Range-wide population structure of shortnose sturgeonAcipenser brevirostrum based on sequence analysis of the mitochondrial DNA control region

Riverine populations of shortnose sturgeon (Acipenser brevirostrum) once occurred in rivers and estuaries along the east coast of North America from the St. John River, New Brunswick, to the St. Johns River, Florida. Within this range, 19 population segments were identified by the U.S. Federal Shortnose Sturgeon Recovery Team; empirical data supporting this structure is limited. We obtained samples from 11 (12 including a small sample from the Cape Fear River, North Carolina) of these population segments and used PCR and direct sequence analysis of 440 base pairs of the mitochondrial DNA (mtDNA) control region to define the coast-wide genetic population structure of shortnose sturgeon. Collections from most population segments exhibited significant differences in haplotype frequencies with their nearest neighbors, including from the Ogeechee and Savannah Rivers, Georgia (despite the known movement of hatchery-reared offspring from the Savannah into the Ogeechee River). Collections from the Chesapeake Bay and Delaware River exhibited similar haplotype frequencies, suggesting that specimens collected in the Chesapeake Bay had dispersed from the Delaware River. Collections from the Kennebec River and Androscoggin River within a hypothesized single population segment did not exhibit significant differentiation of mtDNA haplotype frequencies. Haplotype frequencies were almost identical between collections from above and below the Holyoke Dam on the Connecticut River, indicating that these aggregations should be managed as a single unit. Our results support the population segment status afforded to shortnose sturgeon in at least the following 9 systems; St. John River, Kennebec-Androscoggin Rivers, upper-lower Connecticut River, Hudson River, Delaware River-Chesapeake Bay, Pee Dee River, Cooper River, Savannah River, and Ogeechee-Altamaha Rivers.     

A review of the plant-based traditions of the Cocoa Panyols of Trinidad

This paper reviews the plants used by Spanish speakers in Trinidad and Tobago as documented in a 1994 publication. The plant uses were reviewed to determine whether the plants and uses were different from other ethnic groups in Trinidad and the wider region and to draw conclusions from the review. The review covers 148 plants. With few exceptions, the plants were Native and so were the uses. Several plants have been little studied (Ambroisa cumanensis, Aristolochia rugosa, Bauhinia cumanensis, Bauhinia excisa, Begonia humilis, Croton conduplicatus, Croton flavens, Cyperus diffusus, Desmodium incanum, Fleurya aestuans, Heliconia bihai). The Cocoa Panyols retained the knowledge of at least two plants first described in the 1800s that were no longer mentioned to researchers in Trinidad and Tobago after 1981 by the rest of the population. The Cocoa Panyols preserved their cultural and linguistic heritage by concentrating on cocoa growing in rural areas and their movement from place to place to establish cocoa plantations may account for the uniformity of information on ethnomedicine in Trinidad, which additionally is similar to medicinal plant knowledge of the original populations of South America.     

Coupling Between the Coastal Ocean and Yaquina Bay,Oregon: Importance of Oceanic Inputs Relative to Other Nitrogen Sources

Understanding of the role of oceanic input in nutrient loadings is important for understanding nutrient and phytoplankton dynamics in estuaries adjacent to coastal upwelling regions as well as determining the natural background conditions. We examined the nitrogen sources to Yaquina Estuary (Oregon, USA) as well as the relationships between physical forcing and gross oceanic input of nutrients and phytoplankton. The ocean is the dominant source of dissolved inorganic nitrogen (DIN) and phosphate to the lower portion of Yaquina Bay during the dry season (May through October). During this time interval, high levels of dissolved inorganic nitrogen (primarily in the form of nitrate) and phosphate entering the estuary lag upwelling favorable winds by 2 days. The nitrate and phosphate levels entering the bay associated with coastal upwelling are correlated with the wind stress integrated over times scales of 4–6 days. In addition, there is a significant import of chlorophyll a to the bay from the coastal ocean region, particularly during July and August. Variations in flood-tide chlorophyll a lag upwelling favorable winds by 6 days, suggesting that it takes this amount of time for phytoplankton to utilize the recently upwelled nitrogen and be transported across the shelf into the estuary. Variations in water properties determined by ocean conditions propagate approximately 11–13 km into the estuary. Comparison of nitrogen sources to Yaquina Bay shows that the ocean is the dominant source during the dry season (May to October) and the river is the dominant source during the wet season with watershed nitrogen inputs primarily associated with nitrogen fixation on forest lands.     

Development of the Coastal Storm Modeling System (CoSMoS) for predicting the impact of storms on high-energy,active-margin coasts

The Coastal Storm Modeling System (CoSMoS) applies a predominantly deterministic framework to make detailed predictions (meter scale) of storm-induced coastal flooding, erosion, and cliff failures over large geographic scales (100s of kilometers). CoSMoS was developed for hindcast studies, operational applications (i.e., nowcasts and multiday forecasts), and future climate scenarios (i.e., sea-level rise + storms) to provide emergency responders and coastal planners with critical storm hazards information that may be used to increase public safety, mitigate physical damages, and more effectively manage and allocate resources within complex coastal settings. The prototype system, developed for the California coast, uses the global WAVEWATCH III wave model, the TOPEX/Poseidon satellite altimetry-based global tide model, and atmospheric-forcing data from either the US National Weather Service (operational mode) or Global Climate Models (future climate mode), to determine regional wave and water-level boundary conditions. These physical processes are dynamically downscaled using a series of nested Delft3D-WAVE (SWAN) and Delft3D-FLOW (FLOW) models and linked at the coast to tightly spaced XBeach (eXtreme Beach) cross-shore profile models and a Bayesian probabilistic cliff failure model. Hindcast testing demonstrates that, despite uncertainties in preexisting beach morphology over the ~500 km alongshore extent of the pilot study area, CoSMoS effectively identifies discrete sections of the coast (100s of meters) that are vulnerable to coastal hazards under a range of current and future oceanographic forcing conditions, and is therefore an effective tool for operational and future climate scenario planning.     

Lagrangian coherent structures in the California Current System – sensitivities and limitations

We report on numerical experiments to test the sensitivity of Lagrangian coherent structures (LCSs), found by identifying ridges of the finite-time Lyapunov exponent (FTLE), to errors in two systems representing the California Current System (CCS). First, we consider a synthetic mesoscale eddy field generated from Fourier filtering satellite altimetry observations of the CCS. Second, we consider the full observational satellite altimetry field in the same region. LCS are found to be relatively insensitive to both sparse spatial and temporal resolution and to the velocity field interpolation method. Strongly attracting and repelling LCS are robust to perturbations of the velocity field of over 20% of the maximum regional velocity. Contours of the Okubo–Weiss (OW) parameter are found to be consistent with LCS in large mature eddies in the unperturbed systems. The OW parameter is unable to identify eddies at the uncertainty level expected for altimetry observations of the CCS. At this expected error level, the FTLE method is reliable for locating boundaries of large eddies and strong jets. Small LCS features such as lobes are not well resolved even at low error levels, suggesting that reliable determination of lobe dynamics from altimetry will be problematic.     

Material Geographies and Postcolonialism

While postcolonial studies have inspired new ideas, a new language and a new theoretical inflection for a wide range of teaching and research in human geography, there have been few sustained discussions about what might constitute a postcolonial geography. This paper attempts to deal with this absence by exploring the possibilities of material geographies of postcolonialism. It suggests that geographers are particularly well placed to respond to criticisms of postcolonialism as remaining overwhelmingly textual, cultural and/or historical in focus by contributing towards a productive engagement between postcolonialism and the material realities of global inequalities, and towards a revivified political and ethical project. It explores how particular tactics might inform postcolonial methodologies within geography and makes some tentative suggestions on what a postcolonial political praxis might look like.     

Diets of short-tailed shearwaters in the southeastern Bering Sea

In the late 1990s, the southeastern Bering Sea exhibited a number of anomalous conditions, including a major die-off of short-tailed shearwaters (Puffinus tenuirostris), a trans-equatorial migrant that constitutes a major portion of the marine bird biomass in the southeastern Bering Sea. As part of a larger study of the ecological role of the inner or structural front over the southeastern Bering Sea shelf, in 1997–1999, we collected short-tailed shearwaters to determine diet composition. In spring 1997, we found that short-tailed shearwaters were consuming predominately the euphausiid Thysanoessa raschii, a diet expected on the basis of past studies. However, in subsequent years, short-tailed shearwater diets in spring contained increasingly larger proportions of fish, in particular, sandlance (Ammodytes hexapterus), as well as other species of euphausiids (T. inermis in 1999). In summer and fall collections, short-tailed shearwater diets were more varied than in spring, and included both fish (age-0 gadids, 21–35% by weight) and a wider variety of euphausiid species (T. inermis and T. spinifera). In summer and fall, crab zoea (August 1998) and copepods (August 1999) were eaten by shearwaters collected while feeding within the inner front. Diets in 1997–1999 were broader than those found in previous studies of short-tailed shearwaters over the inner shelf and Bristol Bay, which had documented diets composed almost solely of T. raschii. Our data are consistent with the hypothesis that euphausiids were less available to short-tailed shearwaters foraging over the middle and coastal domains of the southeastern Bering Sea in 1997–1999 than has previously been true. Our results are also consistent with hypothesis that the inner front can affect the availability of prey to shearwaters.     

Application of a coupled discontinuous–continuous Galerkin finite element shallow water model to coastal ocean dynamics

A coupled discontinuous–continuous Galerkin (DG–CG) shallow water model is compared to a continuous Galerkin generalized wave-continuity equation (GWCE) based model for the coastal ocean, whereby local mass imbalance typical of GWCE-based solutions is eliminated using the coupled DG–CG approach. Two mass imbalance indicators for the GWCE-based model are presented and analyzed. The indicators motivate discussion on the suitability of using a GWCE-based model versus the locally conservative coupled DG–CG model. Both realistic and idealized test problems for tide, wind, and wave-driven circulation form the basis of the study. For the problems studied, coupled DG–CG solutions retain the robustness of well-documented solutions from GWCE-based models and also capture the dynamics driven by small-scale, highly advective processes which are problematic for GWCE-based models. Issues associated with the coupled DG–CG model are explored, including increased cost due to increased degrees of freedom, the necessary application of slope limiters, as well as the actual coupling process.