankton, because of the negative correlation between DMS/Chl-a and fucoxanthin-to-Chl-a ratios (Fuc/Chl-a) (r ² = 0.476, n = 26, p = 0.0001). Furthermore, there was a positive correlation between DMS and BP (r ² = 0.380, n = 19, p = 0.005). This suggests that BP did not represent DMS and dimethylsulfoniopropionate (DMSP) removal by bacterial consumption but rather DMSP degradation to DMS by bacterial enzyme.     

A near-inertial current event in the homogeneous deep layer of the northern Sea of Japan during winter

Under strong surface wind forcing during winter, direct current observations in the northern Sea of Japan show the existence of strong near-inertial currents in the deep water that is characterized by the extremely homogeneous vertical structures of temperature and salinity. However, the mechanism generating internal waves in the deep water of the northern Sea of Japan has not been well understood. In this study, to clarify the dynamical link between the surface wind forcing and near-inertial currents in the deep water of the northern Sea of Japan, we drive a general circulation model taking into account realistic wind stress, ocean bottom and land topography. In the northern Sea of Japan, the numerical results show that vertically coherent horizontal currents with a speed of ~ 0.05 m s^?1 are excited throughout the homogeneous deep water. A two-layer model successfully reproduces the pattern of the horizontal current velocities shown by the general circulation model, indicating that internal waves emanate westward from the northwestern coast of Japan through coastal adjustment to the strong wind forcing event and, while propagating into the ocean interior, they excite evanescent near-inertial response throughout the lower layer below the interface.     

Seasonal variation of horizontal material transport through the eastern channel of the Tsushima Straits

We conducted hydrographic observations ten times in the Tsushima Strait to reveal seasonal variations of horizontal material transports such as of heat, freshwater, chlorophyll a, and dissolved inorganic nitrogen (DIN) and phosphorus (DIP) through the eastern channel of the Tsushima Strait (ECTS). The volume, freshwater, and heat transport results are of nearly the same order as results reported in previous studies. The annual mean DIN and DIP transports of 3.59 kmol/s and 0.29 kmol/s are large relative to those of the Changjiang and the Taiwan Strait and are horizontally transported through the ECTS. Nutrient transports are high in July–August and October and low in April and November. Increased nutrient transports in July–August and October are due to the appearance of a cold saline water mass in the bottom layer of the ECTS. Changes in DIN transports in summer and autumn, which account for two-thirds of the total annual DIN transport, would have a large effect on the nitrogen budget and biological productivity in the Tsushima Warm Current region.     

Possibility of recent changes in vertical distribution and size composition of chlorophyll-a in the western North Pacific region

Our analysis of the last three decades of retrospective data of vertical distributions and size composition of chlorophyll-a (Chl-a) over the western North Pacific has revealed significant changes of three indices related to Chl-a during summer season, as follows: (1) decreasing linear trend of the proportion of Chl-a in surface layer to that of the whole water column by 0.4 and 2.3% year⁻¹ in the subtropical area along 137°E (STA₁₃₇) during 1972 to 1997 and in the Kuroshio Extension area along 175°E (KEA₁₇₅) during 1990 to 2001; (2) increasing linear trend of the depth of subsurface Chl-a maximum (DCM) by 0.4 and 2.6 m year⁻¹ in STA₁₃₇ and KEA₁₇₅; and (3) decreasing linear trend of larger-size Chl-a (>3 μm) by 0.1 and 2.5% year⁻¹ in STA₁₃₇ and KEA₁₇₅, respectively. Water density (σ _θ ) at 75 m depth had also decreased by 0.006 and 0.05 year⁻¹ in STA₁₃₇ and KEA₁₇₅, respectively. The ratio of biogenic opal to biogenic CaCO₃ in the sinking flux decreased by 0.015 year⁻¹ in the subtropical region from 1997 to 2005. These findings may indicate that the subsurface chlorophyll maximum is deepening and larger phytoplankton such as diatoms has been decreasing during the past decade, associated with the decreasing density of surface water caused by warming in the western North Pacific, especially in the summer.     

Mineral composition variation in Alpine Schist, Southern Alps, New Zealand: Implications for recrystallization and exhumation

Abstract Compositional variation of silicates (plagioclase, K-feldspar, epidote, titanite, garnet, white mica, biotite, chlorite), ilmenite, carbonates (calcite, ankerite) and apatite, in quartzofeldspathic lithologies of the Alpine Schist, New Zealand, is discussed in terms of increasing metamorphic grade and possible isograd-producing reactions. The mineral data, in conjunction with geological considerations, are used to determine polychronous P-T arrays of an early high P/T event (c. 16°C/kb; 5°C/km) overprinted by a lower P/T event (c. 50°C/kb; 15°C/km) that provides an estimation of Mesozoic and Cenozoic exhumation of schist of 11 to 13 km and 19 to 22 km respectively. The effects of possible shear heating and recrystallization to form K-feldspar zone schist near the Alpine Fault is consistent with movement along a mid to lower crustal detachment surface during Cenozoic shortening, and near isothermal exhumation of the schists to form the Southern Alps.     

A primitive odobenine walrus of Early Pliocene age from Japan

Abstract The well preserved cranium of Protodobenus japonicus, a new genus and species of odobenine walrus, is from the lower part of the Tamugigawa Formation at Ooshima-mura, Higashi Kubiki-gun, Niigata Prefecture, central Japan. The lower part of the formation that yielded P. japonicus is Early Pliocene, dating approximately from 5.0 to 4.9 Ma. The skull of P. japonicus is generally shaped like that of the modern walrus, Odobenus rosmarus (Linnaeus, 1758), but is much more primitive, especially in the dentition. Protodobenus japonicus is derived from the Imagotariinae. It is similar to such primitive fossil walruses as Prorosmarus alleni from the Western Atlantic and Aivukus cedrosensis from Baja California, and has some similarities as well as significant differences from them. Protodobenus japonicus could have evolved directly into Odobenus in the North Pacific Ocean, and could have dispersed directly to the Arctic Ocean. This is contrary to the scenario proposed by Repenning and Tedford, in which primitive odobenids, like Aivukus cedrosensis, migrated to the Atlantic Ocean through the Central American Seaway and returned to the North Pacific Ocean as O rosmarus via the Arctic about 0.6 Ma. Regarding the first lower premolar of the living walrus, Fay concluded after studying fetal O. rosmarus that the first premolar (P₁) of the mandible is absent, and that the lower tooth row consists of: C₁ P₂, P₃, P₄. Protodobenus japonicus has in its mandible I _1-2 C₁ P₂, P₃, P₄, and this is the primitive pinniped formula. Pinnipeds typically lose the molars, not the anterior premolars, and the present author believes that the correct tooth formula for O rosmarus is C₁ P₁, P₂, P₃. Its skull, palate, and mandible suggest that P. japonicus had morphology pre-adapted to an early stage of benthic suction feeding, but it probably was unable to rely on that method of feeding. The discovery of P. japonicus demonstrates that the odobenine lineage (true walruses) goes back in time at least 5 Ma. Other more aberrant odobenine walruses, such as Aivukus and Prorosmarus, and pseudo-walruses of the subfamily Dusignathinae, are more distantly removed from the lineage leading to living walruses than has previously been suspected.