Enzymatic microbial Mn(II) oxidation and Mn biooxide production in the Guaymas Basin deep-sea hydrothermal plume

Microorganisms play important roles in mediating biogeochemical reactions in deep-sea hydrothermal plumes, but little is known regarding the mechanisms that underpin these transformations. At Guaymas Basin (GB) in the Gulf of California, hydrothermal vents inject fluids laden with dissolved Mn(II) (dMn) into the deep waters of the basin where it is oxidized and precipitated as particulate Mn(III/IV) oxides, forming turbid hydrothermal “clouds”. Previous studies have predicted extremely short residence times for dMn at GB and suggested they are the result of microbially-mediated Mn(II) oxidation and precipitation. Here we present biogeochemical results that support a central role for microorganisms in driving Mn(II) oxidation in the GB hydrothermal plume, with enzymes being the primary catalytic agent. dMn removal rates at GB are remarkably fast for a deep-sea hydrothermal plume (up to 2 nM/h). These rapid rates were only observed within the plume, not in background deep-sea water above the GB plume or at GB plume depths (∼1750-2000 m) in the neighboring Carmen Basin, where there is no known venting. dMn removal is dramatically inhibited under anoxic conditions and by the presence of the biological poison, sodium azide. A conspicuous temperature optimum of dMn removal rates (∼40 °C) and a saturation-like (i.e. Michaelis-Menten) response to O₂ concentration were observed, indicating an enzymatic mechanism. dMn removal was resistant to heat treatment used to select for spore-forming organisms, but very sensitive to low concentrations of added Cu, a cofactor required by the putative Mn(II)-oxidizing enzyme. Extended X-ray absorption fine structure spectroscopy (EXAFS) and synchrotron radiation-based X-ray diffraction (SR-XRD) revealed the Mn oxides to have a hexagonal birnessite or δ-MnO₂-like mineral structure, indicating that these freshly formed deep-sea Mn oxides are strikingly similar to primary biogenic Mn oxides produced by laboratory cultures of bacteria. Overall, these results reveal a vigorous Mn biogeochemical cycle in the GB hydrothermal plume, where a distinct microbial community enzymatically catalyzes rapid Mn(II) oxidation and the production of Mn biooxides.     

Determination of Rare Earth Elements, Sc, Y, Zr, Ba, Hf and Th in Geological Samples by ICP-MS after Tm Addition and Alkaline Fusion

We present a revised method for the determination of concentrations of rare earth (REE) and other trace elements (Y, Sc, Zr, Ba, Hf, Th) in geological samples. Our analytical procedure involves sample digestion using alkaline fusion (NaOH-Na₂O₂) after addition of a Tm spike, co-precipitation on iron hydroxides, and measurement by sector field-inductively coupled plasma-mass spectrometry (SF-ICP-MS). The procedure was tested successfully for various rock types (i.e., basalt, ultramafic rock, sediment, soil, granite), including rocks with low trace element abundances (sub ng g⁻¹). Results obtained for a series of nine geological reference materials (BIR-1, BCR-2, UB-N, JP-1, AC-E, MA-N, MAG-1, GSMS-2, GSS-4) are in reasonable agreement with published working values.     

Impact of Terrain Heterogeneity on Coherent Structure Properties: Numerical Approach

A three-dimensional large-eddy simulation (LES) model, which includes the effects of plant–atmosphere interactions, is used to study the effects of surface inhomogeneities on near-surface coherent structures over an open field and behind a forest canopy. These simulated conditions are representative of two wind sectors of the Site Instrumental de Recherche par Télédétection Atmosphérique (SIRTA) experimental site at the Institut Pierre Simon Laplace, Palaiseau, France. Coherent structure properties deduced from wavelet transforms of the simulated near-surface vertical velocity time series are not modified by upstream terrain heterogeneities, in agreement with site measurements. This feature is related to the nature of structures detected from the vertical velocity time series. The turbulence close to the surface seems composed of both local coherent structures and large coherent structures reflecting outer-layer properties, which depend on the overall surface heterogeneity or upstream heterogeneity. It is argued that the streamwise velocity is representative of these large outer-layer structures that impinge onto the ground through a top-down mechanism as identified through the space–time correlation of the wind velocity components. In contrast, the vertical velocity is more representative of small structures resulting from the impingement of the large outer-layer structures. These small structures represent locally-generated, active turbulence, which adjusts rapidly to local surface conditions, and consequently they are only weakly dependent on upstream heterogeneities.     

Short polarity intervals within the Matuyama: transitional field records from hydraulic piston cored sediments from the North Atlantic

Detailed sampling of two short magnetozones within the Matuyama Chronozone recorded at DSDP Site 609 (49.86°N, 335.77°E) confirms that one, the Cobb Mountain Subchronozone (1.12 Ma), is a very short, full normal polarity interval and that the other, the older interval, is a record of a geomagnetic excursion which occurred at approximately 1.55 Ma. The Cobb Mountain Subchron lasted approximately 25,000 years, one third the duration of the Jaramillo Subchron. The normal polarity interval is bounded by two transition zones which document an antisymmetry in the sequence of directions in the reverse to normal and normal to reverse polarity transitions. We interpret the antisymmetry as reflecting a dependence upon the sense of the reversal, without significant changes in the relative contributions of non-dipole terms. The polarity interval recorded at 1.55 Ma lasted only 8,800 years with what may be regarded as full polarity directions observed across only 3 cm of stratigraphic section. This feature is interpreted as an excursion of the geomagnetic field and appears to be correlative with the Gilsa Subchron. Similarities between the transition bounding these two magnetozones suggest that these features occur as the result of the same process or triggering mechanisms in the earth's outer core.     

Development of a rain‐on‐snow detection algorithm using passive microwave radiometry

Currently observed climate warming in the Arctic has numerous consequences. Of particular relevance, the precipitation regime is modified where mixed and liquid precipitation can occur during the winter season leading to rain‐on‐snow (ROS) events. This phenomenon is responsible for ice crust formation, which has a significant impact on ecosystems (such as biological, hydrological, ecological and physical processes). The spatially and temporally sporadic nature of ROS events makes the phenomenon difficult to monitor using meteorological observations. This paper focuses on the detection of ROS events using passive microwave (PMW) data from a modified brightness temperature (T_B) gradient approach at 19 and 37 GHz. The approach presented here was developed empirically for observed ROS events with coincident ground‐based PMW measurements in Sherbrooke, Quebec, Canada. It was then tested in Nunavik, Quebec, with the Advanced Microwave Scanning Radiometer for the Earth Observing System (AMSR‐E). We obtained a detection accuracy of 57, 71 and 89% for ROS detection for three AMSR‐E grid cells with a maximum error of 7% when considering all omissions and commissions with regard to the total number of AMSR‐E passes throughout the winter period. Copyright © 2016 John Wiley & Sons, Ltd.     

北京大学陆面过程模式PKULM(Peking University Land Model)介绍及检验

陆面过程模式是气候模式和天气模式的核心组成部分之一.在土壤-植被-大气耦合模式(Soil-Plant-Atmosphere Model, SPAM)的基础上,发展了新一代北京大学陆面过程模式PKULM(Peking University Land Model).本文首先介绍了PKULM的辐射传输、湍流输送、光合作用、土壤水热输送等过程的参数化方案;采用隐式迭代计算框架,发展并应用了一个快速的线性方程组求解算法,提高了模式计算稳定性;提出并使用了二分搜索算法计算气孔阻抗,避免了CLM(Community Land Model)等使用的迭代方法在干旱区不稳定的情况,提高了模式的适用性;采用水势为基础的土壤水分扩散方程,使模式能够模拟土壤饱和区的水分输送过程,为进一步与水文过程模式耦合奠定了基础;还发展了一个地表积水与径流过程的机理模型,提高了模式对地表水分平衡过程的模拟能力;最后,使用"中国西北干旱区陆-气相互作用观测试验"平凉站的资料对模式进行了检验并与NOAH(National Center for Environmental Prediction, Oregon State University, Air Force, and Hydrology Lab model)陆面过程模式的模拟结果进行了比较,结果表明PKULM能够较好地模拟西北半干旱区农田下垫面地气交换过程.