Isolates of Staphylococcus aureus and saprophyticus resistant to antimicrobials isolated from the Lebanese aquatic environment

The indiscriminate use of antimicrobials especially in developing countries has evoked serious bacterial resistance and led to the emergence of new and highly resistant strains of bacteria to commonly used antimicrobials. In Lebanon, pollution levels and bacterial infections are increasing at a high rate as a result of inadequate control measures to limit untreated effluent discharges into the sea or freshwater resources. The aim of this study was to isolate and molecularly characterize various Staphylococcus strains isolated from sea water, fresh water, sediments, and crab samples collected from representative communities along the coast of Lebanon. The results on the antimicrobial resistance indicated that the level of resistance of Staphylococcus aureus varied with various antimicrobials tested. The resistance patterns ranged between 45% in freshwater isolates and 54.8% in seawater ones. Fifty one percent of the tested isolates have shown resistance to at least one of the five tested antimicrobials; with seawater isolates exhibiting the highest rates of antimicrobial resistance.     

Using packrat middens to assess grazing effects on vegetation change

Research on grazing effects usually compares the same sites through time or grazed and ungrazed sites over the same time period. Both approaches are complicated in arid environments where grazing can have a long undocumented history and landscapes can be spatially heterogenous. This work employs both approaches simultaneously by comparing grazed and ungrazed samples through both time and space using fossil plant macrofossils and pollen from packrat middens. A series of 27 middens, spanning from 995 yr BP to the present, were collected from Glen Canyon in southeastern Utah, USA. These middens detail vegetation change just prior to, and following, the historical introduction of domesticated grazers and also compares assemblages from nearby ungrazable mesas. Pre-grazing middens, and modern middens from ungrazed areas, record more native grasses, native herbs, and native shrubs such as Rhus trilobata, Amelanchier utahensis, and Shepherdia rotundifolia than modern middens from grazed areas. Ordinations demonstrate that site-to-site variability is more important than any temporal changes, making selection of comparable grazed versus ungrazed study treatments difficult. But within similar sites, the changes through time show that grazing lowered the number of taxa recorded, and lessened the pre-existing site differences, homogenizing the resultant plant associations in this desert grassland.     

Spatial variation and commercial fishing of New Zealand abalone (Haliotis iris and H. australis)

The New Zealand abalone fishery produces about 1200 t annually, mostly from southern New Zealand. The fishery, based on Haliotis iris, is managed over broad management areas within which fishing intensity is spatially dispersed. The size composition of the commercial catch depends on location within a management area but is similar for divers fishing individual populations of H. iris and reflects the size composition of natural populations. For most populations, length‐frequency distributions of abalone were normally distributed: the mean shell length of H. iris was found to vary within populations over small spatial scales (100s m). The relative abundance of juvenile H. iris was low in relation to adults suggesting, at least for exposed populations, that rates of recruitment to populations of H. iris may be low. The relative abundance and mean shell length of juveniles and adults of H. australis was much less than that of H. iris. The scarcity of H. australis and the lack of separate catch quotas for the two species are factors which explain the low to zero catch of H. australis. The spatial variation in the size composition of H. iris suggests that management would be more appropriate over spatial scales which reflect local populations rather than the large spatial areas which are used to manage the New Zealand abalone fishery.     

Crystal morphology and surface structures of orthorhombic MgSiO3 in the presence of divalent impurity ions

Many rheological and transport properties of rocks are determined by the grain boundary structures of their constituent minerals. These grain boundaries often also hold a high concentration of dopant ions. Here, as a first step towards modelling the transport and rheological behaviour of the lower mantle, we report the results of lattice static simulations on the surface structures of Fe²⁺ and Ca²⁺-doped orthorhombic MgSiO₃-perovskite. For all the surfaces we studied, the energies of the doped structures are lowered, sometimes by more than 1 J/m², with respect to the pure surfaces. From our calculated crystal morphologies, we predict that the grains become more tabular as the concentration of Fe²⁺ ions increases, while under equilibrium conditions the grains are cubic. By calculating the replacement energies of Mg²⁺ by Fe²⁺ and Ca²⁺ ions in the six outermost surface layers, we conclude that these divalent ions would tend to segregate onto the crystal surfaces. We suggest, therefore, that the grain boundary structure and rheology of MgSiO₃-perovskite dominated rocks will be strongly affected by the presence of minor elements in the lower mantle.     

Simulations of 20th and 21st century Arctic cloud amount in the global climate models assessed in the IPCC AR4

Simulations of late 20th and 21st century Arctic cloud amount from 20 global climate models (GCMs) in the Coupled Model Intercomparison Project phase 3 (CMIP3) dataset are synthesized and assessed. Under recent climatic conditions, GCMs realistically simulate the spatial distribution of Arctic clouds, the magnitude of cloudiness during the warmest seasons (summer–autumn), and the prevalence of low clouds as the predominant type. The greatest intermodel spread and most pronounced model error of excessive cloudiness coincides with the coldest seasons (winter–spring) and locations (perennial ice pack, Greenland, and the Canadian Archipelago). Under greenhouse forcing (SRES A1B emissions scenario) the Arctic is expected to become cloudier, especially during autumn and over sea ice, in tandem with cloud decreases in middle latitudes. Projected cloud changes for the late 21st century depend strongly on the simulated modern (late 20th century) annual cycle of Arctic cloud amount: GCMs that correctly simulate more clouds during summer than winter at present also tend to simulate more clouds in the future. The simulated Arctic cloud changes display a tripole structure aloft, with largest increases concentrated at low levels (below 700 hPa) and high levels (above 400 hPa) but little change in the middle troposphere. The changes in cloud radiative forcing suggest that the cloud changes are a positive feedback annually but negative during summer. Of potential explanations for the simulated Arctic cloud response, local evaporation is the leading candidate based on its high correlation with the cloud changes. The polar cloud changes are also significantly correlated with model resolution: GCMs with higher spatial resolution tend to produce larger future cloud increases.     

Where fast weathering creates thin regolith and slow weathering creates thick regolith

Weathering disaggregates rock into regolith – the fractured or granular earth material that sustains life on the continental land surface. Here, we investigate what controls the depth of regolith formed on ridges of two rock compositions with similar initial porosities in Virginia (USA). A priori, we predicted that the regolith on diabase would be thicker than on granite because the dominant mineral (feldspar) in the diabase weathers faster than its granitic counterpart. However, weathering advanced 20× deeper into the granite than the diabase. The 20 × ‐thicker regolith is attributed mainly to connected micron‐sized pores, microfractures formed around oxidizing biotite at 20 m depth, and the lower iron (Fe) content in the felsic rock. Such porosity allows pervasive advection and deep oxidation in the granite. These observations may explain why regolith worldwide is thicker on felsic compared to mafic rock under similar conditions. To understand regolith formation will require better understanding of such deep oxidation reactions and how they impact fluid flow during weathering. Copyright © 2012 John Wiley & Sons, Ltd.     

High-resolution carbon isotope changes in the Permian–Triassic boundary interval, Chongqing, South China; implications for control and growth of earliest Triassic microbialites

High-resolution δ¹³C_CARB analysis of the Permian–Triassic boundary (PTB) interval at the Laolongdong section, Beibei, near the city of Chongqing, south China, encompasses the latest Permian and earliest Triassic major facies changes in the South China Block (SCB). Microbialites form a distinctive unit in the lowermost 190 cm above the top of the Changhsing Formation (latest Permian) at Laolongdong, comparable to a range of earliest Triassic sites in low latitudes in the Tethyan area. The data show that declining values of δ¹³C_CARB, well-known globally, began at the base of the microbialite. High positive values (+3 to 4 ppt) of δ¹³C_CARB in the Late Permian are interpreted to indicate storage of ¹²C in the deep waters of a stratified ocean, that was released during ocean overturn in the earliest Triassic, contributing to the distinctive fall in isotope values; this interpretation has been stated by other authors and is followed here. The δ¹³C_CARB curve shows fluctuations within the microbialite unit, which are not reflected in the microbialite structure. Comparisons between microbialite branches and adjacent micritic sediment show little difference in δ¹³C_CARB, demonstrating that the microbialite grew in equilibrium with surrounding seawater. The Early Triassic microbialites are interpreted to be a response to upwelling of bicarbonate-rich poorly oxygenated water in low latitudes of Tethys Ocean, consistent with current ocean models for the PTB interval. However, the decline of δ¹³C_CARB may be due to a combination of processes, including productivity collapse resulting from mass extinction, return of deep water to ocean surface, oxidation of methane released from methane hydrate destabilisation, and atmospheric deterioration. Nevertheless, build-up of bicarbonate-rich anoxic deep waters may be expected as a result of the partial isolation of Tethys, due to continental geography; release of bicarbonate-rich deep water, by ocean upwelling, in the earliest Triassic may have been an inevitable consequence of this combination of circumstances.     

Trophic structure of mesopelagic fishes in the Gulf of Mexico revealed by gut content and stable isotope analyses

Mesopelagic fishes represent an important component of the marine food web due to their global distributions, high abundances and ability to transport organic material throughout a large part of the water column. This study combined stable isotope (SIAs) and gut content analyses (GCAs) to characterize the trophic structure of mesopelagic fishes in the North‐Central Gulf of Mexico. Additionally, this study examined whether mesopelagic fishes utilized chemosynthetic energy from cold seeps. Specimens were collected (9–25 August 2007) over three deep (>1,000 m) cold seeps at discrete depths (surface to 1,503 m) over the diurnal cycle. GCA classified 31 species (five families) of mesopelagic fishes into five feeding guilds: piscivores, large crustacean consumers, copepod consumers, generalists and mixed zooplanktivores. However, these guilds were less clearly defined based on stable isotope mixing model (MixSIAR) results, suggesting diets may be more mixed over longer time periods (weeks–months) and across co‐occurring species. Copepods were likely important for the majority of mesopelagic fishes, consistent with GCA (this study) and previous literature. MixSIAR results also identified non‐crustacean prey items, including salps and pteropods, as potentially important prey items for mesopelagic fishes, including those fishes not analysed in GCA (Sternoptyx spp. and Melamphaidae). Salps and other soft‐bodied species are often missed in GCAs. Mesopelagic fishes had δ¹³C results consistent with particulate organic matter serving as the baseline organic carbon source, fueling up to three trophic levels. Fishes that undergo diel vertical migration were depleted in ¹⁵N relative to weak migrators, consistent with depth‐specific isotope trends in sources and consumers, and assimilation of ¹⁵N‐depleted organic matter in surface waters. Linear correlations between fish size and δ¹⁵N values suggested ontogenetic changes in fish diets for several species. While there was no direct measure of mesopelagic fishes assimilating chemosynthetic material, detection of infrequent consumption of this food resource may be hindered by the assimilation of isotopically enriched photosynthetic organic matter. By utilizing multiple dietary metrics (e.g. GCA, δ¹³C, δ¹⁵N, MixSIAR), this study better defined the trophic structure of mesopelagic fishes and allowed for insights on feeding, ultimately providing useful baseline information from which to track mesopelagic trophodynamics over time and space.