Cloning and expression of alpha class glutathione S-transferase gene from the small hermaphroditic fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae)

In order to assess its potential as a biomarker of aquatic pollution, an alpha class glutathione S-transferase gene (GSTalpha gene) was cloned from the small hermaphroditic fish Rivulus marmoratus. The R. marmoratus GSTalpha gene spanned 1.3 kb, consisting of 6 exons encoding 221 amino acid residues. It showed high similarity to zebrafish GST. We named this R. marmoratus GSTalpha gene as rm-GSTalpha. The cDNA of the rm-GSTalpha gene was also investigated for its phylogeny, tissue-specific and chemical-induced expression. Rm-GSTalpha was subcloned into a 6 x His-tagged pCRT7 TOPO TA expression vector to produce the recombinant 6 x His-tagged rm-GST protein. This will be used in future to raise an rm-GSTalpha antibody for use in the study of phase II metabolism involved in detoxification. We also exposed R. marmoratus to 300 microg/l of 4-nonylphenol in water, and found approximately 4-fold induction of R. marmoratus GSTalpha mRNA in the treated animals. In this paper, we discuss the characteristics of the R. marmoratus GSTalpha gene as well as its potential use in relation to environmental pollution.     

Computer simulation of three-dimensional stellar systems in cylindrical coordinates

TheN-body problem does not have an exact and analytic solution, and computer technique or computer simulation can be a good candidate to solve it. Computing speed in computer simulation is very important. There are many algorithms and computational methods in computer simulation which reduce computer time.In this report a computer simulation model in a cylindrical coordinate, in which the FACR (Fourier Analysis and Cyclic Reduction) method is used, has been proposed and demonstrated the presence of spiral, barred, and ringed galaxy. The method using a cylindrical grid has good symmetrical properties specially for rotating stellar systems.     

Transport and sediment–water partitioning of trace metals in acid mine drainage: an example from the abandoned Kwangyang Au–Ag mine area, South Korea

Transport and sediment–water partitioning of trace metals (Cr, Co, Fe, Pb, Cu, Ni, Zn, Cd) in acid mine drainage were studied in two creeks in the Kwangyang Au–Ag mine area, southern part of Korea. Chemical analysis of stream waters and the weak acid (0.1 N HCl) extraction, strong acid (HF–HNO₃–HClO₄) extraction, and sequential extraction of stream sediments were performed. Heavy metal pollution of sediments was higher in Chonam-ri creek than in Sagok-ri creek, because there is a larger source of base metal sulfides in the ores and waste dump upstream of Chonam-ri creek. The sediment–water distribution coefficients (K _d) for metals in both creeks were dependent on the water pH and decreased in the order Pb ≈ Al > Cu > Mn > Zn > Co > Ni ≈ Cd. K _d values for Al, Cu and Zn were very sensitive to changes in pH. The results of sequential extraction indicated that among non-residual fractions, Fe–Mn oxides are most important for retaining trace metals in the sediments. Therefore, the precipitation of Fe(–Mn) oxides due to pH increase in downstream sites plays an important role in regulating the concentrations of dissolved trace metals in both creeks. For Al, Co, Cu, Mn, Pb and Zn, the metal concentrations determined by 0.1 N HCl extraction (Korean Standard Method for Soil Pollution) were almost identical to the cumulative concentrations determined for the first three weakly-bound fractions (exchangeable + bound to carbonates + bound to Fe–Mn oxides) in the sequential extraction procedure. This suggests that 0.1 N HCl extraction can be effectively used to assess the environmentally available and/or bioavailable forms of trace metals in natural stream sediments.     

Grain-size reduction of feldspars by fracturing and neocrystallization in a low-grade granitic mylonite and its rheological effect

Feldspar grain-size reduction occurred due to the fracturing of plagioclase and K-feldspar, myrmekite formation and neocrystallization of albitic plagioclase along shear fractures of K-feldspar porphyroclasts in the leucocratic granitic rocks from the Yecheon shear zone of South Korea that was deformed under a middle greenschist-facies condition. The neocrystallization of albitic plagioclase was induced by strain energy adjacent to the shear fractures and by chemical free energy due to the compositional disequilibrium between infiltrating Na-rich fluid and host K-feldspar. With increasing deformation from protomylonite to mylonite, alternating layers of feldspar, quartz and muscovite developed. The fine-grained feldspar-rich layers were deformed dominantly by granular flow, while quartz ribbons were deformed by dislocation creep. With layer development and a more distributed strain in the mylonite, lower stresses in the quartz-rich layers resulted in a larger size of dynamically recrystallized quartz grains than that of the protomylonite.     

Response of submersed aquatic vegetation (SAV) in Lake Pontchartrain, Louisiana to the 1997–2001 El Niño Southern Oscillation shifts

Lake Pontchartrain is a large, shallow, low salinity estuary north of New Orleans, Louisiana. It is a water quality impaired system with restoration efforts in progress. One restoration goal is the reestablishment of historic submersed aquatic vegetation (SAV;Vallisneria americana Michx. andRuppia maritima L.), which has been in a state of decline since first studied in 1953. Annual SAV surveys and monthly water quality monitoring were conducted at four to five sites from 1996 through 2003 to evaluate trends and determine the causes of SAV change. We found a rapid increase in the distribution and abundance ofR. maritima in 1999 that persisted through 2002. An El Niño Southern Oscillation shift occurred between 1997 and 2001, which produced a drought in southern Louisiana as an ancillary effect of La Niña. This study was conducted to investigate causal links between the El Niño to La Niña climate phase shift and SAV change. We found that salinity and water clarity increased during La Niña. Increased water clarity produced a rapid increase in the euryhaline speciesR. maritima in deeper water and at historic sites where SAV had not been found since 1953. As salinity increased, the freshwater speciesV. americana andMyriophyllum spicatum L. declined, andNajas guadalupensis (Spreng.) Magnus andPotamogeton perfoliatus L. disappeared. In 2003, after the La Niña phase, salinity and water clarity decreased,R. maritima decreased, and the freshwater species increased, butP. perfoliatus was still absent. We found that salinity controlled SAV species composition, and water clarity controlled SAV colonization depth (Z_col=2.3/K_d). Our study demonstrated that climatic shifts cause cyclic changes in Lake Pontchartrain SAV and that restoration could be accomplished by improving water clarity. Due to the sensitivity of SAV to environmental change, similar responses to short-term and long-term climate changes should occur in other estuarine systems.     

Cloning and expression of alpha class glutathione S-transferase gene from the small hermaphroditic fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae)

In order to assess its potential as a biomarker of aquatic pollution, an alpha class glutathione S-transferase gene (GSTα gene) was cloned from the small hermaphroditic fish Rivulus marmoratus. The R. marmoratus GSTα gene spanned 1.3 kb, consisting of 6 exons encoding 221 amino acid residues. It showed high similarity to zebrafish GST. We named this R. marmoratus GSTα gene as rm-GSTα. The cDNA of the rm-GSTα gene was also investigated for its phylogeny, tissue-specific and chemical-induced expression. Rm-GSTα was subcloned into a 6 × His-tagged pCR^®T7 TOPO TA expression vector to produce the recombinant 6 × His-tagged rm-GST protein. This will be used in future to raise an rm-GSTα antibody for use in the study of phase II metabolism involved in detoxification. We also exposed R. marmoratus to 300 μg/l of 4-nonylphenol in water, and found approximately 4-fold induction of R. marmoratus GSTα mRNA in the treated animals. In this paper, we discuss the characteristics of the R. marmoratus GSTα gene as well as its potential use in relation to environmental pollution.     

Relationship between transmissivity and specific capacity in the volcanic aquifers of Jeju Island, Korea

Transmissivity is often estimated using specific capacity data when standard pumping test data are not available or the drawdown is stabilized early, as in this study. Previous researchers studied the relationship between transmissivity and specific capacity in the leaky aquifer system of volcanic rocks on Jeju Island, Korea, using the Cooper–Jacob equation. The current study utilizes the Moench leaky aquifer model. The linear relationship between transmissivity and specific capacity on a log–log scale for volcanic aquifers on Jeju Island is remarkably strong, with a correlation coefficient of 0.94. The width of the 90% prediction interval is about 0.89 log cycles, indicating a ±0.44 order of magnitude uncertainty when transmissivity is estimated using specific capacity.     

Tensile strength characteristics of contaminated and compacted sand-bentonite mixtures

A theoretical and experimental study of the unconfined penetration test (UP) method was conducted to determine the tensile strength of contaminated and compacted sand-bentonite mixtures, which are used widely in the landfill construction sites as a clay liner. To do this, the original UP device and experimental procedure were modified to reduce the measurement errors and named as the improved unconfined penetration (IUP) test. Experiments were carried out to examine the variation in tensile strength as a function of disk diameter, loading rate and pH level. The results of the experiments provided the following important findings. The tensile strength increases with an increase in the disk diameter. The tensile strength is not sensitive to the loading rate in the range of 0.1%/min–1.0%/min. A specimen compacted with a low pH value of water shows a high tensile strength, because a lower pH solution increases soil particle bonding stresses.     

A seismic retrofit method by connecting viscous dampers for microelectronics factories

The implementation of viscous dampers to microelectronics factories has been previously proved not to affect the micro‐vibration of the factories in operation so that the vibration‐sensitive manufacturing process will not be interfered. Therefore, a seismic retrofit strategy which employs the viscous dampers installed in between the exterior and interior structures of the ‘fab’ structure is proposed in the study. The design formulas corresponding to the proposed retrofit method are derived using the non‐proportional damping theory. Based on the study, it is found that the added damping ratio to the fab structure depends greatly on the frequency ratio of the two structures in addition to the damping coefficients of the added dampers. Outside the bandwidth of the frequency ratio in which the added damping ratio is very sensitive to the variation of the frequency ratio, the added damping ratio can be well captured using the classical damping theory. Copyright © 2007 John Wiley & Sons, Ltd.