iTRAQ-based proteomic profiling of the marine medaka (Oryzias melastigma) gonad exposed to BDE-47

A recent study demonstrated that 2,2′,4,4′-tetrabromodiphenyl ether (BDE-47) may have an adverse effect on the reproduction in marine medaka (Oryzias melastigma), but the molecular mechanisms remain largely unknown. In this study, we investigated the protein expression profiles of male and female gonads of O. melastigma exposed to dietary BDE-47 at two dosages (0.65 and 1.30 μg/g/day, respectively) for 21 days. Extracted proteins were labeled with iTRAQ and analyzed on a MALDI TOF/TOF analyzer, as results, 133 and 144 unique proteins were identified in testis and ovary, respective, and they exerted dose- and sex-dependent expression patterns. In testis, among the 42 differentially expressed proteins; down-regulation of histone variants and parvalbumins implicated BDE-47 may disrupt the spermatogenesis and induce sterility in fishes. In ovary, 38 proteins were differentially expressed; the elevation of vitellogenins and apolipoprotein A–I expression indicated BDE-47 acts as an estrogen-mimicking compound and led to reproductive impairment in O. melastigma.     

Early contamination of European flounder (Platichthys flesus) by PCDD/Fs and dioxin-like PCBs in European waters

Contamination levels and profiles of 7 polychlorinated-p-dioxins, 10 polychlorinated furans (PCDD/Fs) and 12 dioxin-like polychlorinated biphenyls (dl-PCBs) were investigated in juvenile European flounder (Platichthys flesus) captured in different nursery areas in the northeastern Atlantic coast across its geographical distribution range. The toxic equivalent concentrations (WHO-TEQ_fish) were also determined in order to evaluate which P. flesus population was more exposed to dioxin-like toxicity. Juveniles caught in the Sørfjord (Norway) showed the lowest WHO-TEQ_fish concentration (0.052 pg WHO-TEQ_fish g⁻¹ wet weight) whereas the highest value was observed in fish from the Wadden Sea (The Netherlands; 0.291 pg WHO-TEQ_fish g⁻¹ ww), mainly due to the greater contribution of 2,3,7,8-tetrachlorodibenzo-p-dioxin, the most toxic congener. Nonetheless, when comparing the results with existent tissue residue-based toxicity benchmarks, no adverse effects resulting from PCDD/Fs and dl-PCBs are expected to occur in flounder from the studied systems.     

Understanding river dune splitting through flume experiments and analysis of a dune evolution model

Forecasts of water level during river floods require accurate predictions of the evolution of river dune dimensions, because the hydraulic roughness of the main channel is largely determined by the bed morphology. River dune dimensions are controlled by processes like merging and splitting of dunes. Particularly the process of dune splitting is still poorly understood and – as a result – not yet included in operational dune evolution models. In the current paper, the process of dune splitting is investigated by carrying out laboratory experiments and by means of a sensitivity analysis using a numerical dune evolution model. In the numerical model, we introduced superimposed TRIAS ripples (i.e. triangular asymmetric stoss side‐ripples) on the stoss sides of underlying dunes as soon as these stoss sides exceed a certain critical length. Simulations with the model including dune splitting showed that predictions of equilibrium dune characteristics were significantly improved compared to the model without dune splitting. As dune splitting is implemented in a parameterized way, the computational cost remains low which means that dune evolution can be calculated on the timescale of a flood wave. Subsequently, we used this model to study the mechanism of dune splitting. Literature showed that the initiation of a strong flow separation zone behind a superimposed bedform is one of the main mechanisms behind dune splitting. The flume experiments indicated that besides its height also the lee side slope of the superimposed bedform is an important factor to determine the strength of the flow separation zone and therefore is an important aspect in dune splitting. The sensitivity analysis of the dune evolution model showed that a minimum stoss side length was required to develop a strong flow separation zone. Copyright © 2014 John Wiley & Sons, Ltd.     

Empirical prediction of coseismic landslide dam formation

In this study we develop an empirical method to estimate the volume threshold for predicting coseismic landslide dam formation using landscape parameters obtained from digital elevation models (DEMs). We hypothesize that the potential runout and volume of landslides, together with river features, determine the likelihood of the formation of a landslide dam. To develop this method, a database was created by randomly selecting 140 damming and 200 non‐damming landslides from 501 landslide dams and > 60 000 landslides induced by the M_w 7.9 2008 Wenchuan earthquake in China. We used this database to parameterize empirical runout models by stepwise multivariate regression. We find that factors controlling landslide runout are landslide initiation volume, landslide type, internal relief (H) and the H/L ratio (between H and landslide horizontal distance to river, L). In order to obtain a first volume threshold for a landslide to reach a river, the runout regression equations were converted into inverse volume equations by taking the runout to be the distance to river. A second volume threshold above which a landslide is predicted to block a river was determined by the correlation between river width and landslide volume of the known damming landslides. The larger of these two thresholds was taken as the final damming threshold. This method was applied to several landslide types over a fine geographic grid of assumed initiation points in a selected catchment. The overall prediction accuracy was 97.4% and 86.0% for non‐damming and damming landslides, respectively. The model was further tested by predicting the damming landslides over the whole region, with promising results. We conclude that our method is robust and reliable for the Wenchuan event. In combination with pre‐event landslide susceptibility and frequency–size assessments, it can be used to predict likely damming locations of future coseismic landslides, thereby helping to plan emergency response. Copyright © 2014 John Wiley & Sons, Ltd.     

Using a groundwater quality negotiation support system to change land-use management near a drinking-water abstraction in the Netherlands

A negotiation support system (NSS) was developed to solve groundwater conflicts that arose during land-use management. It was set up in cooperation with the stakeholders involved to provide information on the impact of land use, e.g., agriculture, nature (forested areas), recreation, and urban areas, on the quality of both infiltrating and abstracted groundwater. This NSS combined simulation programs that calculate (1) the concentrations of nitrate in shallow groundwater for each land-use area and (2) the transport of nitrate in the groundwater-saturated zone. The user interface of the NSS enabled scenario analyses. The NSS was validated at a drinking-water abstraction near Holten (the Netherlands) using a spatial planning process aimed at sustainable land-use and groundwater-resource management. Two land-use scenarios were considered: a base scenario reflecting the autonomous development and an adapted land-use scenario. The calculated results for shallow groundwater provided an explicit spatial overview of the impact of historical land use and N application on the quality of abstracted groundwater as well as insight into the impact of changes in land use and N application. Visualization of the conflicting interests of agriculture and the drinking-water abstraction helped all stakeholders accept the necessary changes in land use identified by the adapted land-use scenario of the NSS. These changes were included in the preferred land-use management option in the regional planning process, which has since been formalized. The NSS provided system insight, scoping analyses, and education, in addition to generating quantitative information on the impact of land-use functions on groundwater quality.     

Stratigraphic filtering and source penetration depth

Seismic exploration underneath highly heterogeneous layers such as basalt flows is possible by lowering the principal source frequency. Unfortunately this also reduces resolution. Wave‐localization theory is a multiple scattering theory that can be used to study stratigraphic filtering in chaotic lithologies. It predicts the apparent attenuation due to scattering of a plane wave traversing a layer with high velocity fluctuations. It can therefore predict the optimum principle source frequency in the trade‐off between loss of resolution and increased penetration depth. We show how this can be done with the help of a few statistical parameters derived from a well‐log analysis; namely, the average background velocity, the expected standard deviation in the velocity fluctuations, the typical scale length of the heterogeneities and the thickness of the basalt layer. In the likely situation that no local well logs exist, a multitude of scenarios can easily be examined at low cost.     

Simulating meander evolution of the Geul River (the Netherlands) using a topographic steering model

Active meandering rivers are capable of reworking and removing large quantities of valuable land. Therefore, understanding the characteristics of meandering rivers and predicting future meander behaviour can be of great value for local authorities. In this study, we apply a topographic steering meander model to the Geul River (southern Netherlands), using field data to calibrate the model. The present channel characteristics of the Geul River were mapped in the field. Cut‐banks were classified as erosive, unstable or stable. The model outcomes were compared with these field data. Several model runs were carried out, using different sets of parameter values. After studying the results and using the field data, we introduced the concept of a variable channel width in the simulation model. In reality, the river has different channel widths varying from 8 to more than 15 m. These widths are a linear function of local curvature. The model runs using a variable channel width show that the model is capable of predicting locations of lateral migration in conformity with observed active lateral migration and erosive banks. With both models, the sediment reworking time of the floodplain can be calculated. Floodplain reworking times of 200–300 years were calculated. In combination with the lateral migration rate, this reworking time is an important element in catchment sediment budget calculations. Copyright © 2007 John Wiley & Sons, Ltd.     

Pits,rifts and slumps: the summit structure of Piton de la Fournaise

A clear model of structures and associated stress fields of a volcano can provide a framework in which to study and monitor activity. We propose a volcano-tectonic model for the dynamics of the summit of Piton de la Fournaise (La Reunion Island, Indian Ocean). The summit contains two main pit crater structures (Dolomieu and Bory), two active rift zones, and a slumping eastern sector, all of which contribute to the actual fracture system. Dolomieu has developed over 100 years by sudden large collapse events and subsequent smaller drops that include terrace formation. Small intra-pit collapse scars and eruptive fissures are located along the southern floor of Dolomieu. The western pit wall of Dolomieu has a superficial inward dipping normal fault boundary connected to a deeper ring fault system. Outside Dolomieu, an oval extension zone containing sub-parallel pit-related fractures extends to a maximum distance of 225 m from the pit. At the summit the main trend for eruptive fissures is N80°, normal to the north–south rift zone. The terraced structure of Dolomieu has been reproduced by analogue models with a roof to width ratio of approximately 1, suggesting an original magma chamber depth of about 1 km. Such a chamber may continue to act as a storage location today. The east flank has a convex–concave profile and is bounded by strike-slip fractures that define a gravity slump. This zone is bound to the north by strike-slip fractures that may delineate a shear zone. The southern reciprocal shear zone is probably marked by an alignment of large scoria cones and is hidden by recent aa lavas. The slump head intersects Dolomieu pit and may slide on a hydrothermally altered layer known to be located at a depth of around 300 m. Our model has the summit activity controlled by the pit crater collapse structure, not the rifts. The rifts become important on the mid-flanks of the cone, away from pit-related fractures. On the east flank the superficial structures are controlled by the slump. We suggest that during pit subsidence intra-pit eruptions may occur. During tumescence, however, the pit system may become blocked and a flank eruption is more likely. Intrusions along the rift may cause deformation that subsequently increases the slump’s potential to deform. Conversely, slumping may influence the east flank stress distribution and locally control intrusion direction. These predictions can be tested with monitoring data to validate the model and, eventually, improve monitoring.     

Micromorphological Analysis of Coastal Sediments from Willapa Bay, Washington, USA: A Technique for Analysing Inferred Tsunami Deposits

Tsunami deposits are provisionally distinguished in the field on the basis of anomalous sand horizons, fining-up and fining-landward, coupled with organic-rich, fragmented `backwash' sediments. In this paper, micromorphological features of a sediment sequence previously interpreted as being of tsunami origin are described. These characteristics are shown to be consistent with the macro-scale features used elsewhere, but show additional details not seen in standard stratigraphies, including possible evidence for individual waves, possibly wave-magnitude progression, organic fragment alignment and intraclast microstructures. Although replication and more complete studies are needed, this analysis confirms the identification of a tsunami in Willapa Bay in ca.1700 AD, while demonstrating a widely applicable technique for confirming or refuting possible tsunami deposits.