Spatial and temporal variations in free polyamine distributions in Uranouchi Inlet, Japan

Polyamines are an essential component of living organisms that influence normal cell growth and development. Despite the possible importance of polyamines for marine microbial ecology, concentrations of polyamines in seawater are not well known.Using HPLC analysis with a cation exchange column and OPA reagent, we determined polyamine concentrations in seawater without carrying out desalting, concentration or derivatization steps prior to chromatography.In seawater collected from Uranouchi Inlet, putrescine and spermidine were the predominant polyamines, ranging from undetectable (N.D.) to 4.4 nM and N.D. to 2.8 nM, respectively. Though other polyamines were detected, the frequency of detection was much lower than that of putrescine and spermidine; concentrations ranged from N.D. to 0.9 nM for cadaverine, and N.D. to 3.2 nM for norspermidine. Norspermine and spermine were detected in only a few samples; their concentrations varied from N.D. to 3.2 nM and N.D. to 0.5 nM, respectively. These concentrations were higher in the summer.     

An Ecosystem Model Including Nitrogen Isotopes: Perspectives on a Study of the Marine Nitrogen Cycle

We have developed an ecosystem model including two nitrogen isotopes (¹⁴N and ¹⁵N), and validated this model using an actual data set. A study of nitrogen isotopic ratios (δ¹⁵N) using a marine ecosystem model is thought to be most helpful in quantitatively understanding the marine nitrogen cycle. Moreover, the model study may indicate a new potential of δ¹⁵N as a tracer. This model has six compartments: phytoplankton, zooplankton, particulate organic nitrogen, dissolved organic nitrogen, nitrate and ammonium in a two-box model, and has biological processes with/without isotopic fractionation. We have applied this model to the Sea of Okhotsk and successfully reproduced the δ¹⁵N of nitrate measured in seawater and the seasonal variations in δ¹⁵N of sinking particles obtained from sediment trap experiments. Simulated δ¹⁵N of phytoplankton are determined by δ ¹⁵N of nitrate and ammonium, and the nitrogen f-ratio, defined as the ratio of nitrate assimilation by phytoplankton to total nitrogenous nutrient assimilation. Detailed considerations of biological processes in the spring and autumn blooms have demonstrated that there is a significant difference between simulated δ¹⁵N values of phytoplankton, which assimilates only nitrate, and only ammonium, respectively. We suggest that observations of δ ¹⁵N values of phytoplankton, nitrate and ammonium in the spring and autumn blooms may indicate the ratios of nutrient selectivity by phytoplankton. In winter, most of the simulated biogeochemical fluxes decrease rapidly, but nitrification flux decreases much more slowly than the other biogeochemical fluxes. Therefore, simulated δ¹⁵N values and concentrations of ammonium reflect almost only nitrification. We suggest that the nitrification rate can be parameterized with observations of δ¹⁵N of ammonium in winter and a sensitive study varying the parameter of nitrification rate.     

The role of crabs (Macrophthalmus japonicus) burrows on organic carbon cycle in estuarine tidal flat,Japan

The objective of this study is to elucidate the burrow structure and to clarify the role of burrows in material cycle in the tidal flat. In our work, we focused on the dominant species in muddy tidal flat, crab Macrophthalmus japonicus.Burrow structure of Macrophthalmus japonicus was investigated on a Katsuura river tidal flat in Tokushima prefecture, Japan, using in situ resin casting. Sampling was conducted in August 2006, and a total of 48 burrow casts were obtained. Burrows consisted mainly of J-shaped structures (98%) while the rest belonged to U-shaped structures (2%). The maximum measured burrow volume was 120 cm³ and wall surface area was 224 cm², while maximum burrow length and depth were 23.2 cm and 16.5 cm, respectively. Burrow volume and surface area were strongly correlated with carapace width of M. japonicus. Investigation of the individual number of M. japonicus in 13 quadrats (50 × 50 × 20 cm) was conducted using 2 mm sieve. The number of M. japonicus was 15–31 ind./m². Using cohort analysis we estimated that surface area of burrows was 0.07–0.15 m²/m².CO₂ emission rate was measured at the surface sediment during the period from June to December 2008. Results varied from 13.8 ± 2.2 to 49.4 ± 3.2 mg CO₂/m²/h, and organic carbon decomposition was 3.8 ± 0.6–13.5 ± 0.9 mg C/m²/h. This leads the increase of organic carbon decomposition by 1.1 times, because of the expansion of the tidal flat surface area by burrowing activity. Organic carbon decomposition in burrow walls therefore contributed to organic matter decomposition in the tidal flat. These results indicated that in situ activities of Macrophthalmus japonicus significantly influence the material cycle and it is important to consider the existence of burrow in order to understand the fluxes of materials and to evaluate the purification function of the tidal flat.     

Spatial variation in sap flow velocity in semiarid region trees: its impact on stand‐scale transpiration estimates

In this study, we aimed to clarify spatial variations in xylem sap flow, and to determine the impacts of these variations on stand‐scale transpiration (E) estimates. We examined circumferential and radial variations in sap flow velocity (F_d) measured at several directions and depths in tree trunks of black locust (Robinia pseudoacacia) and native oak (Quercus liaotungensis), both of which have ring‐porous wood anatomy, in forest stands on the Loess Plateau, China. We evaluated the impacts of circumferential variations in F_d on stand‐scale transpiration estimates using a simple scaling exercise. We found significant circumferential variations in F_d in the outermost xylem in both species (coefficients of variation = 20–45%). For both species, F_d measured at the inner xylem was smaller than that of the outermost xylem and the F_d at the depth of > 10 mm was almost zero. The simple exercises showed that omitting circumferential variations in F_d affected the E estimate by 16–21%, which was less than the effects of omitting within‐tree radial and tree‐to‐tree variations in F_d in both species. These results suggest that circumferential variations in F_d can be a minor source of error for E estimates compared with within‐tree radial and tree‐to‐tree variations in F_d, regardless of the significant circumferential variations. Copyright © 2011 John Wiley & Sons, Ltd.     

Molecular dynamics study of the crystal structure and phase relation of the GeO2 polymorphs

A two-body interatomic potential model for GeO₂ polymorphs has been determined to simulate the structure change of them by semi-empirical procedure, total lattice energy minimization of GeO₂ polymorphs. Based on this potential, two polymorphs of GeO₂; α-quartz-type and rutile-type, have been reproduced using the molecular dynamics (MD) simulation techniques. Crystal structures, bulk moduli, volume thermal expansion coefficients and enthalpies of these polymorphs of GeO₂ were simulated. In spite of the simple form of the potential, these simulated structural values, bulk moduli and thermal expansivities are in excellent agreement with the reliable experimental data in respect to both polymorphs. Using this potential, MD simulation was further used to study the structural changes of GeO₂ under high pressure. We have investigated the pressure-induced amorphization. As reported in previous experimental studies, quartz-type GeO₂ undergoes pressure-induced crystalline-to-amorphous transformation at room temperature, the same as other quartz compounds; SiO₂, AlPO₄. Under hydrostatic compression, in this study, α-quartz-type GeO₂ transformed to a denser amorphous state at 7.4 GPa with change of the packing of oxygen ions and increase of germanium coordination. At higher pressure still, rutile-type GeO₂ transformed to a new phase of CaCl₂-type structure as a post-rutile candidate. Received: 29 July 1996 / Revised, accepted: 30 April 1997     

Raman scattering and lattice vibrations of Ni2SiO4 spinel at elevated temperature

Raman spectra of Ni₂SiO₄ spinel (O _h ⁷ Z=8) have been measured in the temperature range from 20 to 600 °C and the Raman active vibrations (A _1g +E _g +3F _2g ) have been assigned. A calculation of the optically active lattice vibrations of this spinel has been made, assuming a potential function which combines general valence and short range force constants. The values of the force constants at 20 and 500 °C have been calculated from the vibrational frequencies of the observed Raman spectra and infrared (IR) spectral data. The Ni spinel at 20 °C has a prominently small Si-O bond stretching force constant of K(SiO)=2.356 ～ 2.680 md/Å and a large Ni-O bond stretching constant of K(NiO)=0.843 ～ 1.062 md/Å and these force constants at 500 °C decrease to K(SiO)=2.327 ～ 2.494 md/Å and K(NiO)=0.861 ～ 0.990 md/Å. The Si-O bond is noticeably weakened at high temperatures, despite the small thermal expantion from 1.657 Å (20 °C) to 1.660 Å (500 °C). These changes of the interatomic force constants of the spinel at high temperatures are in accord with the thermal structure changes observed by X-ray diffraction study. The weakened Si-O bond is consistent with the fact that Si atoms in the spinel lattice can diffuse at significant rates at elevated temperature.     

Wind fluctuations near a cold vortex-tropopause funnel system observed by the MU radar

Vertical and temporal variations of three-dimensional wind velocity associated with an upper-tropospheric cold vortex-tropopause funnel system were observed by an MST radar in Japan (the MU radar). Marked changes of vertical velocity and horizontal wind direction were found between the inside and outside of the cold vortex. The vertical velocity activity outside the vortex was asymmetric; it was most active in a sector before the vortex. Unsaturated internal gravity waves in their generation stage contribute predominantly to the vertical velocity activity, suggesting that tropospheric occluded cyclones may be a possible source of middle-atmospheric gravity waves through the geostrophic adjustment process.     

Internal gravity wave selection in the upper troposphere and lower stratosphere observed by the MU radar: Preliminary results

Marked wavelike variations of the lower stratospheric wind observed on 7–10 May, 1985 by an MST radar in Japan (by the MU radar) are analyzed assuming that they are induced by monochromatic internal inertio-gravity waves. These variations are mainly composed of two modes (periods: 22 and 24 hours), both of which have zonal phase velocities (C _X ) slower than the mean westerly wind (). A statistical analysis of the zonal phase velocity shows thatC _X above andC _X below the tropopause jet stream, which is considered to be a vivid proof of wave selection due to the tropospheric mean flow and upward wave emission from the tropopause jet. A comparison between the MU radar results and routine meteorological observations leads to the conclusion that the marked waves appear when the jet stream takes a maximum wind speed.