Microbial photosynthesis in coral reef sediments (Heron Reef, Australia)

We investigated microphytobenthic photosynthesis at four stations in the coral reef sediments at Heron Reef, Australia. The microphytobenthos was dominated by diatoms, dinoflagellates and cyanobacteria, as indicated by biomarker pigment analysis. Conspicuous algae firmly attached to the sand grains (ca. 100 μm in diameter, surrounded by a hard transparent wall) were rich in peridinin, a marker pigment for dinoflagellates, but also showed a high diversity based on cyanobacterial 16S rDNA gene sequence analysis. Specimens of these algae that were buried below the photic zone exhibited an unexpected stimulation of respiration by light, resulting in an increase of local oxygen concentrations upon darkening. Net photosynthesis of the sediments varied between 1.9 and 8.5 mmol O₂ m⁻² h⁻¹ and was strongly correlated with Chl a content, which lay between 31 and 84 mg m⁻². An estimate based on our spatially limited dataset indicates that the microphytobenthic production for the entire reef is in the order of magnitude of the production estimated for corals. Photosynthesis stimulated calcification at all investigated sites (0.2–1.0 mmol Ca²⁺ m⁻² h⁻¹). The sediments of at least three stations were net calcifying. Sedimentary N₂-fixation rates (measured by acetylene reduction assays at two sites) ranged between 0.9 to 3.9 mmol N₂ m⁻² h⁻¹ and were highest in the light, indicating the importance of heterocystous cyanobacteria. In coral fingers no N₂-fixation was measurable, which stresses the importance of the sediment compartment for reef nitrogen cycling.     

Sludge weathering and mobility of contaminants in soil affected by the Aznalcollar tailing dam spill (SW Spain)

As a result of the collapse of the Aznalcollar mine tailings dam, a large extension of the Guadiamar valley in SW Spain was covered with a layer of pyrite sludge. Although most of the sludge was removed, a small amount remains in the soil, constituting a potential source of water pollution. A column experiment was carried out in order to determine the rate of sludge oxidation in the soil, and the existence of metal retention processes. The column was filled with a mixture of sludge and a sandy soil common in the region. At different time intervals, the column was leached with water and the resulting solution analysed.

The pH of the water dropped to values around 2 after 260 days and then remained constant due to the buffering role of silicate dissolution. The concentration of Zn, Cd and Co in the leachates matched the expected values from flow-through experiments at atmospheric oxygen pressure. This indicates that oxygen diffusion in the pores was complete. Moreover, no efficient processes existed for retaining Zn, Cd and Co, which formed soluble salts and were entirely incorporated into the infiltrating water. During the first 2 months of the experiment, when pH was higher than 4.5, the concentrations of Fe and Al were very low. Saturation indices showed that the solution was in equilibrium with amorphous Fe(OH)₃ and Al(OH)₃. Subsequently, at lower pH values, jarosite [(Na,K)Fe₃(SO₄)₂(OH)₆] formed. This solid phase was identified by X-ray diffraction (XRD) and Scanning Electron Microscopy (SEM). Jarosite was also responsible for the depletion of As, Pb, Sb and probably Tl in the water resulting from infiltration.     

The macroinfauna of the Galician sandy beaches (NW Spain) affected by the Prestige oil-spill

Eighteen sandy beaches were sampled along the 1659 km of the Galician coast (NW Spain) six months after the Prestige oil-spill to study the impact of the fuel and the clean-up activities on the macroinfauna community. A transect was extended at each beach, from above the drift line to below the swash line at five sampled levels; at each level six 0.05 m2 replicates were taken to a depth of 30 cm and sieved through a 1mm mesh, and the organisms collected and preserved. Results were compared with previous data obtained using the same procedures. The macroinfauna was numerically dominated by the amphipod Pontocrates arenarius, the isopod genus Eurydice, the polychaete Scolelepis squamata, and the amphipod Talitrus saltator. As a result of the Prestige oil-spill and the clean-up activities, beach populations were reduced, with Eurydice and S. squamata as the most affected taxa.     

Enhancing Microbial Sulfate Reduction of Hydrocarbons in Groundwater Using Permeable Filled Borings

At a service station closed in 1993, groundwater contained benzene that persisted above the cleanup goal of 1 mg/L in zones depleted of background sulfate. The benzene and other petroleum hydrocarbons (PHCs) were present as much as 36 feet (11 m) below the water table and therefore remediation of a thick saturated zone interval was required. Microcosms using site sediments demonstrated that anaerobic benzene biodegradation occurred only if sulfate was added, suggesting sulfate addition as a remediation approach. Twenty-four boreholes (9.1″ diameter and 56′ deep) were drilled around four monitoring wells, in which benzene concentrations exceeded 1 mg/L. The boreholes were backfilled with a mixture of gravel and 15,000 pounds of gypsum (which releases sulfate as it dissolves) to create “Permeable Filled Borings” (PFBs). Concurrently, nine high pressure injections (HPIs) of gypsum slurry were conducted in other site locations (312 pounds of gypsum total). PFBs were expected to release sulfate for up to 20 years, whereas HPIs were expected to produce a short-lived plume of sulfate. Concentrations of benzene and sulfate in groundwater were monitored over a 3-year period in six monitoring wells. In two wells near PFBs, benzene concentrations dropped below the cleanup goal by two to three orders of magnitude; in one well, sulfate concentrations exceeded 500 mg/L for the most recent 18 months. Benzene concentrations in two other PFB monitoring wells declined by a factor of 2 to 4, but remained above 1 mg/L, presumably due to high-dissolved PHC concentrations and possibly greater residual PHC mass in adjacent sediments, and therefore greater sulfate demand. However, hydrogen and sulfur isotopic enrichment in benzene and sulfate, respectively, confirmed biodegradation of benzene and stimulation of sulfate-reducing conditions. Thus, it is hypothesized that the PHC mass in adjacent sediments will decline over time, as will dissolved PHC concentrations, and eventually benzene concentrations will decrease below the cleanup goal. Benzene in two HPI monitoring wells was below the cleanup goal for all but one sampling event before HPIs were conducted and remained below the cleanup goal after HPIs; there was no stimulation of sulfate-reducing conditions. It is concluded that sulfate released from PFBs contributed to declining benzene concentrations.     

Stability of Mg-Ca carbonates

In this article a diagram is constructed in which the stability of Mg-Ca-carbonates can be represented as a function of only two parameters. By means of this diagram the relative stability of the various carbonates can be easily compared.     

Volcano-tectonic controls and emplacement kinematics of the Iriga debris avalanches (Philippines)

Mt Iriga in southeastern Luzon is known for its spectacular collapse scar that was possibly created in 1628 ad by a 1.5-km³ debris avalanche. The debris avalanche deposit (DAD) covered 70?km² and dammed the Barit River to form Lake Buhi. The collapse has been ascribed to a non-volcanic trigger related to a major strike-slip fault under the volcano. Using a combination of fieldwork and remote sensing, we have identified a similar size, older DAD to the southwest of the edifice that originated from a sector oblique to the underlying strike-slip fault. Both deposits cover wide areas of low, waterlogged plains, to a distance of about 16?km for the oldest and 12?km for the youngest. Hundreds of metre-wide and up to 50-m-high hummocks of intact conglomerate, sand and clay units derived from the base of the volcano show that the initial failure planes cut deep into the substrata. In addition, large proportions of both DAD consist of ring-plain sediments that were incorporated by soft-sediment bulking and extensive bulldozing. An ignimbrite unit incorporated into the younger DAD forms small (less than 5?m high) discrete hummocks between the larger ones. Both debris avalanches slid over water-saturated soft sediment or ignimbrite and spread out on a basal shear zone, accommodated by horst and graben formation and strike-slip faults in the main mass. The faults are listric and flatten into a well-developed basal shear zone. This shear zone contains components from the substrate and has a diffuse contact with the intact substrata. Long, transport-normal ridges in the distal parts are evidence of compression related to deceleration and bulldozing. The collapse orientation and structure on both sectors and DAD constituents are consistent with collapse being a response to combined transtensional faulting and gravity spreading. Iriga can serve as a model for other volcanoes, such as Mayon, that stand in sedimentary basins undergoing transtensional strike-slip faulting.     

Age and tectonostratigraphic significance of the Upper Carboniferous series in the basement of the Andean Frontal Cordillera: Geodynamic implications

The age and tectonosedimentary environment of the Palaeozoic sediments on the Frontal Cordillera is not well known and earlier studies have been unable to satisfactorily explain the geological history of the basement of the Andes.In the vicinity of the old Castaño Viejo mine crop out various levels of partially metamorphosed microbialite limestones, which alternate with thin marly–lutitic interstrata. These levels contain abundant palynomorph remains, which allow the series to be dated as Silurian–Devonian. These data, together with the presence of warm climate fossils, lend support to the hypothesis of a major allochtony of the Chilenia Terrane (of which the Frontal Cordillera formed part), relative to the Cuyania Terrane (which included the Precordillera), prior to their amalgamation.Upper Carboniferous palynomorphs found during this study occur in association with resedimented palynomorphs and chitinozoa, of possible Devonian age. This demonstrates the equivalence of both fossiliferous series and their location within the upper part of the Upper Carboniferous Agua Negra Fm. The Silurian–Devonian elements, deformed during a phase prior to the Gondwanic orogeny, were eroded and transported to the foreland basin during the Upper Carboniferous.The palynomorph associations found in all samples correspond to the Ancistrospora palynological zone and to the Raistrickia densa–Convolutispora muriornata Biozone, which are indicative of Upper Carboniferous times. Characteristic forms such as Ancistrospora verrucosa and C. muriornata, both indicative of an Upper Carboniferous age, were found in samples from the Castaño Viejo area.Earlier interpretations of the Frontal Cordillera attributing the sedimentation to a palaeo-latitude at some distance from Gondwana, were based on the presence of Silurian–Devonian hot water stromatolithic limestones. Our results suggest that Cuyania and Chilenia were not necessarily separated by a great distance before their amalgamation. This in turn means that a large ocean was not necessarily consumed in the process.     

The Bayesian detection of discontinuities in a polynomial regression and its application to the cycle-slip problem

This paper deals with the problem of detecting and correcting cycle-slips in Global Navigation Satellite System (GNSS) phase data by exploiting the Bayesian theory. The method is here applied to undifferenced observations, because repairing cycle-slips already at this stage could be a useful pre-processing tool, especially for a network of permanent GNSS stations. If a dual frequency receiver is available, the cycle-slips can be easily detected by combining two phase observations or phase and range observations from a single satellite to a single receiver. These combinations, expressed in a distance unit form, are completely free from the geometry and depend only on the ionospheric effect, on the electronic biases and on the initial integer ambiguities; since these terms are expected to be smooth in time, at least in a short period, a cycle-slip in one or both the two carriers can be modelled as a discontinuity in a polynomial regression. The proposed method consists in applying the Bayesian theory to compute the marginal posterior distribution of the discontinuity epoch and to detect it as a maximum a posteriori (MAP) in a very accurate way. Concerning the cycle-slip correction, a couple of simultaneous integer slips in the two carriers is chosen by maximazing the conditional posterior distribution of the discontinuity amplitude given the detected epoch. Numerical experiments on simulated and real data show that the discontinuities with an amplitude 2 or 3 times larger than the noise standard deviation are successfully identified. This means that the Bayesian approach is able to detect and correct cycle-slips using undifferenced GNSS observations even if the slip occurs by one cycle. A comparison with the scientific software BERNESE 5.0 confirms the good performance of the proposed method, especially when data sampled at high frequency (e.g. every 1 s or every 5 s) are available.     

Structural evolution of the Orange Basin gravity-driven system,offshore Namibia

The Orange Basin records the development of the Late Jurassic to present day volcanic-rifted passive margin of Namibia. Regional extension is recorded by a Late Jurassic to Lower Cretaceous Syn-rift Megasequence, which is separated from a Cretaceous to present day post-rift Megasequence by the Late Hauterivian (ca. 130 Ma) break-up unconformity. The Late Cretaceous Post-rift evolution of the basin is characterized by episodic gravitational collapse of the margin. Gravitational collapse is recorded as a series of shale-detached gravity slide systems, consisting of an up-dip extensional domain that is linked to a down-dip zone of contraction domain along a thin basal detachment of Turonian age. The extensional domain is characterized by basinward-dipping listric faults that sole into the basal detachment. The contractional domain consists of landward-dipping listric faults and strongly asymmetric basinward-verging thrust-related folds. Growth stratal patterns suggest that the gravitational collapse of the margin was short-lived, spanning from the Coniacian (ca. 90 Ma) to the Santonian (ca. 83 Ma). Structural restorations of the main gravity-driven system show a lack of balance between up-dip extension (24 km) and down-dip shortening (16 km). Gravity sliding in the Namibian margin is interpreted to have occurred as a series of episodic short-lived gravity sliding between the Cenomanian (ca. 100 Ma) and the Campanian (ca. 80 Ma). Gravity sliding and spreading are interpreted to be the result of episodic cratonic uplift combined with differential thermal subsidence. Sliding may have also been favoured by the presence of an efficient detachment layer in Turonian source rocks.     

Assessing sedimentation in a temperate dystrophic lake in the NE Atlantic seaboard region

Organic materials deposited in lacustrine environments can be derived from both aquatic and terrestrial ecosystems, and can serve as valuable indicators of catchment and in-lake ecological changes over time. However, spatial and temporal variation in the deposition of these materials within a lake basin will influence the interpretation of these sediment deposits. In this study, materials deposited in suspended sediment traps and basin sediments in Lough Feeagh, a temperate coastal humic lake, show variations in organic matter, total organic carbon and nitrogen loads, algal pigment concentrations and diatom assemblages. Sediment trap samples from three locations along with adjacent surface sediment cores show a clear north–south (inlet to outlet) gradient. C/N ratios reflected a mixture of algal and land-derived organic matter with a major peat influence, and comparisons between sediment trap and surface sediment assemblages revealed pigment and diatom assemblages influenced by lake-basin position and water depth. While some coherency between trap and sediment samples was apparent a more complicated biological response is demonstrated along with reduced water clarity in recent years thus highlighting the implications of increased allochthonous imputs for biological and biogeochemical processes in oligo-humic aquatic systems.