An analysis of 3.5 kHz acoustic reflections and sediment physical properties

Near-bottom normal incidence acoustic reflection data and sediment physical property data are used to study the relationships between acoustic reflections and sediment physical properties. A pinger-hydrophone experiment was performed to obtain the necessary acoustic reflection data. In addition, a standard piston core was retrieved in the acoustic survey area for physical property analysis. The piston core was sampled and 13 properties were measured at 55 locations within the top 12 m of the core. Correlation studies amongst the sediment physical properties resulted in the following strong correlations: acoustic impedance ($\text{Z}$) and porosity ($\text{N}$), (0.96); water content ($\text{WC}$) and $\text{Z}$, (0.95); bulk density ($\text{BD}$) and $\text{Z}$, (0.99).The empirical orthonormal function (EOF) method was employed for acoustic signal analysis. This method assumes no a-priori models of the sediment or causality. The EOF method reduced the acoustic data to 8 functions that contained 97.6% of the sample variance. The EOFs were subsequently analysed by using cepstrum analysis which reveals time delay information and enhances detecting zones of reflectivity. The result of the sediment physical property and cepstrum analysis indicates that zones of reflectivity are essentially zones of relatively high acoustic impedance, low porosity, and low phi (high mean grain size).     

Zooplankton and the oceanography of the eastern tropical Pacific: A review

We review the spatial and temporal patterns of zooplankton in the eastern tropical Pacific Ocean and relationships with oceanographic factors that affect zooplankton distribution, abundance and trophic relationships. Large-scale spatial patterns of some zooplankton groups show broad coincidence with surface water masses, circulation, and upwelling regions, in agreement with an ecological and dynamic partitioning of the pelagic ecosystem. The papers reviewed and a new compilation of zooplankton volume data at large-scale show that abundance patterns of zooplankton biomass have their highest values in the upwelling regions, including the Gulf of Tehuantepec, the Costa Rica Dome, the equatorial cold tongue, and the coast of Peru.Some of the first studies of zooplankton vertical distribution were done in this region, and a general review of the topic is presented. The possible physiological implications of vertical migration in zooplankton and the main hypotheses are described, with remarks on the importance of the oxygen minimum zone (OMZ) as a barrier to both the vertical distribution and migration of zooplankton in the region. Recent results, using multiple-net gear, show that vertical distribution is more complex than previously thought. There are some well-adapted species that do live and migrate within the OMZ.Temporal patterns are reviewed and summarized with historical data. Seasonal variations in zooplankton biomass follow productivity cycles in upwelling areas. No zooplankton time series exist to resolve ENSO effects in oceanic regions, but some El Niño events have had effects in the Peru Current ecosystem. Multidecadal periods of up to 50 years show a shift from a warm sardine regime with a low zooplankton biomass to a cool anchovy regime in the eastern Pacific with higher zooplankton biomasses. However, zooplankton volume off Peru has remained at low values since the 1972 El Niño, a trend opposite to that of anchoveta biomass since 1984.Studies of trophic relations emphasize the difference in the productivity cycle in the eastern tropical Pacific compared to temperate or polar ecosystems, with no particular peaks in the stocks of either zooplankton or phytoplankton. Productivity is more dependent on local events like coastal upwelling or water circulation, especially in the equatorial countercurrent and around the equatorial cool-tongue. Micrograzers are very important in the tropics as are predatory mesozooplankton. Up to 70% of the daily primary productivity is consumed by microzooplankton, which thus regulates the phytoplankton stocks. Micrograzers are an important link between primary producers, including bacteria, and mesozooplankton, constituting up to 80% of mesozooplankton food. Oceanography affects zooplankton trophic relationships through spatial–temporal effects on primary productivity and on the distributions of metabolic factors, food organisms, and predators. This paper is part of a comprehensive review of the oceanography of the eastern tropical Pacific.     

Sustainable shellfish aquaculture in Saldanha Bay,South Africa

The carrying capacity for bivalve shellfish culture in Saldanha Bay, South Africa, was analysed through the application of the well-tested EcoWin ecological model, in order to simulate key ecosystem variables. The model was set up using: (i) oceanographic and water-quality data collected from Saldanha Bay, and (ii) culture-practice information provided by local shellfish farmers. EcoWin successfully reproduced key ecological processes, simulating an annual mean phytoplankton biomass of 7.5 µg Chl a l^–1 and an annual harvested shellfish biomass of about 3 000 tonnes (t) y^–1, in good agreement with reported yield. The maximum annual carrying capacity of Small Bay was estimated as 20 000 t live weight (LW) of oysters Crassostrea gigas, or alternatively 5 100 t LW of mussels Mytilus galloprovincialis, and for Big Bay as 100 000 t LW of oysters. Two production scenarios were investigated for Small Bay: a production of 4 000 t LW y^–1 of mussels, and the most profitable scenario for oysters of 19 700 t LW y^–1. The main conclusions of this work are: (i) in 2015–2016, both Small Bay and Big Bay were below their maximum production capacity; (ii) the current production of shellfish potentially removes 85% of the human nitrogen inputs; (iii) a maximum-production scenario in both Big Bay and Small Bay would result in phytoplankton depletion in the farmed area; (iv) increasing the production intensity in Big Bay would probably impact the existing cultures in Small Bay; and (v) the production in Small Bay could be increased, resulting in higher income for farmers.     

Seasonal variations of water system distribution and flow patterns in the southern sea area of Hokkaido,Japan

Hydrographic data and composite current velocity data (ADCP and GEK) were used to examine the seasonal variations of upper-ocean flow in the southern sea area of Hokkaido, which includes the “off-Doto” and “Hidaka Bay” areas separated by Cape Erimo. During the heating season (April–September), the outflow of the Tsugaru Warm Current (TWC) from the Tsugaru Strait first extends north-eastward, and then one branch of TWC turns to the west along the shelf slope after it approaches the Hidaka Shelf. The main flow of TWC evolves continuously, extending eastward as far as the area off Cape Erimo. In the late cooling season (January–March), part of the Oyashio enters Hidaka Bay along the shallower part of the shelf slope through the area off Cape Erimo, replacing almost all of the TWC water, and hence the TWC devolves. It is suggested that the bottom-controlled barotropic flow of the Oyashio, which may be caused by the small density difference between the Oyashio and the TWC waters and the southward migration of main front of TWC, permits the Oyashio water to intrude along the Hidaka shelf slope.     

Effects of water-borne copper on metallothionein and lipid peroxidation in the marine amphipod Gammarus locusta

The aim of the current work was to determine over 10 days the effects of water-borne exposure of the marine amphipod Gammarus locusta to 4 microgCu l(-1) on the metallothionein (MT; measured by differential pulse polarography) protection system and lipid peroxidation (LP: thiobarbituric acid-reactive malondialdehyde equivalents) as a measure of oxidative damage. MT levels in exposed animals increased significantly at day 2 (36% > control; P < 0.001) and remained high at days 6 and 10 (55 and 38%, respectively, P < 0.001). The maximum level of MT at day 6 coincided with the highest Cu body-burden. LP increased within I day of exposure, indicative of Cu as an oxidative stressor. However, in contrast to MT, the highest LP level was seen at day 4 (68% > control, P < 0.001) before returning to control values by day 6, indicating a protective role of MT against the pro-oxidant effects of Cu.     

Longshore drift estimation using fluorescent tracers: New insights from an experiment at Comporta Beach, Portugal

A fluorescent sand-tracer experiment was performed at Comporta Beach (Portugal) with the aim of acquiring longshore sediment transport data on a reflective beach, the optimization of field and laboratory tracer procedures and the improvement of the conceptual model used to support tracer data interpretation.

The field experiment was performed on a mesotidal reflective beach face in low energetic conditions (significant wave height between 0.4 and 0.5 m). Two different colour tracers (orange and blue) were injected at low tide and sampled in the two subsequent low tides using a high resolution 3D grid extending 450 m alongshore and 30 m cross-shore. Marked sand was detected using an automatic digital image processing system developed in the scope of the present experiment.

Results for the two colour tracers show a remarkable coherence, with high recovery rates attesting data validity. Sand tracer displayed a high advection velocity, but with distinct vertical distribution patterns in the two tides: in the first tide there was a clear decrease in tracer advection velocity with depth while in the second tide, the tracer exhibited an almost uniform vertical velocity distribution. This differing behaviour suggests that, in the first tide, the tracer had not reached equilibrium within the transport system, pointing to a considerable time lag between injection and complete mixing. This issue has important implications for the interpretation of tracer data, indicating that short term tracer experiments tend to overestimate transport rates. In this work, therefore, longshore estimates were based on tracer results obtained during the second tide.

The estimated total longshore transport rate at Comporta Beach was 2 × 10^− 3 m³/s, more than four times larger than predicted using standard empirical longshore formulas. This discrepancy, which results from the unusually large active moving layer observed during the experiment, confirms the idea that most common longshore transport equations under-estimate total sediment transport in plunging/surging waves.     

Vertical distribution of the macrobenthic community and its relationships to trace metals and natural sediment characteristics in the lower Douro estuary, Portugal

Vertical distribution (0–15 cm) of the macrobenthic community and its relationships to natural sediment characteristics and trace metal contents and bioavailability were studied at five locations in the lower Douro estuary, Portugal. An analysis of vertical metal distribution, for the interpretation of anthropogenic impact on the estuarine sediments, was also investigated. Sediment characterisation included organic matter, grain size, metals (Al, Fe, Cu, Pb, Cr, Ni, Cd, Zn and Mn), acid volatile sulphide (AVS) and simultaneously extracted metals (SEM). The macrobenthic community had low diversity (14 species), was dominated by small size opportunists and seemed to be controlled mainly by natural factors such as grain size distribution, Al and Fe contents and sediment depth. The vertically heterogeneous distribution of macrobenthic community appears to affect redox status of the sediments and consequently metal bioavailability. Despite anthropogenic contamination in terms of Zn, Cu, Pb, Cr and Ni having already been detected in the north bank, the analysis of vertical distribution was essential for the identification of current anthropogenic contamination in terms of Zn, Pb and Cd in the south bank.     

Spatial variability in growth and reproduction of the Pacific oyster Crassostrea gigas (Thunberg, 1793) along the west European coast

The Pacific oyster Crassostrea gigas was introduced in Europe for commercial purposes in the mid 1960s. It was initially thought that low winter temperatures would restrain this species' reproduction and settlement; however, its present distribution in areas where no introduction has taken place suggests that natural invasion and expansion has occurred. Along the European coast, wild populations of Pacific oysters are already found from northern Germany to southern Portugal. Whether C. gigas will continue to further expand through northern waters will depend on its physiological performance. In this study, the performance of wild oyster populations has been studied in terms of growth and reproduction at three stations: La Rochelle (France; 46°N), Yerseke (Oosterschelde estuary, The Netherlands, 51°N), and Texel (Wadden Sea estuary, The Netherlands, 53°N). The French population had the lowest somatic-shell mass ratio and an increase in maximum shell length, somatic and gonadal mass was observed from France to the Netherlands. In addition, mean oocyte diameter decreased significantly from south to north. The combination of increasing gonadal mass and decreasing oocyte volume suggests an increasing reproductive output in terms of egg numbers from France to The Netherlands. Differences in temperature between locations will at least be partly responsible for the observed patterns; however, other environmental factors (such as food availability, predation pressure, sediment type and/or seston concentration) cannot be excluded. Since smaller eggs (oocytes) are thought to have a longer development time, the environmental conditions along the Dutch coast may result in increased larval dispersal and possibly in further population expansion.