Pilocarpus microphyllus seedling growth threatened by climate change: an ecophysiological approach

Theoretical and Applied Climatology - The climate change endangers many species of the Amazon Forest. An example, in the endangered medicinal species Pilocarpus microphyllus (popularly known as...     

Dynamics of intrathermocline vortices in a gyre flow over a seamount chain

The interaction of meddies with a complex distribution of seamounts is studied in a three-layer quasi-geostrophic model on the f-plane. This study aims at understanding if and how this seamount chain can represent a barrier to the propagation of these eddies and how it can be involved in their decay. The eddies are idealized as vortex patches in the middle layer, interacting with a regional cyclonic current and with ten idealized seamounts. The numerical code is based on the contour surgery technique. The initial position, radius, shape, number and polarity of the eddies are varied. The main results are the following: (1) Though they do not describe the unsteady flow, the streamlines of the regional and topographic flow provide a useful estimate of the vortex trajectories, in particular towards the major seamounts, where stronger velocity shears are expected. (2) The tallest and widest seamounts which have the largest vorticity reservoir are able to considerably erode the vortices, but also to draw anticyclones towards the seamount top. The ability of narrower seamounts to erode vortices is related to their multiplicity. (3) Only 1/3 of the anticyclones with about 30-km radius reach the southern boundary of the seamount chain, and their erosion is larger than 50 %. The other anticyclones are either completely eroded or trapped over a wide seamount top. Cyclones are less affected by seamounts because they oppose the topographic draft towards the seamount top and they drift along the side of the seamount. (4) Large vortices resist topographic erosion more efficiently. The rate of erosion grows from a few percent to about 35–50 % as the vortex radius decreases from about 60 to 30 km. Small cyclones are not eroded, contrary to small anticyclones (which completely decay), in relation with the different trajectories of these eddies in the vicinity of the seamounts. (5) The detailed vortex shape does not appear critical for their evolution, if they are close enough to the seamount chain initially. The interaction between a group of vortices initially north of the seamount chain can modify their trajectory to such an extent that they finally avoid collision with seamounts. (6) Finally, meddy trajectories across the Horseshoe Seamounts (data from the AMUSE experiment) show qualitative similarity with the vortex paths in the model. Several events of vortex decay also occur at comparable locations (in particular over the wide and tall seamounts) in the model and observations.     

A model for conductive faults with non-matching grids

In this paper, we are interested in modeling single-phase flow in a porous medium with known faults seen as interfaces. We mainly focus on how to handle non-matching grids problems arising from rock displacement along the fault. We describe a model that can be extended to multi-phase flow where faults are treated as interfaces. The model is validated in an academic framework and is then extended to 3D non K-orthogonal grids, and a realistic case is presented.     

Effects of soil-engineering properties on the failure mode of shallow landslides

Some landslides mobilize into flows, while others slide and deposit material immediately down slope. An index based on initial dry density and fine-grained content of soil predicted failure mode of 96 landslide initiation sites in Oregon and Colorado with 79% accuracy. These material properties can be used to identify potential sources for debris flows and for slides. Field data suggest that loose soils can evolve from dense soils that dilate upon shearing. The method presented herein to predict failure mode is most applicable for shallow (depth <5?m), well-graded soils (coefficient of uniformity >8), with few to moderate fines (fine-grained content <18%), and with liquid limits <40.     

Fate characteristics of nitrogen in runoff from a small agricultural watershed on the south of Huaihe River in China

Qualitative and quantitative evolution of the Swarna estuary, during the past 38 years (1967–2005), has been analysed by integrating the results of field surveys, satellite images, hydrodynamic modelling and topographic data in GIS context. Significant changes in erosion/accretion patterns of the estuarine banks, inlet configuration and adjacent spits, and origin, morphology, orientation and areal extent of fifteen braided islands have been estimated. Hydrodynamics of the region is studied through modelling, and probable flow pattern that is responsible for morphological changes is discussed. The simulated flow patterns indicate that current speeds are of the order of 10–20 cm/s inside the estuary and of the order of 40 cm/s at the mouth. The Right bank (Rb) of the estuary is subject to net erosion and the Left bank (Lb) is subject to net accretion. On an average, 20–30% of the area of all braided islands would be flooded, if the water level rises by 0.7 to 1.0 m. Islands of this estuary are morphologically very dynamic (migrating towards north, northeast and southwest directions) and subject to net accretion, whereas only one island (i.e., the Padu) has lost its major portion of landmass. A conceptual inverse distance weighted (IDW) interpolation model has been generated and evaluated possible flooding on the estuarine shoals and braided islands, due to heavy rainfall and/or sea-level rise. The model reveals that the possibility of flooding will be higher for those islands which are located close to the Rb than those close to the Lb.     

Silver and lead in high-altitude lake sediments: Proxies for climate changes and human activities

High-altitude lake sediments are often used as archives for environmental changes and their chemical and isotopic compositions provide significant constraints on natural and anthropogenic long-term changes that have occurred in their catchment area. Here, trace-element concentrations and Pb isotopes are presented for two sedimentary cores from Lake Blanc Huez in the French Alps, to trace the impact of climate changes and human activities over the Holocene. Lead and Ag contents are very high and clearly dominated by input from a Pb–Ag vein located a few meters from the lakeshore, a vein that also buffers the Pb isotopes. Mining of this vein in medieval times is recorded in the corresponding lake sediments with high Ag content coupled with high Pb/U ratio. These chemical characteristics can be used to constrain the major Holocene climate changes. Significant advances of glaciers next to the lake produced sediments with Ag and Pb concentration peaks and high Pb/U ratios due to accelerated erosion of the Pb–Ag vein, similar to the effects of the medieval mining. In contrast, reduced glacier activity led to the formation of organic-rich sediments with high U and As contents and low Pb/U ratios. More generally, the observed combination of chemical changes could be used elsewhere to decipher environmental changes over long periods of time.     

The impact of African aridity on the isotopic signature of Atlantic deep waters across the Middle Pleistocene Transition

A high resolution analysis of benthic foraminifera as well as of aeolian terrigenous proxies extracted from a 37 m-long marine core located off the Mauritanian margin spanning the last ~ 1.2 Ma, documents the possible link between major continental environmental changes with a shift in the isotopic signature of deep waters around 1.0–0.9 Ma, within the so-called Mid-Pleistocene Transition (MPT) time period. The increase in the oxygen isotopic composition of deep waters, as seen through the benthic foraminifera δ¹⁸O values, is consistent with the growth of larger ice sheets known to have occurred during this transition. Deep-water mass δ¹³C changes, also estimated from benthic foraminifera, show a strong depletion for the same time interval. This drastic change in δ¹³C values is concomitant with a worldwide 0.3‰ decrease observed in the major deep oceanic waters for the MPT time period. The phase relationship between aeolian terrigeneous signal increase and this δ¹³C decrease in our record, as well as in other paleorecords, supports the hypothesis of a global aridification amongst others processes to explain the deep-water masses isotopic signature changes during the MPT. In any case, the isotopic shifts imply major changes in the end-member δ¹⁸O and δ¹³C values of deep waters.     

Institutional designs of customary fisheries management arrangements in Indonesia, Papua New Guinea, and Mexico

There are considerable efforts by governments, non-governmental organizations (NGOs), and academia to integrate marine conservation initiatives and customary practices, such as taboos that limit resource use. However, these efforts are often pursued without a fundamental understanding of customary institutions. This paper examines the operational rules in use and the presence of institutional design principles in long-enduring and dynamic customary fisheries management institutions in Papua New Guinea, Indonesia, and Mexico. Rather than a “blue print” for devising long-enduring institutions, this study relies on the design principles as a starting point to organize an inquiry into the institutional diversity found in customary governance regimes. Three important trends emerged from this comparative analysis: (1) despite it being notoriously difficult to define boundaries around marine resources, almost 3/4 of the cases in this study had clearly defined boundaries and membership; (2) all of the customary institutions were able to make and change rules, indicating a critical degree of flexibility and autonomy that may be necessary for adaptive management; (3) the customary institutions examined generally lacked key interactions with organizations operating at larger scales, suggesting that they may lack the institutional embeddedness required to confront some common pool resources (CPR) challenges from the broader socioeconomic, institutional and political settings in which they are embedded. Future research will be necessary to better understand how specific institutional designs are related to social and ecological outcomes in commons property institutions.     

Seasonal variability of cohesive sediment aggregation in the Bach Dang–Cam Estuary, Haiphong (Vietnam)

In the Bach Dang–Cam Estuary, northern Vietnam, mechanisms governing cohesive sediment aggregation were investigated in situ in 2008–2009. As part of the Red River delta, this estuary exhibits a marked contrast in hydrological conditions between the monsoon and dry seasons. The impact on flocculation processes was assessed by means of surveys of water discharge, suspended particulate matter concentration and floc size distributions (FSDs) conducted during a tidal cycle at three selected sites along the estuary. A method was developed for calculating the relative volume concentration for the modes of various size classes from FSDs provided by the LISST 100X (Sequoia Scientific Inc.). It was found that all FSDs comprised four modes identified as particles/flocculi, fine and coarse microflocs, and macroflocs. Under the influence of the instantaneous turbulent kinetic energy, their proportions varied but without significant modification of their median diameters. In particular, when the turbulence level corresponded to a Kolmogorov microscale of less than ∼235 μm, a major breakup of flocs resulted in the formation of particles/flocculi and fine microflocs. Fluctuations in turbulence level were governed by seasonal variations in freshwater discharge and by the tidal cycle. During the wet season, strong freshwater input induced a high turbulent energy level that tended to generate sediment transfer from the coarser size classes (macroflocs, coarse microflocs) to finer ones (particles/flocculi and fine microflocs), and to promote a transport of sediment seawards. During the dry season, the influence of tides predominated. The turbulent energy level was then only episodically sufficiently high to generate transfer of sediment between floc size classes. At low turbulent energy, modifications in the proportions of floc size classes were due to differential settling. Tidal pumping produced a net upstream transport of sediment. Associated with the settling of sediment trapped in a near-bed layer at low turbulent energy, this causes the silting up of the waterways leading to the harbour of Haiphong.     

Application of a mixing-ratios based formulation to model mixing-driven dissolution experiments

We address the question of how one can combine theoretical and numerical modeling approaches with limited measurements from laboratory flow cell experiments to realistically quantify salient features of complex mixing-driven multicomponent reactive transport problems in porous media. Flow cells are commonly used to examine processes affecting reactive transport through porous media, under controlled conditions. An advantage of flow cells is their suitability for relatively fast and reliable experiments, although measuring spatial distributions of a state variable within the cell is often difficult. In general, fluid is sampled only at the flow cell outlet, and concentration measurements are usually interpreted in terms of integrated reaction rates. In reactive transport problems, however, the spatial distribution of the reaction rates within the cell might be more important than the bulk integrated value. Recent advances in theoretical and numerical modeling of complex reactive transport problems [De Simoni M, Carrera J, Sanchez-Vila X, Guadagnini A. A procedure for the solution of multicomponent reactive transport problems. Water Resour Res 2005;41:W11410. doi: 10.1029/2005WR004056, De Simoni M, Sanchez-Vila X, Carrera J, Saaltink MW. A mixing ratios-based formulation for multicomponent reactive transport. Water Resour Res 2007;43:W07419. doi: 10.1029/2006WR005256] result in a methodology conducive to a simple exact expression for the space–time distribution of reaction rates in the presence of homogeneous or heterogeneous reactions in chemical equilibrium. The key points of the methodology are that a general reactive transport problem, involving a relatively high number of chemical species, can be formulated in terms of a set of decoupled partial differential equations, and the amount of reactants evolving into products depends on the rate at which solutions mix. The main objective of the current study is to show how this methodology can be used in conjunction with laboratory experiments to properly describe the key processes that occur in a complex, geochemically-active system under chemical equilibrium conditions. We model three CaCO₃ dissolution experiments reported in Singurindy et al. [Singurindy O, Berkowitz B, Lowell RP. Carbonate dissolution and precipitation in coastal environments: Laboratory analysis and theoretical consideration. Water Resour Res 2004;40:W04401. doi: 10.1029/2003WR002651, Singurindy O, Berkowitz B, Lowell RP. Correction to Carbonate dissolution and precipitation in coastal environments: laboratory analysis and theoretical consideration. Water Resour Res 2005;41:W11701. doi: 10.1029/2005WR004433], in which saltwater and freshwater were mixed in different proportions. The integrated reaction rate within the cell estimated from the experiments are modeled independently by means of (a) a state-of-the-art reactive transport code, and (b) the uncoupled methodology of [12, 13], both of which use dispersivity as a single, adjustable parameter. The good agreement between the results from both methodologies demonstrates the feasibility of using simple solutions to design and analyze laboratory experiments involving complex geochemical problems.