Montagne Pelée volcano (Martinique,in the French Lesser Antilles) hydrogeological system revealed by high-resolution helicopter-borne electromagnetic imagery

Montagne Pelée, on the French island of Martinique, eastern Caribbean Sea, has been one of the deadliest volcanoes in the world, with 30,000 victims following the 1902 eruption. Thousands of people still live nearby, and this volcano is a strategic “water tank” for Martinique Island, providing 40% of the island’s water supply. This research aimed to better understand its hydrogeological functioning and the relationship with its complex volcanological evolution, taking advantage of a high-resolution helicopter-borne geophysical survey correlated with hydrogeological data from the boreholes and springs databases. Electromagnetic data, correlated with hydrogeological data, allowed for the identification of unsaturated zones, aquifers, and seawater intrusions, as well as the main geological units. In addition, data synthesised from pumping tests revealed that the older the unconsolidated pyroclastic deposits, the lower their hydraulic conductivity. The structural asymmetry between the northeastern and southwestern volcano flanks impacts its hydrogeological functioning. Consequently, the Montagne Pelée hydrogeological conceptual model is marked by several distinguishable aquifers. The upper perched aquifer within recent lava domes is directly involved in, and impacted by, phreatic eruptions, and it supports low flowrate springs. The remaining effective rainfall infiltrates to depth and recharges the hydrothermal system through vertical fractures. The other aquifers are categorized into three groups: northeastern, southeastern and southwestern flank aquifers. This research is a new step toward a better understanding of the Lesser Antilles volcanoes and more broadly of the central and proximal parts of the andesitic active volcanoes.

     

A Non-Homogeneous Model for Kriging Dosimetric Data

Mathematical Geosciences - This paper deals with kriging-based interpolation of dosimetric data. Such data typically show some inhomogeneities that are difficult to take into account by means of...     

MultiscaleDTM: An open-source R package for multiscale geomorphometric analysis

Digital terrain models (DTMs) are datasets containing altitude values above or below a reference level, such as a reference ellipsoid or a tidal datum over geographic space, often in the form of a regularly gridded raster. They can be used to calculate terrain attributes that describe the shape and characteristics of topographic surfaces. Calculating these terrain attributes often requires multiple software packages that can be expensive and specialized. We have created a free, open-source R package, MultiscaleDTM , that allows for the calculation of members from each of the five major thematic groups of terrain attributes: slope, aspect, curvature, relative position, and roughness, from a regularly gridded DTM. Furthermore, these attributes can be calculated at multiple spatial scales of analysis, a key feature that is missing from many other packages. Here, we demonstrate the functionality of the package and provide a simulation exploring the relationship between slope and roughness. When roughness measures do not account for slope, these attributes exhibit a strong positive correlation. To minimize this correlation, we propose a new roughness measure called adjusted standard deviation. In most scenarios tested, this measure produced the lowest rank correlation with slope out of all the roughness measures tested. Lastly, the simulation shows that some existing roughness measures from the literature that are supposed to be independent of slope can actually exhibit a strong inverse relationship with the slope in some cases.     

A flux-limiting wetting–drying method for finite-element shallow-water models,with application to the Scheldt Estuary

We present a flux-limiting wetting–drying approach for finite-element discretizations of the shallow-water equations using discontinuous linear elements for the elevation. The key ingredient of the method is the use of limiters for generalized nodal fluxes. This method is implemented into the Second-generation Louvain-la-Neuve Ice-ocean Model (SLIM), and is verified against standard test cases. The method is further applied to the wetting and drying of sand banks in the Scheldt Estuary, which is located in northern Belgium and the southern Netherlands. The results obtained for both the benchmarks and the realistic problem illustrate the accuracy of the method in describing the hydrodynamics in the vicinity of dry areas. In particular, the method strictly conserves mass, and there is no transport through dry areas.     

Cloning and developmental expression of kinesin superfamily7 (kif7) in the brackish medaka (Oryzias melastigma), a close relative of the Japanese medaka (Oryzias latipes)

kif7 is a member of the kinesin superfamily members which are molecular motor proteins that move along microtubules in a highly regulated manner through ATP hydrolysis. In this paper, we report on the cloning of the Oryziasmelastigmakif7 (omkif7) using primers designed according to the Japanese medaka (Oryziaslatipes) database. The cloned omkif7 has an open reading frame of 3762bp and is deduced to encode a polypeptide of 1254 amino acids that possesses the putative ATP-binding and microtubule-binding motifs in its motor domain at the N-terminal region. We characterized the cloned omkif7 by comparison with the zebrafish kif7. Both omkif7 and zebrafish kif7 are shown to be expressed in all embryonic stages and adult tissues examined with higher expression level in the testis and ovary. Whole-mount in situ hybridization revealed that the expression of omkif7 is ubiquitous during the early stages of embryonic development, but became more restrictive and localized to the brain, fin bud and eye at later development. This study suggested that the brackish O.melastigma can serve as a good seawater model organism for developmental studies by utilizing the resources developed from its close relative of the Japanese medaka.     

Improving the Jason-1 Ground Retracking to Better Account for Attitude Effects

After two years of verification and validation activities of the Jason-1 altimeter data, it appears that all the mission specifications are completely fulfilled. Performances of all instruments embarked onboard the platform meet all the requirements of the mission. However, the star tracker system has shown some occasional abnormal behavior leading to mispointing angles out of the range of Jason-1 system specification which states that the altimeter antenna shall be pointed to the nadir direction with an accuracy below 0.2 degree (3 sigma). This article discusses the platform attitude angle and its consequences on the altimetric estimates. We propose improvements of the Jason-1 retracking process to better account for attitude effects.

The first star tracker anomalies for the Jason-1 mission were detected in April 2002. The Poseidon-2 algorithms were specified assuming an antenna off-nadir angle smaller than 0.3 degree. For higher values, the current method to estimate the ocean parameters is known to be inaccurate. Thus, the algorithm has to be reviewed, and more specifically, the present altimeter echo model has to be modified to meet the desired instrument performance.

Therefore, we derive a second order analytical model of the altimeter echo to take into account attitude angles up to 0.8 degree, and consequently, we adapt the retracking algorithm. This new model is tested on theoretical simulated data using a maximum likelihood estimation. Biases and noise performance characteristics are computed for the different estimated parameters. They are compared to the ones obtained with the current algorithm. This new method provides highly improved estimations for high attitude angles. It is statistically validated on real data by applying it on several cycles of Poseidon-2 raw measurements. The results are found to be consistent with those obtained from simulations. They also fully agree with the TOPEX estimates when flying along the same ground track. Finally, the estimates are also in agreement with the ones available in the current I/GDR (Intermediate Geophysical Data Record) products when mispointing lies in the mission specifications.     

Photoreactivity of chromophoric dissolved organic matter transported by the Mackenzie River to the Beaufort Sea

The photoreactivity of chromophoric dissolved organic matter (CDOM) transported to Arctic shelf environments by rivers has only recently been studied and its quantitative role in Arctic shelf biogeochemistry has received little attention. Sunlight exposure experiments were performed on CDOM collected over a three year period (2002 to 2004) from river, estuary, shelf, and gulf regions of the Western Canadian Arctic. Decreases in CDOM absorption, synchronous fluorescence (SF), and dissolved organic carbon (DOC) concentration were followed after 3 days of exposure, and in two experiments, six optical cutoff filters were used to incrementally remove ultraviolet radiation incident on the samples. Apparent quantum yields for CDOM photobleaching (AQY_ble) and for DOC photomineralization (AQY_min) were computed, as were two AQY spectra (_ble and _min) for the Mackenzie River and a sample from the Mackenzie Shelf. The photoreactivity of Mackenzie River CDOM was highest after break-up and peak discharge and lowest in late summer. The half-lives of CDOM and DOC were estimated at 3.7 days and 4.8 days, respectively, when Mackenzie River water was exposed to full sunlight. Photobleaching of Mackenzie River CDOM fluorescence after most UV-B wavelengths were removed increased the correlation between the river and offshore waters in the Beaufort Sea. When light attenuation from particle- and CDOM-rich river water was considered for the Mackenzie Shelf, our photodegradation models estimated around 10% loss of absorption and < 1% DOC loss, suggesting that sunlight exposure does not substantially degrade CDOM on Arctic shelves.     

Seeing through porous media: An experimental study for unveiling interstitial flows

We describe a novel inexpensive method, utilizing particle image velocimetry (PIV) and refractive index‐matching (RIM) for visualizing and quantifying the flow field within bio‐amended porous media. To date, this technique has been limited to idealized particles, whose refractive index does not match that of fresh water and thus requires specialized and often toxic or hazardous fluids. Here, we use irregularly shaped grains made of hydrogel as the solid matrix and water as the fluid. The advantage of using water is that it provides, for the first time, the opportunity to study both hydraulic and biological processes, which typically occur in soils and streambeds. By using RIM coupled with PIV (RIM‐PIV), we measured the interstitial flow field within a cell packed with granular material consisting of hydrogel grains in a size range of 1–8 mm, both in the presence and in the absence of Sinorhizobium meliloti bacteria (strain Rm8530). We also performed experiments with fluorescent tracer (fluorescein) and fluorescent microbes (Shewanella GPF MR‐1) to test the capability of visualizing solute transport and microbial movements. Results showed that the RIM‐PIV can measure the flow field for both biofilm‐free and biofilm‐covered hydrogel grains. The fluorescent tracer injection showed the ability to visualize both physical (concave surfaces and eddies) and biological (biofilms) transient storage zones, whereas the fluorescent microbe treatment showed the ability to track microbial movements within fluids. We conclude that the proposed methodology is a promising tool to visualize and quantify biofilm attachment, growth, and detachment in a system closer to natural conditions than a 2D flow cell experiment.     

Eddy properties in the Southern California Current System

The California Current System (CCS) is an eastern boundary upwelling system characterized by strong eddies that are often generated at the coast. These eddies contribute to intense, long-distance cross-shelf transport of upwelled water with enhanced biological activity. However, the mechanisms of formation of such coastal eddies, and more importantly their capacity to trap and transport tracers, are poorly understood. Their unpredictability and strong dynamics leave us with an incomplete picture of the physical and biological processes at work, their effects on coastal export, lateral water exchange among eddies and their surrounding waters, and how long and how far these eddies remain coherent structures. Focusing our analysis on the southern part of the CCS, we find a predominance of cyclonic eddies, with a 25-km radius and a SSH amplitude of 6 cm. They are formed near shore and travel slightly northwest offshore for ~?190 days at ~?2 km day^?1. We then study one particular, representative cyclonic eddy using a combined Lagrangian and Eulerian numerical approach to characterize its kinematics. Formed near shore, this eddy trapped a core made up of ~?67% California Current waters and ~?33% California Undercurrent waters. This core was surrounded by other waters while the eddy detached from the coast, leaving the oldest waters at the eddy’s core and the younger waters toward the edge. The eddy traveled several months as a coherent structure, with only limited lateral exchange within the eddy.