Tandem repeat arrays in the mitochondrial genome as a tool for detecting genetic differences among the ark shell Scapharca broughtonii

We found that tandem repeat (TR) arrays were present in the ark shell Scapharca broughtonii mitochondrial genome, and we demonstrated the efficiency of using this TR region as a tool for the detection of genetic differentiation. In samples collected from seven populations off the Japanese, Chinese, Russian and Korean coasts, five TR types with length ranging from 481 to 601 bp (base pairs) were found, as were 18 haplotypes (n = 155). All the Japanese samples from SD, IK, AM and KG, which represented four geographically distinct populations, had the same type of tandem repeat array, 481‐TR. All the samples from China and all but one sample from Russia had the same TR type, 511‐TR; these finding may be strong evidence that the ark shell populations in China and Russia are very similar. Based on a neighbor‐joining dendrogram of haplotypes, the Korean population was divided into two groups as follows: samples with haplotype H481‐3 and samples with haplotypes H601‐1, H601‐2, H601‐3 or H541‐1. Based on the haplotype diversity and nucleotide diversity, the Chinese, Russian and Korean populations showed a higher diversity than Japanese populations (P < 0.05).     

A New Juvenile Specimen of Lufengosaurus Huenei Young, 1941 (Dinosauria: Prosauropoda) from the Lower Jurassic Lower Lufeng Formation of Yunnan, Southwest China

Abstract: A skull and a series of associated cervical vertebrae (ZLJ0112) discovered from the Lower Lufeng Formation (Lower Jurassic) are determined as a juvenile specimen of Lufengosaurus huenei Young 1941 based on amended autapomorphies. Differences between ZLJ0112 and the holotype (sub-adult specimen) are considered as ontogenetic characteristic changes of L. huenei. Since some of these differences are present in other prosauropod dinosaurs (i.e., forms of the maxillary vascular foramen are irregular; the frontal contribution to the dorsal margin of the orbit is substantial; the frontal contribution to the supratemporal fossa is absent; the supratemporal fenestra is visible in lateral view; the supraoccipital inclined at 75 degrees; the parasphenoid rostrum lies level with the occipital condyle; the retroarticular process is short; the axial postzygapophysis project caudally beyond the end of the centrum) they may be common ontogenetic changes in prosauropod dinosaurs.     

A Massive Coccolithophorid Bloom Observed in Mikawa Bay, Japan

In April 1996, a massive algal bloom of the coccolithophorid Gephyrocapsa oceanica developed in both Chita Bay and Atsumi Bay which comprise the bay known as Mikawa Bay of Japan. It was the first record of such a bloom in this area. In Chita Bay, the bloom persisted until the middle of May, however in Atsumi Bay, it remained until early June. From the analysis of salinity, water temperature, and current velocity and direction data, it is considered that the following mechanism accounts for the occurrence and maintenance of the bloom: Before the bloom, the standing crop of phytoplankton was poor, resulting in relatively rich nutrients throughout the bay. Thereafter, with the influx of oceanic water into Mikawa Bay, high salinity occurred firstly in Chita Bay. Under these hydrographic conditions, the bloom occurred first in Chita Bay, and extended throughout the bay with the clockwise circulation of water into Atsumi Bay. In Chita Bay, the bloom was influenced by rainfall and G. oceanica flowed out from this area. Whereas, in Atsumi Bay, the bloom persisted for longer due to the clockwise circulation and another influx of oceanic water.     

Effects of the copepod community structure on fecal pellet flux in Kagoshima bay,a deep,semi-enclosed embayment

Seasonal changes in the shape and size composition of fecal pellets were investigated with sediment trap samples from 50 and 150 m in Kagoshima Bay to evaluate how the mesozooplankton community affects fecal pellet flux. Deep vertical mixing was evident in March, and thermal stratification was developed above 50 m in June, August and November. Chlorophyll a, suspended particulate organic carbon (POC) and copepod abundance were uniform throughout the water column during the seasonal mixing and concentrated above 50 m in the stratified seasons. Calanoids were the most predominant copepods in March and poecilostomatoids composed more than 45% of the copepod community in June, August and November. Fecal pellet fluxes at 50 and 150 m were the highest in March, nearly half of POC flux. The relative contribution declined considerably in the other months, especially for less than 4% of POC flux in August. The decline was corresponded to the predominance of cyclopoids and poecilostomatoids. Cylindrical pellets dominated the fecal matters at both depths throughout the study period, while larger cylindrical pellets nearly disappeared at 150 m in June, August and November. Copepod incubation revealed that cylindrical and oval pellets were egested by calanoids and the other copepods, respectively. We suggest that cylindrical fecal pellets produced by calanoid copepods contribute to feces flux but the predominance of poecilostomatoids and/or cyclopoids decreases feces flux via the increase of oval pellets and fragmentation of larger cylindrical pellets.     

Transport of chemical components in sea ice and under-ice water during melting in the seasonally ice-covered Saroma-ko Lagoon,Hokkaido, Japan

Physico-chemical properties in the brine and under-ice water were measured in Saroma-ko Lagoon on the northeastern coast of Hokkaido, Japan, which is connected to the Sea of Okhotsk, during the period from mid-February through mid-March 2006. The brine within brine channels of the sea ice was collected with a new sampling method examined in this study. Salinity, dissolved inorganic carbon (DIC), total alkalinity (TA), dissolved oxygen (DO), nutrients and oxygen isotopic ratio (δ¹⁸O) contained in the brine within brine channels of the sea ice and in the under-ice water varied largely in both time and space during the ice melt period, when discharge from Saromabetsu River located on the southeast of the lagoon increased markedly due to the onset of snow melting. The under-ice plume expands as far as 4.5 km from the river mouth at mid-March 2006, transporting chemical components supplied from the river into the lagoon. The under-ice river water was likely transported into the sea ice through well-developed brine channels in the sea ice due to upward flushing of water through brine channels occurred by loading of snowfalls deposited over the sea ice. These results suggest that the river water plume plays an important role in supplying chemical components into the sea ice, which may be a key process influencing the biogeochemical cycle in the seasonally ice-covered Saroma-ko Lagoon.     

Environmental controls on phytoplankton production in coastal ecosystems: A case study from Tokyo Bay

Phytoplankton biomass and primary production were examined in their environmental context, for a semi-enclosed bay (Tokyo Bay, Japan) using data from monthly samples collected over a three-year period. Heavy precipitation and high surface temperatures in the late spring and summer gave rise to a highly-stratified water-column and stimulated a series of phytoplankton blooms, whereas during the winter, a weakly-stratified and deeply-mixed water-column led to a rapid decline in phytoplankton biomass under light-limited growth conditions. By incorporating pigment, photophysiological and optical data into a primary production model we show that daily, water-column primary production ranges from ∼160 mg C m⁻² d⁻¹ to 7600 mg C m⁻² d⁻¹. High water turbidity and deep vertical mixing, both separately and in concert, limit the light available for algal growth over much of the year. Annual primary production varied from 370 to 580 g C m⁻² y⁻¹. The relative influences of nutrient limitation and light limitation are assessed. A model is developed that describes this in an explicit manner using photophysiological parameters.