Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China

The chloroplast and mitochondrion of red algae （Phylum Rhodophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lin-eages by using red algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Rhodophyta. We have found that red algae were divided into three clades of orders, Florideophyceae, Bangiophyceae and Cyanidiophyceae. Taxonomy resolution for Class Florideophyceae showed that Order Gigartinales was close to Order Halymeniales, while Order Graci-lariales was in a clade of Order Ceramials. We confirmed Prionitis divaricata （Family Halymeniaceae） was closely related to the clade of Order Gracilariales, rather than to genus Grateloupia of Order Halymeniales as reported before. Furthermore, we found both mitochondrial and chloroplastic genes in Rhodophyta under negative selection （Ka/Ks〈1）, suggesting that red algae, as one primitive group of eukaryotic algae, might share joint evolutionary history with these two organelles for a long time, although we identified some dif-ferences in their phylogenetic trees. Our analysis provided the basic phylogenetic relationships of red algae, and demonstrated their potential ability to study endosymbiotic events.     

褐藻纲海带目Laminaria属和Saccharina属基于三个分子标记的系统发育分析

In the past two decades, many studies have focused on the classification within genus Laminaria, ultimately trying to divide it into two subgroups or genera: Laminaria and Saccharina. A significant debate still surrounds the question of its division, as the conflicting phylogenetic hypotheses that have resulted from the classification studies are based on different taxon sampling, molecular markers, or analysis methods. It is aimed at elucidate the molecular phylogeny within Laminaria and Saccharina. The nine species of Laminariales are sampled from northern Asia and Europe, and 23 new sequences in the nuclear, plastid, and mitochondrial genomes are determined to identify their taxonomic status. The phylogenetic analyses of 71 species are performed, including representatives from six of the seven families of the order Laminariales, based on three separate data sets. An evidence is provided to strongly support a clear split that maintains the two recognized genera, Laminaria and Saccharina, with Laminaria appearing to be the ancestor group. Further, analyses indicate that all taxa in Saccharina and Laminaria did not form a monophyletic lineage, instead Laminariaceae and Lessoniaceae grouped together interlacedly, and Costariaceae appeared as the sister taxon of the Lessoniaceae–Laminariaceae clade. In the phylogenetic analysis, mitochondrial c oxidase I(COI) sequences appeared to be the most credible molecular marker which was more befitting than nuclear encoded internal transcribed spacer(ITS) and plastid encoded rbcL for establishment of Laminariales systematics. It is the most comprehensive phylogeny of the order Laminariales, and contributes to an enhanced understanding and estimation of the phylogenetic relationships for the economically important seaweeds, Laminaria and Saccharina.     

南大西洋沉积物中多环芳香化合物的组成特征研究

10 samples of sediments obtained from the South Mid-Atlantic Ridge were measured for the abundances and distributions of polycyclic aromatic compounds(PAHs). The total concentrations of PAHs(∑PAHs) ranged from 2.768 to 9.826 μg/g dry sediment. The ∑PAHs was higher in sample 22V-TVG10 and sample 26V-TVG05 which were close to hydrothermal fields, with the lowest value in sample 22V-TVG14 which was farthest from hydrothermal fields, suggesting a probable hydrothermal origin of ∑PAHs of samples. Approximately nine kinds of PAHs were identified, and low molecular mass tricyclic and tetracyclic aromatic compounds were predominant in the samples. The concentrations of fluoranthene which were typical as hydrothermal alteration compounds were the highest among PAHs with dry weight between 0.913–3.157 μg/g. The phenanthrene homologue was most abundant in the samples, and the ratios between parent phenanthrene and methylphenanthrene which probably reflected the degree of hydrothermal alteration ranged from 0.097 to 1.602. The sample 22V-TVG10 possessing a maximum ratio value showed the intense influence of the hydrothermal alteration on this sample, which might further imply that PAHs in sediments were mainly derived from the hydrothermal alteration.     

沉积物孔隙毛细管压力与甲烷水合物饱和度关系研究

To better understand the relationship between the pore capillary pressure and hydrate saturation in sediments, a new method was proposed. First, the phase equilibria of methane hydrate in fine-grained silica sands were measured. As to the equilibrium data, the pore capillary pressure and saturation of methane hydrate were calculated. The results showed that the phase equilibria of methane hydrates in fine-grained silica sands changed due to the depressed activity of pore water caused by the surface group and negatively charged characteristic of silica particles as well as the capillary pressure in small pores together. The capillary pressure increased with the increase of methane hydrate saturation due to the decrease of the available pore space. However, the capillary-saturation relationship could not yet be described quantitatively because of the stochastic habit of hydrate growth.     

海冰对北极海冰边缘区大洋光学观测的影响评估

Diffuse attenuation coefficient(DAC) of sea water is an important parameter in ocean thermodynamics and biology, reflecting the absorption capability of sea water in different layers. In the Arctic Ocean, however, sea ice affects the radiance/irradiance measurements of upper ocean, which results in obvious errors in the DAC calculation. To better understand the impacts of sea ice on the ocean optics observations, a series of in situ experiments were carried out in the summer of 2009 in the southern Beaufort Sea. Observational results show that the profiles of spectral diffuse attenuation coefficients of seawater near ice cover within upper surface of 50 m were not contaminated by the sea ice with a solar zenith angle of 55°, relative azimuth angle of 110°≤φ≤115° and horizontal distance between the sensors and ice edge of greater than 25 m. Based on geometric optics theory, the impact of ice cover could be avoided by adjusting the relative solar azimuth angle in a particular distance between the instrument and ice. Under an overcast sky, ice cover being 25 m away from sensors did not affect the profiles of spectral DACs within the upper 50 m either. Moreover, reliable spectral DACs of seawater could be obtained with sensors completely covered by sea ice.     

Tensile stiffness analysis on ocean dynamic power umbilical

Tensile stiffness of ocean dynamic power umbilical is an important design parameter for functional implementation and structural safety. A column with radial stiffness which is wound by helical steel wires is constructed to predict the tensile stiffness value of umbilicals in the paper. The relationship between the tension and axial deformation is expressed analytically so the radial contraction of the column is achieved in the relationship by use of a simple finite element method. With an agreement between the theoretical prediction and the tension test results, the method is proved to be simple and efficient for the estimation of tensile stiffness of the ocean dynamic power umbilical.     

中国贝类养殖对海洋碳循环的贡献评估

造成全球暖化的主要原因是温室气体的过量排放,其中CO2的贡献率达60 %,贝类养殖具有碳沉积作用。依据农业部渔业局编制的《中国渔业统计年签》,以2001年到2010年的年平均产量计算贝类捕获和养殖的碳沉积能力,并评估其碳沉积潜力;计算牡蛎、蛤、扇贝与贻贝四种贝壳单位面积的碳沉积能力并与森林、珊瑚礁的碳沉积能力进行比较分析。本文对我国浅海贝类养殖所具有的碳沉积能力进行评估,以了解贝类养殖对海洋碳循环的贡献,可为争取国家碳份额的合法权益提供基础数据。分析表明我国近十年贝类总产量稳定在1100万吨以上,并有增加的趋势,其中海水养殖贝类约占87.34 %。贝类养殖和捕获总产量的碳沉积和海水养殖产量的碳沉积量分别为58.57、51.15万吨/年,碳沉积能力分别相当于122.28、106.78万公顷的造林,可分别减少大气CO2增加量的0.0125 %、0.0109 %。牡蛎、蛤、扇贝与贻贝的单位面积碳沉积速率分别为1.573、0.388、0.301、1.039吨碳/(公顷?年);牡蛎和贻贝高于森林的碳沉积能力0.479吨碳/(公顷?年);但低于珊瑚礁的碳沉积能力1.8吨碳/(公顷?年)。我国贝类淡、海水养殖产量可分别创造约268.4万元/年、12,711.2万元/年的碳权商机。     

短期风化对混合溢油组成的影响

对两种原油进行混合配比实验,将混合后油样置于人工气候箱进行风化模拟实验,采用气相色谱质谱联用仪(GC-MS)检测风化样品中的生物标志化合物,短期风化作用对混合溢油的油指纹、生物标志化合物诊断指标等的影响。结果表明,混合溢油的正构烷烃总质量变化与单一原油油品的变化规律相近,即前期风化较快,质量减损较多,而后期风化趋缓,不同混合比例的溢油表现差异不明显。常用于短期风化的诊断比值对各混合油样的风化具有指示意义,但难以定性鉴别油品是否发生混合。重复性限法检验只能判定短期风化过程前后的油样为同一油源,而难以反映油样是否为混合油源的特征,各诊断比值的RSD%值较大可能是混合溢油的一个表现。