An elastic–viscous–plastic sea ice model formulated on Arakawa B and C grids

The elastic–viscous–plastic (EVP) sea ice rheology has been introduced in the large-scale Louvain-la-Neuve sea-Ice Model, version 2 (LIM2), and its performance has been evaluated. Centred difference versions of the rheology have been implemented on both an Arakawa B grid and a C grid, and their performance have been intercompared in coupled simulations with the Nucleus for European Modelling of the Ocean (NEMO) model. Integrations with both implementations lead to fairly similar results which compare well with observations and with previous LIM simulations. The C grid version, however, offers a number of advantages: (a) easier ice coupling with NEMO, which is itself defined on a C grid; (b) possibility of representing ice transport across one-cell-wide straits and passages; (c) better representation of inertial-plastic compressive waves. For these reasons, we recommend the use of the C grid EVP formulation of the ice dynamics in future LIM applications.     

Simulation of Meteorological Fields Within and Above Urban and Rural Canopies with a Mesoscale Model

Accurate simulation of air quality at neighbourhood scales (on order of 1-km horizontal grid spacing) requires detailed meteorological fields inside the roughness sub-layer (RSL). Since the assumptions of the roughness approach, used by most of the mesoscale models, are unsatisfactory at this scale, a detailed urban and rural canopy parameterisation, called DA-SM2-U, is developed inside the Penn State/NCAR Mesoscale Model (MM5) to simulate the meteorological fields within and above the urban and rural canopies. DA-SM2-U uses the drag-force approach to represent the dynamic and turbulent effects of the buildings and vegetation, and a modified version of the soil model SM2-U, called SM2-U(3D), to represent the thermodynamic effects of the canopy elements. The turbulence length scale is also modified inside the canopies. SM2-U(3D) assesses the sensible and latent heat fluxes from rural and urban surfaces in each of the computational layers inside the canopies by considering the shadowing effect, the radiative trapping by the street canyons, and the storage heat flux by the artificial surfaces. DA-SM2-U is tested during one simulated day above the city of Philadelphia, U.S.A. It is shown that DA-SM2-U is capable of simulating the important features observed in the urban and rural RSL, as seen in the vertical profiles of the shear stress, turbulent kinetic energy budget components, eddy diffusivity, potential air temperature, and specific humidity. Within the canopies, DA-SM2-U simulates the decrease of the wind speed inside the dense canopies, the skirting of the flow around the canopy blocks, warmer air inside the vegetation canopy than above open areas during the night and conversely during the day, and constantly warmer air inside the urban canopy. The comparison with measurements shows that the surface air temperature above rural and urban areas is better simulated by DA-SM2-U than by the `standard version' of MM5.     

Mineralogical and isotopic record of biotic and abiotic diagenesis of the Callovian-Oxfordian clayey formation of Bure (France)

The Callovian-Oxfordian (COx) clayey unit is being studied in the Eastern part of the Paris Basin at depths between 400 and 500 m depth to assess of its suitability for nuclear waste disposal. The present study combines new mineralogical and isotopic data to describe the sedimentary history of the COx unit. Petrologic study provided evidence of the following diagenetic mineral sequence: (1) framboidal pyrite and micritic calcite, (2) iron-rich euhedral carbonates (ankerite, sideroplesite) and glauconite (3) limpid calcite and dolomite and celestite infilling residual porosity in bioclasts and cracks, (4) chalcedony, (5) quartz/calcite. Pyrite in bioturbations shows a wide range of δ³⁴S (−38‰ to +34.5‰), providing evidence of bacterial sulphate reduction processes in changing sedimentation conditions. The most negative values (−38‰ to −22‰), measured in the lower part of the COx unit indicate precipitation of pyrite in a marine environment with a continuous sulphate supply. The most positive pyrite δ³⁴S values (−14‰ up to +34.5‰) in the upper part of the COx unit indicate pyrite precipitation in a closed system. Celestite δ³⁴S values reflect the last evolutionary stage of the system when bacterial activity ended; however its deposition cannot be possible without sulphate supply due to carbonate bioclast dissolution. The ⁸⁷Sr/⁸⁶Sr ratio of celestite (0.706872-0.707040) is consistent with deposition from Jurassic marine-derived waters. Carbon and oxygen isotopic compositions of bulk calcite and dolomite are consistent with marine carbonates. Siderite, only present in the maximum clay zone, has chemical composition and δ¹⁸O consistent with a marine environment. Its δ¹³C is however lower than those of marine carbonates, suggesting a contribution of ¹³C-depleted carbon from degradation of organic matter. δ¹⁸O values of diagenetic chalcedony range between +27‰ and +31‰, suggesting precipitation from marine-derived pore waters. Late calcite crosscutting a vein filled with chalcedony and celestite, and late euhedral quartz in a limestone from the top of the formation have lower δ¹⁸O values (∼+19‰), suggesting that they precipitated from meteoric fluids, isotopically close to present-day pore waters of the formation. Finally, the study illustrates the transition from very active, biotic diagenesis to abiotic diagenesis. This transition appears to be driven by compaction of the sediment, which inhibited movement of bacterial cells by reduction of porosity and pore sizes, rather than a lack of inorganic carbon or sulphates.     

Variability of the methane trapping in martian subsurface clathrate hydrates

Recent observations have evidenced traces of methane (CH₄) heterogeneously distributed in the martian atmosphere. However, because the lifetime of CH₄ in the atmosphere of Mars is estimated to be around 300-600 years on the basis of photochemistry, its release from a subsurface reservoir or an active primary source of methane have been invoked in the recent literature. Among the existing scenarios, it has been proposed that clathrate hydrates located in the near subsurface of Mars could be at the origin of the small quantities of the detected CH₄. Here, we accurately determine the composition of these clathrate hydrates, as a function of temperature and gas phase composition, by using a hybrid statistical thermodynamic model based on experimental data. Compared to the other recent works, our model allows us to calculate the composition of clathrate hydrates formed from a more plausible composition of the martian atmosphere by considering its main compounds, i.e. carbon dioxide, nitrogen and argon, together with methane. Besides, because there is no low temperature restriction in our model, we are able to determine the composition of clathrate hydrates formed at temperatures corresponding to the extreme ones measured in the polar caps. Our results show that methane enriched clathrate hydrates could be stable in the subsurface of Mars only if a primitive CH₄-rich atmosphere has existed or if a subsurface source of CH₄ has been (or is still) present.     

Lower Triassic δC isotope curve from shallow-marine carbonates in Japan, Panthalassa realm: Confirmation of the Tethys δC curve

δ¹³C data from Tethyan sections provide evidence of profound changes in the carbon cycle during the Lower Triassic. Sections from the Panthalassa realm were investigated to establish whether these variations are also present there. In the Jurassic accretionary wedges in Japan, exotic blocks having a Panthalassan affinity, have been incorporated. The majority of the blocks are pelagic cherts but rare shallow-water carbonates are also present. We present a δ¹³C study on the Lower Triassic of a shallow-water carbonate succession deposited on a mid-oceanic seamount and accreted to the Chichibu Belt, Japan. Two sections have been measured at Kamura, central Kyushu Island. The carbon isotope curve shows depleted values across the Permian–Triassic boundary (PTB), subsequently followed by an increase to heavier values into the Dienerian, culminating in a maximum of almost +4‰ V-PDB, before a steep drop at a stratigraphic gap. Low values are recorded in the Smithian, but rise to enriched δ¹³C values > +3.5‰ near the Smithian–Spathian boundary. The observed trend of the stable carbon isotope curve from Japanese sediments mirrors the curves derived from sections in the Tethys (e.g. Italy, Iran, Turkey, Oman and the South China Nanpanjing Basin). Our results support the interpretation of this curve as representing a global trend across the PTB and in the Lower Triassic, although some distinct features are absent around the Dienerian/Smithian boundary. Profound variations of the carbon isotope curve in the Lower Triassic are presented for the first time from a marine section outside of the Tethys. They indicate severe, global changes in the Lower Triassic carbon cycle, and the causative processes must have significantly contributed to the delayed biotic recovery after the PTB. Large amounts of carbon were shifted between carbon reservoirs, most probably between shallow- and deep-ocean waters, and/or ocean and sediment. Anoxia followed by overturn of the ocean water masses may have been the mechanism which quickly altered ecological conditions in the ocean leading to variable availability of nutrients and oxygen, and changes in isotope composition of the available carbon in the surface waters that was incorporated in the precipitated carbonate.     

Multiscale characterization of pyritized plant tissues in blueschist facies metamorphic rocks

Pyritized plant tissues with well-preserved morphology were studied in rocks from Vanoise (western Alps, France) that experienced high-pressure, low-temperature metamorphic conditions in the blueschist facies during the Alpine orogeny. Organic and inorganic phases composing these fossils were characterized down to the nanometer scale by Raman microspectroscopy, scanning transmission X-ray microscopy and transmission electron microscopy. The graphitic but disordered organic matter composing these fossils is chemically and structurally homogeneous and mostly contains aromatic functional groups. Its original chemistry remains undefined likely because it was significantly transformed by diagenetic processes and/or thermal degradation during metamorphism. Various mineral phases are closely associated with this organic matter, including sulphides such as pyrite and pyrrhotite, carbonates such as ankerite and calcite, and iron oxides. A tentative time sequence of formation of these diverse mineral phases relative to organic matter decay is proposed. The absence of traces of organic matter sulphurization, the pervasive pyritization of the vascular tissues and the presence of ankerite suggest that the depositional/diagenetic environment of these metasediments was likely rich in reactive iron. Fe-sulphides and ankerite likely precipitated early and might have promoted the preservation of the fossilized biological soft tissues by providing mechanical resistance to compaction during diagenesis and subsequent metamorphism. In contrast, iron oxides which form rims of 100-nm in thickness at the interface between organic matter and Fe-sulphides may result from metamorphic processes. This study illustrates that it may be possible in some instances to deconvolve metamorphic from diagenetic imprints and opens new avenues to better constrain processes that may allow the preservation of organic fossils during diagenesis and metamorphism.     

Micro-scale flood risk analysis based on detailed 2D hydraulic modelling and high resolution geographic data

The paper presents a consistent micro-scale flood risk analysis procedure, relying on detailed 2D inundation modelling as well as on high resolution topographic and land use database. The flow model is based on the shallow-water equations, solved by means of a finite volume scheme on multi-block structured grids. Using highly accurate laser altimetry, the simulations are performed with a typical grid spacing of 2 m, which is fine enough to represent the flow at the scale of individual buildings. Consequently, the outcomes of hydraulic modelling constitute suitable inputs for the subsequent exposure analysis, performed at a micro-scale using detailed land use maps and geographic database. Eventually, the procedure incorporates social flood impact analysis and evaluation of direct economic damage to residential buildings. Besides detailing the characteristics and performance of the hydraulic model, the paper describes the flow of data within the overall flood risk analysis procedure and demonstrates its applicability by means of a case study, for which two different flood protection measures were evaluated.     

Assessment of the impact of pools on the water isotopic signature of a boreal patterned peatland

Recent studies have shown that boreal peatlands exhibit considerable chemical variability but without clear spatial pattern. This chemical heterogeneity illustrates the complex hydrological behaviour of peatlands, particularly patterned fen. Isotopic, chemical and physical tracers were used to describe the hydrological behaviour of a small boreal headwater catchment (13 ha) during the snow‐free period with a special emphasis on the downstream patterned fen. Results showed that shallow pools were mixed every day during the summer, particularly during nights or discharge periods. Despite large water storage capacities in pools, which should induce large buffer effect, hydrological behaviour of patterned fen is more similar to a piston flow process. This is probably because of the division of the fen into successive small cascading streamflow reservoirs. The consequences were a rapid change of the chemical signature throughout the fen, particularly upstream. A spatial pattern was observed downstream in early summer. The isotopic signature passed from an upstream depleted and homogeneous signature to a progressively enriched downstream signature. However, this pattern was not identified during the wetter period (late summer), probably because the discharge, which dominated the water budget, decreased the surface water residence time and flushed a large proportion of stored surface water. We developed for this patterned fen a conceptual model of the surface flow to explain these particular mixing effects and the implications on the dynamics of the chemical signature. To further our understanding of similar boreal headwater catchments, future work should include the development of a multiple mixed‐reservoir model. Copyright © 2015 John Wiley & Sons, Ltd.     

Mixing law versus discharge and electrical conductivity relationships: application to an alpine proglacial stream

Mixing laws have been used in hydrogeology for decades. In glacial hydrology, they are used to determine the contributions of the different reservoirs supplying the proglacial stream. However, some assumptions about discharge–solute matter and discharge–electrical conductivity (EC) relationships have led to erroneous conclusions. Analysis of a theoretical example indicated a hyperbolic relationship between discharge and solute matter concentration/EC for two reservoirs. We applied this approach to experimental data from the Baounet Glacier (Savoie, France), assuming that the proglacial stream is provided by a combination of watershed groundwater flow (diurnally stable and with high EC) and quick drainage from the glacier (low EC and discharge that change very quickly). Applying mixing laws allowed us to characterise these two flows and to separate the quick flows (glacial ablation and rainfalls). Copyright © 2011 John Wiley & Sons, Ltd.     

Growth anomalies on Acropora cytherea corals

This ten-year study examined the morphological, physiological, and ecological characteristics of coral growth anomalies on Acropora cytherea on Amuro Island, Okinawa, Japan. The objectives of the study were to assess whether the growth anomalies, identified as diffuse disruptions on the skeleton: (i) were more prevalent on large colonies than on small colonies, (ii) were more common near the center of the colonies than peripherally, (iii) affected colony growth and mortality, and (iv) affected coral-colony fecundity and photosynthetic capacity. We hypothesized that the growth anomalies were signs of the onset of aging. The growth anomalies were more prevalent on colonies >2 m diameter, and were concentrated near the central (older) portions of the colonies. The growth anomalies were also associated with reduced productivity and dysfunctional gametogenesis. Still, the growth anomalies did not appear to affect colony survival. The contact experiments showed that the growth anomalies were not contagious, and were most likely a sign of aging that was exacerbated by thermal stress.