High inorganic phosphate concentration in coral mucus and its utilization by heterotrophic bacteria in a Malaysian coral reef

Inorganic nutrient contents of mucus released by Acropora corals and its utilization by heterotrophic bacteria at several different hour intervals in the coral mucus were investigated at a coral reef in Malaysia. The dissolved inorganic phosphate (DIP) concentration was 135‐fold higher than in the ambient seawater, probably due to inorganic P release from the coral gut cavity. We experimentally confirmed that heterotrophic bacteria rapidly (within 8 h) consumed ca. 80% of the initial concentration of DIP derived from coral mucus. High DIP concentration in coral mucus may enhance heterotrophic bacterial production and associated carbon flow in the microbial loop of reef ecosystems.     

Acquisition design for direct reflectivity and velocity estimation from blended and irregularly sampled data

Blended acquisition along with efficient spatial sampling is capable of providing high-quality seismic data in a cost-effective and productive manner. While deblending and data reconstruction conventionally accompany this way of data acquisition, the recorded data can be processed directly to estimate subsurface properties. We establish a workflow to design survey parameters that account for the source blending as well as the spatial sampling of sources and detectors. The proposed method involves an iterative scheme to derive the survey design leading to optimum reflectivity and velocity estimation via joint migration inversion. In the workflow, we extend the standard implementation of joint migration inversion to cope with the data acquired in a blended fashion along with irregular detector and source geometries. This makes a direct estimation of reflectivity and velocity models feasible without the need of deblending or data reconstruction. During the iterations, the errors in reflectivity and velocity estimates are used to update the survey parameters by integrating a genetic algorithm and a convolutional neural network. Bio-inspired operators enable the simultaneous update of the blending and sampling operators. To relate the choice of survey parameters to the performance of joint migration inversion, we utilize a convolutional neural network. The applied network architecture discards suboptimal solutions among newly generated ones. Conversely, it carries optimal ones to the subsequent step, which improves the efficiency of the proposed approach. The resultant acquisition scenario yields a notable enhancement in both reflectivity and velocity estimation attributable to the choice of survey parameters.     

Long-term patterns in the diets of Japanese temperate bassLateolabrax japonicus larvae and juveniles in Chikugo estuarine nursery ground in Ariake Bay, Japan

Larval and juvenile Japanese temperate bass (Lateolabrax japonicus) samples were collected from a wide range of spatial gradients (covering a distance of approximately 30 km) in Chikugo estuary, Ariake Bay, Japan over a period of 8 yr (1997–2004) in order to observe changes in diet. Gut contents were studied by separating, identifying, counting, and estimating the dry weight of prey organisms. Copepod samples were collected during each cruise to observe the numerical composition, abundance, and biomass in the estuary. Considerable spatial and temporal variations were observed in copepod distributions in ambient water and the diets of the fish. Two distinctly different copepod assemblages were identified in the estuary: One in the upper estuarine turbidity maximum (ETM), dominated by a single speciesSinocalanus sinensis and the other in the lower estuary consisting of a multispecies assemblage, dominated byOithona davisae, Acartia omorii, Paracalanus parvus, andCalanus sinicus. The gut content composition of the fish in the upper estuary was dominated byS. sinensis, while in the lower estuary, it consisted ofP. parvus, O. davisae, andA. omorii. Within the size group analyzed (13.0–27.0 mm SL), the smaller individuals were found to feed on a mixed diet composed of smaller prey. The diets gradually shifted to bigger prey composed predominantly ofS. sinensis for larger size groups. Greater proportions of empty guts were recorded in the smaller individuals and dropped with increasing fish size. Higher dry biomass of copepods in the environment, as well as higher dry weights of gut contents, were recorded in the upper estuary, indicating that the upper estuarine ETM areas are important nursery grounds for the early life stages of the Japanese temperate bass. The early life stages of the Japanese temperate bass are adapted to use the upstream nursery grounds and ascending to the nursery areas to useS. sinensis is one of the key survival strategies of the Japanese temperate bass in the Chikugo estuary.     

Detection of Vibrio (Listonella) Anguillarum Porin Homologue Proteins and Their Source Bacteria from Coastal Seawater

The molecular distribution of dissolved proteins in seawater from coastal marine environments in Uranouchi Bay, Kochi Prefecture, is first reported in this article. Occurrence of bacteria-derived dissolved proteins and their source bacteria were examined using a probe of the antibody (anti-Omp35La) against a porin outer membrane protein (Omp35La) of the fish pathogenic bacterium Vibrio (Listonella) anguillarum. The electrophoretograms of dissolved proteins from coastal seawater showed a large number of discrete and individual proteins overlapped each other over a wide range of molecular masses indicating active processes in coastal environments in transferring proteins from organisms to the inanimate dissolved protein pool. Among the dissolved proteins, 37 kDa- and 18 kDa-proteins reacted with the Omp35La. In order to isolate the source bacteria of such dissolved proteins, bacteria from seawater and diseased fish were screened by colony Western blotting with anti-Omp35La. The reactive strains were further examined in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE)/Western blotting to verify the presence of Omp35La homologues among the outer membrane proteins of such strains. Outer membrane proteins reacting with anti-Omp35La were detected in only 4 strains of the 129 strains that were positive in the colony Western blotting. The level of possible source bacteria of 37 kDa- and 18 kDa-dissolved proteins was suggested to be 5–6 orders of magnitude lower than the total bacterial count. The present study leads us to hypothesize that a minor portion of the bacterial assemblage is responsible for the dissolved proteins in the coastal waters.     

Inter-annual simulation of global carbon cycle variations in a terrestrial–aquatic continuum

The advanced process-based model, National Integrated Catchment-based Eco-hydrology (NICE)-BGC, which incorporates the whole process of carbon cycling in land, was modified to include the feedback between soil organic content and overland carbon fluxes. It is a crucial and difficult task to evaluate the balance of the terrestrial carbon budget including the effect of inland water robustly. To accomplish this purpose, NICE-BGC was applied to quantify the global biogeochemical carbon cycle closely associated with the complex hydrological cycle during the 36 years between 1980 and 2015. The model demonstrated that the inter-annual variations of carbon cycle have been greatly affected by the extreme weather patterns. In particular, spatial distribution of temporal trends in riverine carbon fluxes and their relation to soil organic carbon (SOC) were analysed between different biomes and major river basins. Although there was a positive relationship between SOC and riverine flux of dissolved organic carbon and particulate organic carbon in the northern boreal region, it is difficult to see this relation in other regions. Further, the evaluation of potential controlling factors of temporal trends in SOC and fluvial carbon exports was also helpful to quantify the inter-annual variation or temporal trend caused by the various effects. SOC was more influenced by temperature variations, whereas riverine carbon exports were mainly determined by precipitation variations. Finally, net land flux including inland water (−1.49 ± 0.50 PgC/year) showed a slight decrease in the carbon sink in comparison with previous values (−2.33 ± 0.50 PgC/year). These results help to distinguish the carbon cycle in different river basins and to re-evaluate carbon cycle change explicitly including the effect of inland water because this effect has been so far implicitly included within the range of uncertainty in the Earth's global carbon cycle comprising land, oceans, and atmosphere.     

Flood monitoring, mapping and assessing capabilities using RADARSAT remote sensing, GIS and ground data for Bangladesh

Remote sensing is the most practical method available to managers of flood-prone areas for quantifying and mapping flood impacts. This study explored large inundation areas in the Maghna River Basin, around the northeastern Bangladesh, as determined from passive sensor LANDSAT data and the cloud-penetrating capabilities of the active sensors of the remote imaging microwave RADARSAT. This study also used passive sensor LANDSAT wet and dry images for the year 2000. Spatial resolution was 30 m by 30 m for comparisons of the inundation area with RADARSAT images. RADARSAT images with spatial resolution of 50 m by 50 m were used for frequency analysis of floods from 2000 to 2004. Time series images for 2004 were also used. RADARSAT remote sensing data, GIS data, and ground data were used for the purpose of flood monitoring, mapping and assessing. A supervised classification technique was used for this processing. They were processed for creating a maximum water extent map and for estimating inundation areas. The results of this study indicated that the maximum extent of the inundation area as estimated using RADARSAT satellite imaging was about 29, 900.72 km² in 2004, which corresponded well with the heavy rainfall around northeast region, as seen at the Bhairab Bazar station and with the highest water level of the Ganges–Brahmaputra–Meghna (GBM) Rivers. A composite of 5 years of RADARSAT inundation maps from 2000 to 2004, GIS data, and damage data, was used to create unique flood hazard maps. Using the damage data for 2004 and the GIS data, a set of damage maps was also created. These maps are expected to be useful for future planning and flood disaster management. Thus, it has been demonstrated that RADARSAT imaging data acquired over the Bangladesh have the ability to precisely assess and clarify inundation areas allowing for successful flood monitoring, mapping and disaster management.     

Effects of heavy oil in the developing spotted halibut, Verasper variegatus

It is well known that heavy oil (HO) on the sea surface causes serious problems in the aquatic environment. In particular, some species of teleosts which develop on the sea surface are thought to be affected by the HO which flows out from tankers or coastal industry. However, the toxicological effects of HO are not fully understood. We performed exposure experiments using the Pleuronectiformean fish, spotted halibut (Verasper variegatus), which is an important fishery resource in Japan. In course of the development, HO-exposed embryos showed remarkable delay in developmental processes including somite formation. We further observed abnormal development of the head morphology. Notably, treated embryos had relatively small eyes and craniofacial structures. These findings strongly suggest that HO seriously affects the cell proliferation and differentiation of the embryo. In addition, HO-exposed embryos showed abnormal neuronal development. We also performed the exposure in the larval stage. Treatment of post-hatching larvae with HO resulted in significantly greater mortality compared with controls. Through these observations, we finally conclude that HO is strongly toxic to halibut in their early life stages.     

Toxicogenomic analysis of immune system-related genes in Japanese flounder (Paralichthys olivaceus) exposed to heavy oil

Heavy oil contamination is one of the most important environmental issues. Toxicities of polycyclic aromatic hydrocarbons (PAHs), including immune toxicities, are well characterized, however, the immune toxic effects of heavy oil, as a complex mixture of PAHs, have not been investigated. In the present study, we selected Japanese flounder (Paralichthys olivaceus) as a model organism, and observed alteration of immune function by the exposure to heavy oil. To analyze the expression profiles of immune system-related genes, we selected 309 cDNAs from our flounder EST library, and spotted them on a glass slide. Using this cDNA array, alteration of gene expression profiles was analyzed in the kidneys of flounders exposed to heavy oil. Six Japanese flounders (mean body weight: 197 g) were acclimated to laboratory conditions at 19-20 degrees C. Three fish were exposed to heavy oil C (bunker C) at a concentration of 3.8 g/L for 3 days, and the others were kept in seawater without heavy oil and used as the control. After the exposure period, the fish were transferred into control seawater and maintained for 4 days, and then they were dissected and their kidneys were removed. Total RNA was extracted from the kidney samples to use in gene expression analyses. The microarray detected alteration of immune system-related genes in the kidneys of heavy oil-exposed flounders, including down-regulation of immunoglobulin light chain, CD45, major histocompatibility complex class II antigens and macrophage colony-stimulating factor precursor, and up-regulation of interleukin-8 and lysozyme. These results suggest that pathogen resistance may be weakened in heavy oil-exposed fish, causing a subsequent bacterial infection, and then proinflammatory genes may be induced as a defensive response against the infection. Additionally, we found candidate genes for use as biomarkers of heavy oil exposure, such as N-myc downstream regulated gene 1 and heat shock cognate 71 kDa proteins.     

Effects of heavy oil in the developing spotted halibut, Verasper variegatus

It is well known that heavy oil (HO) on the sea surface causes serious problems in the aquatic environment. In particular, some species of teleosts which develop on the sea surface are thought to be affected by the HO which flows out from tankers or coastal industry. However, the toxicological effects of HO are not fully understood. We performed exposure experiments using the Pleuronectiformean fish, spotted halibut (Verasper variegatus), which is an important fishery resource in Japan. In course of the development, HO-exposed embryos showed remarkable delay in developmental processes including somite formation. We further observed abnormal development of the head morphology. Notably, treated embryos had relatively small eyes and craniofacial structures. These findings strongly suggest that HO seriously affects the cell proliferation and differentiation of the embryo. In addition, HO-exposed embryos showed abnormal neuronal development. We also performed the exposure in the larval stage. Treatment of post-hatching larvae with HO resulted in significantly greater mortality compared with controls. Through these observations, we finally conclude that HO is strongly toxic to halibut in their early life stages.     

Distinctive stable isotope ratios in important zooplankton species in relation to estuarine salinity gradients: Potential tracer of fish migration

To assess the potential of stable isotope ratios as an indicator of fish migration within estuaries, stable isotope ratios in important zooplankton species were analyzed in relation to estuarine salinity gradients. Gut contents from migratory juveniles of the euryhaline marine fish Lateolabrax japonicus were examined along the Chikugo River estuary of the Ariake Sea, which has the most developed estuarine turbidity maximum (ETM) in Japan. Early juveniles in March and April preyed primarily on two copepod species; Sinocalanus sinensis at lower salinities and Acartia omorii at higher salinities. Late juveniles (standard length > 40 mm) at lower salinities preyed exclusively on the mysid Acanthomysis longirostris until July and complementarily on the decapod Acetes japonicus in August. These prey species were collected along the estuary during the spring–summer seasons of 2003 and 2004, and their carbon and nitrogen stable isotope ratios (δ¹³C and δ¹⁵N) were evaluated. The δ¹³C values of prey species were distinct from each other and were primarily depleted within and in close proximity to the ETM (salinity < 10); S. sinensis (−26.6‰) < Acanthomysis longirostris (−23.3‰) < Acartia omorii (−21.1‰) < Acetes japonicus (−18.5‰). The overall gradient of δ¹³C with salinity occurred for all prey species and showed minor temporal fluctuations, while it was not directly influenced by the δ¹³C values in particulate organic matter along the estuary. In contrast to δ¹³C, the δ¹⁵N values of prey species did not exhibit any clear relationship with salinity. The present study demonstrated that δ¹³C has the potential for application as a tracer of fish migration into lower salinity areas including the ETM.