Diatoms grow faster using ammonium in rapidly flushed eutrophic Dokai Bay,Japan

The importance of the nitrogen source for phytoplankton growth in a highly eutrophic embayment, Dokai Bay, was investigated. The DIN concentration often exceeded 100 μM of which 40–70% was NH₄ ⁺. During two incubation experiments, the natural assemblage of mainly diatoms took up NH₄ ⁺ instead of NO₃ ⁻. The growth of two Skeletonema species isolated in Dokai Bay were significantly faster on NH₄ ⁺ (1.86 and 1.27 div. d⁻¹ respectively) than on NO₃ ⁻ (1.55 and 1.04 div. d⁻¹ respectively). Our results indicated that these diatoms could grow faster by using NH₄ ⁺ compared to NO₃ ⁻ in this eutrophic bay.     

GeoSurveillance: a GIS-based system for the detection and monitoring of spatial clusters

This article introduces a software package named GeoSurveillance that combines spatial statistical techniques and GIS routines to perform tests for the detection and monitoring of spatial clustering. GeoSurveillance provides both retrospective and prospective tests. While retrospective tests are applied to spatial data collected for a particular point in time, prospective tests attempt to incorporate the dynamic nature of spatial patterns via analyzing time-series data to detect emergent clusters as quickly as possible. This article will outline the structure of GeoSurveillance as well as describe the statistical cluster detection methods implemented in the software. It concludes with an illustration of the use of the software to analyze the spatial pattern of low birth weights in Los Angeles County, California.      

Spatial partitioning between species of the phytoplankton-feeding guild on an estuarine intertidal sand flat and its implication on habitat carrying capacity

The fishery yield of Manila clams, Ruditapes philippinarum, increased considerably in the 1970s but has decreased rapidly since the middle 1980s on extensive intertidal sand flats in Ariake Sound (Kyushu, Japan). A survey conducted in 2004 on a 3.4-km² sand flat located in the central part of the Sound (Shirakawa sand flat) revealed four dominant species: two thalassinidean shrimps (Upogebia major and Nihonotrypaea japonica), which are deep-reaching burrow dwellers with strong bioturbation activities, and two bivalves (Mactra veneriformis and R. philippinarum). All four species belong to a phytoplankton (diatom)-feeding guild. In the late 1970s, the Manila clam population prevailed in high densities over the entire sand flat, whereas its distribution was restricted to the lowest quarter of the shore in 2004. In contrast, the population sizes and zones of occurrence of the other phytoplankton feeders have expanded in the absence of R. philippinarum, perhaps an indication of competitive release. After establishment, effects of the thalassinidean shrimps on sediment stability appear to have further reduced clam abundances. Across the sand flat in 2004, wet weight population biomass estimates for N. japonica, U. major, M. veneriformis, and R. philippinarum (whole body for shrimps and soft tissue for bivalves) were 304, 111, 378, and 234 tonnes, respectively. Based on Manila clam fishery yield records from Shirakawa, the carrying capacity of the Shirakawa sand flat in the late 1970s was estimated to be two times greater than the sum value for the whole phytoplankton-feeding guild in 2004. It is hypothesized that (1) the amount of phytoplankton determines the carrying capacity for the benthic community on the Shirakawa sand flat, with both phytoplankton and benthic biomass at maxima in the late 1970s, and (2) the subsequent increases in competition for space have caused further declines in the Manila clam population biomass to approximately one-eighth of its past value.     

Dynamics of elastically moored floating objects

The two-dimensional problem of wave transformation by, and motions of, moored floating objects is solved numerically as a boundary value problem by direct use of Green's identity formula for a potential function. The cross-sectional shape of the floating object, the bottom configuration and the mooring arrangements may be all arbitrary. For a given incident wave, the three modes of body motion, the wave system and mooring forces are all solved at the same time. A laboratory experiment is conducted to verify the theory. Generally good agreements between the theory and experiments are obtained as long as the viscous damping due to flow separation is small. A numerical experiment indicates that a conventional sluck mooring is to worsen the wave attenuation by a floating breakwater and that a properly arranged elastic mooring can considerably improve the wave attenuation by a floating breakwater.     

Abundance and biomass of scyphomedusae, Aurelia aurita and Chrysaora melanaster, and Ctenophora, Bolinopsis mikado, with estimates of their feeding impact on zooplankton in Tokyo Bay, Japan

The abundance of a scyphomedusae, Aurelia aurita and Chrysaora melanaster, and a ctenophore, Bolinopsis mikado, in Tokyo Bay was investigated from 1995 to 1997. Aurelia aurita appeared throughout the year with a peak in abundance occurring from spring to summer. The average abundance and biomass during this period for the three successive years was 4.8, 43.8 and 3.2 ind. m⁻², and 1.02, 10.0 and 0.42 gC m⁻², respectively. The values in 1995 and 1997 were comparable with those previously reported for A. aurita abundance from 1990 to 1992. Values were very high in 1996, but the size composition of the bell diameter did not differ from other years, which suggested the absence of food limitation for A. aurita in 1996. C. melanaster was scarce over the survey period (<1.0 ind. m⁻²) while Bolinopsis mikado was more abundant during September to December, with maximum values of 172 ind. m⁻² and 0.33 gC m⁻² observed in December 1997. The weight-specific clearance rate for A. aurita on zooplankton (mainly copepods and their nauplii) was 0.16 ± 0.05 lgWW⁻¹ h⁻¹ (n = 13). Population clearance rate peaked from spring to summer, with average levels of 14.2%, 162% and 5.0% day⁻¹ obtained from spring to summer for respective years. Population clearance rates for B. mikado, calculated based on minimum carbon requirements, was 7.1% day⁻¹ in December 1997. Consequently, the trophic role of gelatinous zooplankton as predators in Tokyo Bay is important all the year round, considering the high impact of A. aurita from spring to summer and B. mikado from autumn to winter.     

Internal characteristics and numerical analysis of plunging breaker on a slope

Many investigations about the direct measurements of velocities to clarify the internal mechanism of the breaker have been carried out as a result of recent progress in the measuring techniques.This research attempts to clarify the breaking wave transformation system on a slope by an experiment and numerical analysis. In an experiment, the velocities in the surf zone were measured directly using an electromagnetic current meter, and the space distribution characteristic of the vorticity ω = (∂u/∂y − ∂u/∂x) and the skewness γ = (∂u/∂y + ∂u/∂x) were examined. Also, occurrence situations of the vortices at the time of water mass inrush were measured by video tape recorder (VTR) image processing. However, because the breaker is a violent phenomenon that is entrained with plentiful bubbles, the extent to which we can clarify breaker transformation in experiments is limited. Numerical simulations are substituted for experiments as a method to clarify breaker transformation.In numerical analysis, finite amplitude wave analysis based on the potential theory (non-viscous fluid) is possible before wave breaking; however, the analysis must take into account the viscous fluid after breaking. So, we use the Reynolds equations to develop a numerical simulation system of the breaker transformation on a sloping bottom. The numerical energy dissipation model of the breaker was compared to the experimental results, and a modified Simplified Marker and Cell (SMAC) method is presented. The internal characteristics of the breaker transformation are described using application examples.     

Organic geochemistry of the Japan Sea sediments-1: Bulk organic matter and hydrocarbon analyses of Core KH-79-3, C-3 from the Oki Ridge for paleoenvironment assessments

Organic geochemical study of bulk organic matter (OM), hopanoid hydrocarbon and normal hydrocarbon (C₂₃C₃₅) was conducted for a 936-cm-long sediment core sample from the Oki Ridge of the Japan Sea (Core KH-79-3, C-3; 37°03.5 N, 134°42.6E, water depth 935 m). Stable carbon isotopic ratios were also measured for both bulk OM and individual hydrocarbons. The following results were obtained: (1) The weight ratios of total organic carbon to total nitrogen range from 6.2 to 9.4 in the core. The ¹³C values of bulk OM range from –25.1–20.7%.. The ¹³C values of OM in the sections of 140190 cm are lower (–25–24) than those in the other sections (–23–21). This result indicates that OM in the core except for the 140190 cm sections is essentially of marine origin. (2) The ¹³C value of diploptene (a hopanoid hydrocarbon) in the last glacial maximum (LGM), is –66.3 (vs. PDB), which indicates it originating in methanotrophic bacteria. This result provides evidence to support for the previous ideas (Oba et al., 1980, 1984; Masuzawa and Kitano, 1984) that the bottom waters in the Japan Sea were anoxic in LGM. (3) Long chain (C₂₃C₃₅) n-alkanes of higher-plant wax origin were found throughout the core. Their concentration is high in 140190 cm in depth, suggesting that eolian dust load was high in LGM. (4) The n-alkane/TOC ratio increases with decreasing ¹³C values of bulk OM. This result indicates that the load of terrestrial (probably eolian dust-derived) OM to the Japan Sea became higher in colder climates. (5) The CPI values of long-chain n-alkanes are different in different ¹³O stages of paleoclimate, probably reflecting variations in species of terrestrial higher plants as a result of climatological adaptations.     

The inventory and chemical characterization of dissolved proteins in oceanic waters

One-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and high resolution two-dimensional electrophoresis (2-DE) were applied to separate protein molecules in dissolved organic matter (DOM) from oceanic waters. Results were: (1) The 2-DE distinguished a total of 412 protein spots in 10 samples from five water columns over the Pacific, although fewer than 30 proteins were resolved as bands from the identical samples by SDS-PAGE. (2) Major and ubiquitous protein bands (34 and 39 kDa proteins) on the SDS-PAGE gel were resolved into horizontally spread arrays (trains) of spots on the 2-DE gels, indicating that these bands were a mixture of protein species that have the same molecular weight (MW) but different isoelectric points (pIs). (3) Proteins that exhibited such electrophoretic patterns on the 2-DE gels were glycosylated with variable linkages between the sugar and polypeptide chains. (4) N-terminal amino-acid sequencing demonstrated that individual spots within each train of spots had identical N-terminal amino-acid sequences.The N-terminal amino-acid sequences of the 39 and 34 kDa glycoprotein spots in samples collected at different sites were also identical. Protein isoforms with the same amino-acid sequence but different glycosylation profiles, termed glycoforms, were often observed on the 2-DE gel. Thirty-one and 24 spots on the 2-DE gels were glycoforms of two glycoproteins with MWs of 39 and 34 kDa, respectively; they were one protein species. The glycoforms of the 39 kDa protein were identified as a low molecular weight alkaline phosphatase (L-AP) of Pseudomonas aeruginosa PAO1 by a homology search through five amino-acid sequence databases. The present and earlier work indicates that all identified source organisms of dissolved proteins belong to the Pseudomonas group. We propose the hypothesis that proteins associated with membrane vesicles liberated from a minor member of the bacterioplankton assemblage, the marine Pseudomonas group, are one of the important sources of dissolved proteins in oceanic waters. This hypothesis may apply to the source pathway and survival not only of proteins and also to the universally occurring bacterial peptidoglycan and lipopolysaccharide components in DOM.     

Mean circulation induced over bottom topography by mesoscale variabilities in the Kuroshio Extension

Circulation could be generated over bottom topography by vertical shrinking or stretching of a water parcel, in which potential vorticity is conserved. The water parcel moves up or down over the bottom topography yielding shrinking or stretching. In addition to a prevailing current which advects the water parcel in one direction, an oscillatory motion can also induce shrinking and stretching, and circulation is consequently generated over the bottom topography, once it is averaged in time. A two-layer quasi-geostrophic model has been used to reproduce mesoscale variabilities both in and under the Kuroshio Extension around the Shatsky Rise. A combination of TOPEX and ERS altimeters provided information on an eddy field near the sea surface, while a data assimilation method was used to reconstruct the flow field below the main thermocline. Among various mesoscale processes associated with the Kuroshio, it is remarkable that topographic Rossby waves trapped over the Shatsky Rise are generated by the upper-layer mesoscale variability. A persistent anticyclonic circulation is produced on the Shatsky Rise through a water parcel moving up and down over the bottom slope, and is consistent with the observed density anomaly in the WOA94.     

Radium isotopes in coastal and open ocean surface waters of the Western North Pacific

Using manganese-impregnated fiber extraction and high-efficiency gamma counting techniques, we measured the distribution of ²²⁸Ra and ²²⁶Ra in surface waters near the coast of Japan and in the western North Pacific. There is no evidence in our data that any significant amount of ²²⁸Ra is added to open ocean surface waters from the coastal waters around Tokyo Bay. High ²²⁸Ra concentrations (> 10 dpm/10³ kg), were observed along the Kuroshio Current as compared to < 2.5 dpm/10³ kg between 10° and 30°N of the central gyre, and hence the major source of ²²⁸Ra in the surface water is likely to be the East Asian continental shelf zones. A simple one-dimensional eddy diffusion and advection model is used to explain the observed decrease of ²²⁸Ra from coast to the open ocean. The model results indicate two mixing regimes across the Kuroshio Current System with apparent eddy diffusion coefficients of K_y = 4 × 10⁵ cm² s⁻¹ at distance y < 200 km from the coast, and K_y = 4 × 10⁷ cm² s⁻¹ at y > 200 km. Along 40°N where an eastward flow of the ‘Kuroshio Extension’ prevails, an advective flow of > 0.1 knot is consistent with the observation of nearly constant ²²⁸Ra along the track.The geographical distribution pattern of ²²⁸Ra is clearly different from that of atmospherically derived ²¹⁰Pb. Thus the ²²⁸Ra in surface water serves as a useful tracer that accompanies fluvially and coastally derived elements during their subsequent lateral transport toward the central gyre.