Effective Roughness Calculated from Satellite-Derived Land Cover Maps and Hedge-Information used in a Weather Forecasting Model

In numerical weather prediction, climate and hydrologicalmodelling, the grid cell size is typically larger than the horizontal length scales of variations in aerodynamicroughness, surface temperature and surface humidity. These local land cover variations give rise to sub-gridscale surface flux differences. Especially the roughness variations can give a significantly differentvalue between the equilibrium roughness in each of the patches as compared to the aggregated roughness value,the so-called effective roughness, for the grid cell. The effective roughness is a quantity that secures thephysics to be well-described in any large-scale model. A method of aggregating the roughness step changesin arbitrary real terrain has been applied in flat terrain (Denmark) where sub-grid scale vegetation-drivenroughness variations are a dominant characteristic of the landscape. The aggregation model is a physicaltwo-dimensional atmospheric flow model in the horizontal domain based on a linearized version of theNavier Stoke equation. The equations are solved by the Fast Fourier Transformation technique, hence the codeis very fast. The new effective roughness maps have been used in the HIgh Resolution Limited Area Model(HIRLAM) weather forecasting model and the weather prediction results are compared for a number of casesto synoptic and other observations with improved agreement above the predictions based on currentstandard input. Typical seasonal springtime bias on forecasted winds over land of +0.5 m s^-1 and-0.2 m s^-1 in coastal areas is reduced by use of the effective roughness maps.     

Diagenetic origin of Basal Anhydrite in the Cretaceous Maha Sarakham salt: Khorat Plateau, NE Thailand

Development of a diagenetic anhydrite bed at the base of the Cretaceous Maha Sarakham Saline Formation (the `Basal Anhydrite' member) of the Khorat Plateau in north-eastern Thailand took place due to leaching and/or pressure dissolution of salt at the contact between an underlying active sandstone aquifer system and an overlying massive halite-dominated evaporite sequence. Basal evaporites composed of halite with intercalated anhydrite of the latter sequence are undergoing dissolution as a result of subsurface flushing, with anhydrite produced as the insoluble residue. The result is a 1·1 m thick interval of nodular anhydrite displaying unique, basin-wide continuity. Observed textures, petrographic features and chemical data from the anhydrite and associated authigenic minerals support the origin of the Basal Anhydrite Member as an accumulation residue from the dissolution of the Maha Sarakham salts. Petrographically, the anhydrite in this unit is made up of crystals that are blocky and recrystallized, sheared, generally elongated and broken, and is bounded at the bottom by organic-rich stylolite surfaces. Authigenic and euhedral dolomite and calcite crystals are associated with the anhydrite. Traces of pyrite, galena and chalcopyrite are present along the stylolite surfaces suggesting supply of fresh water from the underlying sandstone at highly reducing conditions of burial. The δ<sup>34</sup>S of sulphate in the Basal Anhydrite averages 15 ‰ (CDT) and falls within the isotopic composition of the anhydrite in the Cretaceous Maha Sarakham Formation proper and the Cretaceous values of marine evaporites. Measured δ<sup>18</sup>O in dolomite range from ?4·37 to ?14·26‰ (PDB) suggesting a re-equilibration of dolomite with basinal water depleted in <sup>18</sup>O and possible recrystallization of dolomite under relatively elevated temperatures. The δ<sup>13</sup>C, however, varies from +1·57 to ?2·53‰ (PDB) suggesting a contribution of carbon from oxidation of organic matter. This basal anhydrite bed, similar to basinwide beds found at the bottom of many giant evaporite sequences, has always been considered to be depositional. Here, at the base of the Maha Sarakham Formation, we demonstrate that the anhydrite is diagenetic in origin and was formed by accumulation of original anhydrite by dissolution of interbedded halite from waters circulating though the underlying aquifer: it represents an `upside-down' caprock.     

Origin of the acidic volcanics of the Tolfa district,Tuscan Province,central Italy: an elemental and Sr-isotopic study

Volcanic rocks from the southern part of the Tuscan Province, the Tolfa district, range in composition from dacites to rhyolites. They have relatively high contents of many incompatible elements and their ⁸⁷Sr/⁸⁶Sr ratios vary between 0.7129 and 0.7148 (28 analyses) with one analysis of 0.7112. The four major eruption centres of the district can be distinguished geochemically. It is shown that the variation of major and trace elements within each area can be explained by fractional crystallization without significant crustal assimilation. The geochemical patterns of the incompatible elements of the investigated volcanics have a close similarity to the alkaline undersaturated volcanics from the nearby Roman Province. The geochemical and isotopic similarity between the Tolfa volcanics and those of the Roman Province suggests a common origin for these components of the magmas. It is suggested that, while the origin of the LIL-element enrichment of the Roman Province magmas is a mantle which was metasomatised by fluids or melts derived from upper crustal material of sedimentary origin recycled into the mantle by subduction, the Tolfa volcanics were derived directly from the subducted material by melting.     

Xenobiotic-induced immunomodulation in the European flat oyster,Ostrea edulis

The presence of chemical contaminants in marine coastal waters is a major subject of concern since many molecules are potentially immunotoxic, even at low concentration. During the last decade, studies in sentinel species, such as the blue mussel, Mytilus edulis, or the Pacific oyster, Crassostrea gigas, have revealed that immunosuppressive responses can be related to xenobiotic exposure, in the laboratory and in the field. In the present study, European flat oysters were experimentally exposed to heavy metals, to investigate possible alterations of their immune function. Several hematological and functional parameters of hemocytes were measured by flow cytometry, a technique allowing rapid, sensitive, cell-by-cell measurements in large cell populations. Results reveal a depression of phagocytosis and several subcellular, physiological changes in oysters exposed to cadmium alone or to cadmium and copper, suggesting an overall alteration of the phagocytic function.     

Groundwater arsenic biogeochemistry-Key questions and use of tracers to understand arsenic-prone groundwater systems

Over 100,000,000 people worldwide are exposed to high arsenic groundwater utilised for drinking or cooking.The consequent global avoidable disease burden is estimated to be of the order of 100,000 avoidable deaths or more per annum from just direct exposures — i.e.excluding indirect exposure(from rice and other foods)and excluding morbidity.Notwithstanding 1000 s of papers published on arsenic(hydro)(bio)geochemistry,there remain a number of key outstanding questions to be addressed in relation to arsenic geoscience-these include questions related to:(i)the role of human activities —irrigation,agriculture and other land uses — on arsenic mobilisation in groundwaters;(ii)the specific sources,nature and role of organics,minerals and microbial communities involved in arsenic mobilisation;(iii)the relationship to microscopic to macroscopic scale geological(including tectonic)and evolution processes;(iv)unravelling the over-printing of multiple processes in complex highly heterogeneous aquifer systems and(v)using increasing understanding of the controls of arsenic mobility in groundwaters systems to informing improved locally-relevant remediation and mitigation approaches.This article further summarises how the 9 further papers in this Special Issue address some of these questions through the use of chemical and/or isotopic tracers.     

Thermokarst lakes and ponds on Mars in the very recent (late Amazonian) past

The history of water is fundamental to understanding the geological evolution of Mars and to questions concerning the possible development of life on the Red Planet. Today, Mars is cold and dry; its regolith is permanently frozen and except under highly localised and transient conditions, liquid water is unstable at the surface. Intriguingly, we have identified geological features that could be markers of very late-Amazonian “wet” or ice-rich periglacial processes in Utopia and western Elysium Planitiae: 1. rimless, flat-floored and lobate, sometimes scalloped, depressions that are suggestive of terrestrial alases (evaporated/drained thermokarst lakes); 2. small-sized polygonal patterned-ground (perhaps formed by thermal-contraction cracking and possibly underlain by ice wedges); and, 3. circular/near-circular raised-rim depressions (consistent in morphology and scale with pingo-scars) that are nested in rimless depressions. In terrestrial cold-climate, non-glacial environments, landscape assemblages of this type occur only in the presence of ice-rich permafrost.Commenting upon the origin of the putative periglacial features on Mars, most workers have suggested that sublimation and not evaporation has been the dominant process. By contrast, we propose that two key characteristics of the rimless depressions – inner terraces and orthogonally-oriented polygons – are markers of stable, ponded water and its slow loss by evaporation or drainage. If the raised-rim landforms are pingo scars, then this also points to boundary conditions that are supportive of stable liquid water.With regard to the relative age of the features described above, previous work identified some lobate depressions superposed on crater-rim gullies in the region (Soare et al., 2007). Gullies could be amongst the youngest geological features on Mars; superposed depressions point to an origin that is more youthful than the gullies. In turn, as some raised-rim landforms are superposed on rimless depressions, this is indicative of an origin that is even more recent than that of the depressions. Together with the geological evidence showing that the rimless depressions could have been formed by ponded water, the stratigraphy of the putative periglacial-landscape in this region suggests that the very late Amazonian period could have been warmer and wetter than had been thought hitherto.     

Test of rock physics models for prediction of seismic velocities in shallow unconsolidated sands: a well log data case‡

This paper tests the ability of various rock physics models to predict seismic velocities in shallow unconsolidated sands by comparing the estimates to P and S sonic logs collected in a shallow sand layer and ultrasonic laboratory data of an unconsolidated sand sample. The model fits are also evaluated with respect to the conventional model for unconsolidated sand. Our main approach is to use Hertz‐Mindlin and Walton contact theories, assuming different weight fractions of smooth and rough contact behaviours, to predict the elastic properties of the high porosity point. Using either the Hertz‐Mindlin or Walton theories with rough contact behaviour to define the high porosity endpoint gives an over‐prediction of the velocities. The P‐velocity is overpredicted by a factor of ～1.5 and the S‐velocity by a factor of ～1.8 for highly porous gas‐sand. The degree of misprediction decreases with increasing water saturation and porosity.Using the Hertz‐Mindlin theory with smooth contact behaviour or weighted Walton models gives a better fit to the data, although the data are best described using the Walton smooth model. To predict the properties at the lower porosities, the choice of bounding model attached to the Walton Smooth model controls the degree of fit to the data, where the Reuss bound best captures the porosity variations of dry and wet sands in this case since they are caused by depositional differences. The empirical models based on lab experiments on unconsolidated sand also fit the velocity data measured by sonic logs in situ, which gives improved confidence in using lab‐derived results.     

Diel cycles of hydrogen peroxide in marine bathing waters in Southern California, USA: In situ surf zone measurements

Hydrogen peroxide is photochemically produced in natural waters. It has been implicated in the oxidative-induced mortality of fecal indicator bacteria (FIB), a microbial water quality measure. To assess levels and cycling of peroxide in beach waters monitored for FIB, diel studies were carried out in surf zone waters in July 2009 at Crystal Cove State Beach, Southern California, USA. Maximum concentrations of 160–200 nM were obtained within 1 h of solar noon. Levels dropped at night to 20–40 nM, consistent with photochemical production from sunlight. Day-time production and night-time dark loss rates averaged 16 ± 3 nM h⁻¹ and 12 ± 4 nM h⁻¹ respectively. Apparent quantum yields averaged 0.07 ± 0.02. Production was largely dominated by sunlight, with some dependence on chromophoric dissolved organic matter (CDOM) levels in waters with high absorption coefficients. Peroxide levels measured here are sufficient to cause oxidative-stress-induced mortality of bacteria, affect FIB diel cycling and impact microbial water quality in marine bathing waters.     

Zircon Ce4+/Ce3+ ratios and ages for Yulong ore-bearing porphyries in eastern Tibet

Yulong ore-bearing porphyries, along the northwestern extension of the Red River–Ailao Shan fault system in eastern Tibet, consist of five porphyry deposits, containing a total of more than 8 million tons of copper resources. U–Th–Pb laser inductively coupled plasma mass spectrometry dating of zircon shows that the porphyries were emplaced in Early Tertiary (41.2–36.9 Ma), covering a period of ∼4.3 Ma, with formation ages decreasing systematically from northwest to southeast. The start of porphyry magmatism coincided with the onset of transpressional movement along the Red River–Ailao Shan fault system, implying a close link between these two events. Age sequence in intrusions can be plausibly explained by assuming that a region of melting in the lower northwestern plate moved southeasternward along the Tuoba–Mangkang fault relative to the upper plate. Zircon grains from the Yulong ore-bearing porphyries have higher Ce⁴⁺/Ce³⁺ than those from barren porphyries in the region. This suggests that the ore-bearing porphyries crystallized from a relatively oxidized magma, which has important implications for future ore exploration in the region and other Cu deposits in convergent margin environments in general.