Reionization and the Cosmic Dawn with the Square Kilometre Array

The Square Kilometre Array (SKA) will have a low frequency component (SKA-low) which has as one of its main science goals the study of the redshifted 21 cm line from the earliest phases of star and galaxy formation in the Universe. This 21 cm signal provides a new and unique window both on the time of the formation of the first stars and accreting black holes and the subsequent period of substantial ionization of the intergalactic medium. The signal will teach us fundamental new things about the earliest phases of structure formation, cosmology and even has the potential to lead to the discovery of new physical phenomena. Here we present a white paper with an overview of the science questions that SKA-low can address, how we plan to tackle these questions and what this implies for the basic design of the telescope.     

High Prevalence and Potential Impacts of Caligid Ectoparasites on Larval Atlantic Croaker (<Emphasis Type="Italic">Micropogonias undulatus</Emphasis>) in the Chesapeake Bay

Larvae of Atlantic croaker Micropogonias undulatus enter Mid-Atlantic Bight estuaries annually between September and February. A high prevalence of ectoparasitic crustacean infection of ingressing larval M. undulatus was observed in Chesapeake Bay; this ectoparasite was identified as a species of Lepeophtheirus within the copepod family Caligidae from analysis of cytochrome oxidase I sequences and scanning electron microscopy. Between 2007 and 2011, seasonal differences in prevalence were observed, with higher infection rates on fall ingressing larvae (20 % mean monthly infection rate) than in larvae entering the estuary in the winter (monthly infection rate of 6 %); the head region had the highest parasite attachment rate, being observed in 78 % of the infected fish. The potential effects of this ectoparasite on larval M. undulatus could include reductions in feeding (and thus growth) and increased susceptibility to predation.     

Multi-level assessment of chronic toxicity of estuarine sediments with the amphipod Gammarus locusta: I. Biochemical endpoints

We report on biomarker responses conducted as part of a multi-level assessment of the chronic toxicity of estuarine sediments to the amphipod Gammarus locusta. A companion article accounts for organism and population-level effects. Five moderately contaminated sediments from two Portuguese estuaries, Sado and Tagus, were assessed. Three of them were muddy and two were sandy sediments. The objective was to assess sediments that were not acutely toxic. Three of the sediments met this criterion, the other two were diluted (50% and 75%) with clean sediment until acute toxicity was absent. Following 28-d exposures, the amphipods were analysed for whole-body metal bioaccumulation, metallothionein induction (MT), DNA strand breakage (SB) and lipid peroxidation (LP). Two of the muddy sediments did not cause chronic toxicity. These findings were consistent with responses at organism and population levels that showed higher growth rates and improvement of reproductive traits for amphipods exposed to these two sediments. Two other sediments, one muddy and one sandy, exhibited pronounced chronic toxicity, affecting SB, MT induction (in muddy sediment), survival and reproduction. Potential toxicants involved in these effects were identified. The last sandy sediment exhibited some loss of DNA integrity, however growth was also enhanced. Present results, together with the organism/population-level data, and also benthic communities information, were analysed under a weight-of-evidence approach. By providing evidence of exposure (or lack of it) to contaminants in sediments, the biomarkers here applied assisted in distinguishing toxicants' impacts in test organisms from the confounding influence of other geochemical features of the sediments.     

Increasing the detail of European land use/cover data by combining heterogeneous data sets

ABSTRACT

Data on land use and land cover (LULC) are a vital input for policy-relevant research, such as modelling of the human population, socioeconomic activities, transportation, environment, and their interactions. In Europe, CORINE Land Cover has been the only data set covering the entire continent consistently, but with rather limited spatial detail. Other data sets have provided much better detail, but either have covered only a fraction of Europe (e.g. Urban Atlas) or have been thematically restricted (e.g. Copernicus High Resolution Layers). In this study, we processed and combined diverse LULC data to create a harmonised, ready-to-use map covering 41 countries. By doing so, we increased the spatial detail (from 25 to one hectare) and the thematic detail (by seven additional LULC classes) compared to the CORINE Land Cover. Importantly, we decomposed the class ‘Industrial and commercial units’ into ‘Production facilities’, ‘Commercial/service facilities’ and ‘Public facilities’ using machine learning to exploit a large database of points of interest. The overall accuracy of this thematic breakdown was 74%, despite the confusion between the production and commercial land uses, often attributable to noisy training data or mixed land uses. Lessons learnt from this exercise are discussed, and further research direction is proposed.     

Observing system experiments over the Atlantic Ocean with the REMO ocean data assimilation system (RODAS) into HYCOM

Ocean Dynamics - The Oceanographic Modeling and Observation Network (REMO) focuses on scientific and technological development of operational oceanography in Brazil considering both numerical...     

Environmental effects on the recruitment variability of nursery species

The recruitment variability of the marine fish species Dicentrarchus labrax, Platichthys flesus and Solea solea was evaluated in the Mondego estuary (Portugal) from 2003 to 2007. The relationships between sea surface temperature, NAO index, coastal wind speed and direction, precipitation and river runoff prior to the estuarine colonization and the abundance of 0-group fish were evaluated using gamma-based Generalized Linear Models. Dicentrarchus labrax and P. flesus 0-group decreased in abundance towards the end of the study period, while S. solea, despite low abundance in 2004, increased in abundance in 2007. For D. labrax, river runoff, precipitation and east–west wind were significant; for P. flesus, precipitation, river runoff and both north–south and east–west wind components were significant parameters, while for S. solea only river runoff was important. Results were compared with recent projections for climate change scenarios, to evaluate their effects on future recruitment levels.     

Impact of climate and hydrology on juvenile fish recruitment towards estuarine nursery grounds in the context of climate change

Larvae of various coastal fish undergo immigration from spawning grounds towards estuarine nurseries. Several environmental factors can have an important impact on survival at this stage making it crucial for recruitment. Generalized linear models were applied in order to investigate the relation between river drainage, sea surface temperature (SST), NAO index and the North-South wind component intensity, over the two months prior to the estuarine colonization peak, and the densities of Platichthys flesus, Dicentrarchus labrax, Diplodus vulgaris and Diplodus bellottii in the nursery grounds based on a discontinuous historical dataset (from 1978 to 2006), for the Tagus estuary. The relation between SST over the 12 months prior to the estuarine colonization peak and fish densities in the nurseries was also investigated, as it integrates the periods of spawning stock maturation, spawning and larval immigration. While SST over the prior 12 months was negatively correlated with the abundance of P. flesus, it was positively correlated with the abundance of D. bellottii. Abundance of D. vulgaris was positively correlated with SST in the two months prior to the estuarine colonization peak, while the abundance of D. labrax was positively correlated with river drainage. The relations between SST and the abundance of P. flesus, a cold-water species with declining densities, and the subtropical species D. bellottii and D. vulgaris, which are increasing in abundance, are indicative of species abundance alterations related to climate warming. Dicentrarchus labrax will probably also be affected by climate change because of lowered precipitation and consequently river drainage.     

Tectonic shortening and gravitational spreading in the Gulf of Cadiz accretionary wedge: Observations from multi-beam bathymetry and seismic profiling

The Gulf of Cadiz lies astride the complex plate boundary between Africa and Eurasia west of the Betic-Rif mountain belt. We report on the results of recent bathymetric swathmapping and multi-channel seismic surveys carried out here. The seafloor is marked by contrasting morphological provinces, spanning the SW Iberian and NW Moroccan continental margins, abyssal plains and an elongate, arcuate, accretionary wedge. A wide variety of tectonic and gravitational processes appear to have shaped these structures. Active compressional deformation of the wedge is suggested by folding and thrusting of the frontal sedimentary layers as well as basal duplexing in deeper internal units. There is evidence for simultaneous gravitational spreading occurring upslope. The very shallow mean surface and basal slopes of the accretionary wedge (1° each) indicate a very weak decollement layer, geometrically similar to the Mediterranean Ridge accretionary complex. Locally steep slopes (up to 10°) indicate strongly focused, active deformation and potential gravitational instabilities. The unusual surface morphology of the upper accretionary wedge includes “raft-tectonics” type fissures and abundant sub-circular depressions. Dissolution and/or diapiric processes are proposed to be involved in the formation of these depressions.     

Adsorption and affinity of Escherichia coli to different aggregate sizes of a silty clay soil

The sediments produced by water erosion are the main source of pollution of agricultural origin of surface water bodies. These sediments may be associated to bacteria, compromising the quality of nearby water bodies. Therefore, to understand this biological contamination, it is necessary to find out the adsorption capacity and bacterial affmity to aggregate sizes that may result in a differential sedimentation. To this end, in the present work, the distribution, adsorption capacity and affinity to different aggregate sizes of two strains of Escherichia coli in two liquid media of contrasting ionic strength were evaluated in a silty clay soil. The 〈2 μm fraction showed a higher proportion of bacteria than the other aggregate sizes （48%）, whereas among the fractions 〉2 μm, the 20-50μm fraction was the one that showed the highest bacterial adsorption in both liquid media （37.9%）. On the other hand, the highest values of bacterial affinity were found in the 20 to 50 lain fraction （coarse silt） in the low ionic strength media and 20--50 and 〉50 μm in the high ionic strength media. However, the bacterial strains used revealed only some trends in the modification of these variables. This work contributes to the development and implementation of strategies to mitigate pollution, such as control of sediment generation and its subsequent capture in filter strips.