A tomographic imagery segmentation methodology for three-phase geomaterials based on simultaneous region growing

X-ray computed tomography is a powerful non-destructive technique used in many domains to obtain the three-dimensional representation of objects, starting from the reconstitution of two-dimensional images of radiographic scanning. This technique is now able to analyze objects within a few micron resolutions. Consequently, X-ray microcomputed tomography opens perspectives for the analysis of the fabric of multiphase geomaterials such as soils, concretes, rocks and ceramics. To be able to characterize the spatial distribution of the different phases in such complex and disordered materials, automated phase recognition has to be implemented through image segmentation. A crucial difficulty in segmenting images lies in the presence of noise in the obtained tomographic representation, making it difficult to assign a specific phase to each voxel of the image. In the present study, simultaneous region growing is used to reconstitute the three-dimensional segmented image of granular materials. First, based on a set of expected phases in the image, regions where specific phases are sure to be present are identified, leaving uncertain regions of the image unidentified. Subsequently, the identified regions are grown until growing phases meet each other with vanishing unidentified regions. The method requires a limited number of manual parameters that are easily determined. The developed method is illustrated based on three applications on granular materials, comparing the phase volume fractions obtained by segmentation with macroscopic data. It is demonstrated that the algorithm rapidly converges and fills the image after a few iterations.     

Zircon U‐Pb/Lu‐Hf and monazite chemical dating of the Tirodi biotite gneiss: implication for latest Palaeoproterozoic to Early Mesoproterozoic orogenesis in the Central Indian Tectonic Zone

In this investigation, we reconstruct the latest Palaeoproterozoic to Early Mesoproterozoic orogenic events along the southern margin of the Central Indian Tectonic Zone (CITZ), using sensitive high resolution ion microprobe (SHRIMP) U‐Pb zircon dating and Lu‐Hf isotope analyses of zircon and Th‐U‐Pb chemical dating of monazite from samples of the Tirodi biotite gneiss (TBG) unit in the Sausar Mobile Belt (SMB), the latter constituting the southernmost litho‐tectonic component of the CITZ. U‐Pb zircon dating of one migmatitic gneiss sample from the type locality of the Tirodi biotite gneiss in the northern domain of the SMB has yielded an age of 1618 ± 8 Ma, which is considered to be the time of magmatic crystallization of its protolith. Combined U‐Pb zircon and monazite chemical dating of two granite gneiss samples from the southern domain of the SMB broadly constrain magmatic crystallization between 1603 ± 23 Ma and 1584 ± 17 Ma and an overprinting metamorphic recrystallization event at 1572 ± 7 Ma. Monazites from the granite gneiss samples also record a terminal metamorphic event at 1415 ± 23 Ma. Lu‐Hf isotopic analyses of zircons reveal fundamentally different source rock reservoirs for the protoliths of these magmatic rocks across the SMB. While the type TBG from the northern domain was derived from an Early Palaeoproterozoic source T(Hf) from 2093 to 2523 Ma, with a mean value at 2379 Ma) of essentially juvenile material with minor crustal components (εHf(t) from −3.3 to + 3.7), the granite from the southern domain had a mature crustal source (εHf(t) from −12.5 to −21.9) of Palaeoarchaean age T(Hf) from 3051 to 3630 Ma, with a mean value at 3218 Ma). When integrated with metamorphic information previously obtained from the 1.6 Ga ultra‐high temperature granulite facies metamorphic event in the SMB, the discrete magmatic and metamorphic events between 1.62/1.60 Ga and 1.42 Ga can be correlated with the formation of an Early Mesoproterozoic accretionary orogen in the CITZ. Copyright © 2011 John Wiley & Sons, Ltd.     

Middle Pleistocene biota of the early Anglian ‘Arctic Fresh-water Bed’ at Ostend, Norfolk, UK

At three sites along the North Norfolk coast, freshwater sediments containing arctic plants have been reported to occur immediately beneath the glacial deposits. The sections at Mundesley and Beeston are no longer visible but a small exposure of this ‘Arctic Fresh-water Bed’ has recently been rediscovered at Ostend near Bacton. The fossils from this deposit are distinctly high boreal/arctic in character, indicating a small, possibly ephemeral, pool in a generally open landscape supporting some dwarf shrubs and conifers. Noteworthy records include three beetle species (Pterostichus brevicornis, P. middendorffi and Helophorus obscurellus) that today have their closest occurrences on either the Kanin or Kola peninsulas in arctic Russia. A Mutual Climatic Range reconstruction on the limited beetle fauna suggests that the mean temperatures of the warmest and coldest months were between 9 °C and 11 °C and between −36 °C and −10 °C, respectively. Other noteworthy occurrences include the aquatic pulmonate gastropod Gyraulus rossmaessleri (second and earliest British record), the ostracod Amplocypris tonnensis (earliest British record), ground squirrel (Spermophilus sp.) and the first record of arctic lemming (Dicrostonyx sp.) from the Cromer Forest-bed Formation (CF-bF). The ‘Arctic Fresh-water Bed’ has been assigned to the Bacton Member of the CF-bF and formed during the early Anglian, correlated with Marine Isotope Stage (MIS) 12 of the deep sea record. The Ostend assemblage is therefore important in providing a glimpse of conditions that occurred during a major cold stage in the early Middle Pleistocene.     

Geochemistry and stable isotope investigation of acid mine drainage associated with abandoned coal mines in central Montana,USA

The Great Falls-Lewistown Coal Field (GFLCF) in central Montana contains over 400 abandoned underground coal mines, many of which are discharging acidic water with serious environmental consequences. Areas of the mines that are completely submerged by groundwater have circum-neutral pH and relatively low concentrations of metals, whereas areas that are only partially flooded or freely draining have acidic pH (< 3) and high concentrations of metals. The pH of the mine drains either decreases or increases after discharging to the surface, depending on the initial ratio of acidity (mainly Al and Fe²⁺) to alkalinity (mainly HCO₃^?). In acidic, Fe-rich waters, oxidation of Fe²⁺ after exposure to air is microbially catalyzed and follows zero-order kinetics, with computed rate constants falling in the range of 0.97 to 1.25 mmol L^? 1 h^? 1. In contrast, Fe²⁺ oxidation in near-neutral pH waters appears to be first-order with respect to Fe²⁺ concentration, although insufficient data were collected to constrain the rate law expression. Rates of Fe²⁺ oxidation in the field are dependent on temperature such that lower Fe²⁺ concentrations were measured in down-gradient waters during the day, and higher concentrations at night. Diel cycles in dissolved concentrations of Zn and other trace metals (Mn, Ni) were also noted for down-gradient waters that were net alkaline, but not in the acidic drains.The coal seams of the GFLCF and overlying Cretaceous sandstones form a perched aquifer that lies ~ 50 m above the regional water table situated in the underlying Madison Limestone. The δD and δ¹⁸O values of flooded mine waters suggest local derivation from meteoric water that has been partially evaporated in agricultural soils overlying the coal mines. The S and O isotopic composition of dissolved sulfate in the low pH mine drains is consistent with oxidation of biogenic pyrite in coal under aerated conditions. A clear distinction exists between the isotopic composition of sulfate in the acid mine waters and sulfate in the adjacent sedimentary aquifers, making it theoretically possible to determine if acid drainage from the coal mines has leaked into the underlying Madison aquifer.     

Assessing neuroprotective P-glycoprotein activity at the blood-brain barrier in killifish (Fundulus heteroclitus) using behavioural profiles

The neuroprotective role of P-glycoprotein, a multixenobiotic resistance transporter (ABCB1/MDR1), in the blood-brain barrier in fish was examined using behavioural toxicological assays. P-glycoprotein acts as cellular efflux pump to prevent substrates from accumulating in the brain, including environmental contaminants such as ivermectin, a common aquaculture pesticide and mammalian anti-parasitic drug. The behavioural toxicological assays were developed to determine the neuropathological effect of ivermectin in killifish (Fundulus heteroclitus). P-glycoprotein function and thus blood-brain barrier integrity can be compromised by chemosensitizers that inhibit transport activity. Fish treated with ivermectin and the P-glycoprotein inhibitor cyclosporin A were significantly more sensitive and succumbed more rapidly to tilting, lethargy, slowing of pectoral-fin movement and loss of haptic-reactivity compared to fish treated with ivermectin-only. P-glycoprotein inhibition is associated with significantly earlier onset and increased mortality in ivermectin-exposed fish. Our results suggest that P-glycoprotein confers resistance against ivermectin-induced behavioural neuropathology and mortality in fish. This assay provides us with a non-invasive tool to study P-glycoprotein function in the blood-brain barrier and evaluate the behavioural effects of potential environmental neurotoxins.     

Magnetic field fossilization and tail reconfiguration in Titan's plasma environment during a magnetopause passage: 3D adaptive hybrid code simulations

We present a hybrid simulation study (kinetic ions, fluid electrons) of Titan's plasma interaction during an excursion of this moon from Saturn's magnetosphere into its magnetosheath, as observed for the first time during Cassini's T32 flyby on 13 June 2007. In contrast to earlier simulations of Titan's plasma environment under non-stationary upstream conditions, our model considers a difference in the flow directions of magnetospheric and magnetosheath plasma. Two complementary scenarios are investigated, with the flow directions of the impinging magnetospheric/magnetosheath plasmas being (A) antiparallel and (B) parallel. In both cases, our simulations show that due to the drastically reduced convection speed in the slow and dense heavy ion plasma near Titan, the satellite carries a bundle of “fossilized” magnetic field lines from the magnetosphere in the magnetosheath. Furthermore, the passage through Saturn's magnetopause goes along with a disruption of Titan's pick-up tail. Although the tail is not detached from the satellite, large clouds of heavy ion plasma are stripped of its outer flank, featuring a wave-like pattern. Whereas in case (B) under parallel flow conditions there is only a small retardation of about 5 min between the passage of Titan through the magnetopause and the reconfiguration of the pick-up tail, the tail reconfiguration in the case (A) scenario is completed not until 25 min after the magnetopause passage. The lifetime of fossil fields in the moon's ionosphere is approximately 25 min, regardless of whether parallel or antiparallel flow conditions are applied.     

Density variations in the thickened crust as a function of pressure, temperature, and composition

Constraints on density as a function of pressure, temperature, and composition are crucial to understand isostatic movements during geodynamic processes. Here, we provide a systematic series of density diagrams extracted from thermodynamic calculations for a variety of crustal compositions within a wide P–T range. We quantify systematic density changes in collisional settings for relevant compositional variations and attempt to simplify the density–composition relationships. Rock densities depend strongly on pressure, temperature, and composition. Densities at some selected pressure–temperature conditions increase linearly with increasing Al₂O₃ as well as MgO/FeO contents in pelitic rocks. Al- and Fe-rich pelites yield the highest densities, which is mostly due to the formation of garnet but also depends on other minerals and changes of reactions. The effect of loading on densities is investigated, and we show that for deep burial, a meta-pelite rich in Fe and Mg yields much larger density changes than a dry basalt and that the burial of such a rock with a composition close to typical lower crust may result in significant negative buoyancy. Metamorphism of hydrous lower crust due to pressurization and heating thus leads to densification of thickened lower crust, while heating of dry crust leads to a decrease in density. Hence, water-loaded isostatic subsidence due to metamorphism of water-saturated lower crust is substantial and increases with the thickness and depth of the reacting layer, while dry compositions show much less or only transient densification and subsidence. The density change due to thermal expansion, an extensively used concept in geodynamic models, predicts uplift under the same P–T conditions and is an order of magnitude smaller than the density variation calculated from petrologically consistent diagrams.     

X-ray Spectromicroscopy of Mineral Intergrowths in the Santa Catharina Meteorite

This work describes the application of microfocus X-ray absorption spectroscopy (XAS) and X-ray photo-emission electron microscopy (XPEEM) to the study of the complex mineralogical intergrowths within the Santa Catharina meteorite. The Santa Catharina meteorite of this study (BM52283 from the meteorite collection of the Natural History Museum, London, UK) primarily comprises a taenite bulk host phase (Fe:Ni ratio = 70.9 ± 0.8%:29.1 ± 0.8%) with a set of oxide-bearing cloudy zone textured regions (Fe:Ni:O ratio = 40.4 ± 0.3%:49.0 ± 0.7%:10.6 ± 0.8% at the core and Fe:Ni:O ratio = 34.4 ± 1.5%:42.7 ± 0.6%:22.9 ± 1.8% towards the rims) and numerous schreibersite (Fe:Ni:P ratio = 38.6 ± 1.6%:38.4 ± 0.9%:23.0 ± 0.5%) inclusions. Between the schreibersite and the taenite are rims up to 50 μm across of Ni-rich kamacite (Fe:Ni ratio = 93.4 ± 0.4%:6.6 ± 0.5%). No chemical zoning or spatial variations in the Fe and Ni speciation was observed within either the schreibersite or the kamacite phases. The oxide-bearing cloudy zone textured regions mostly comprise metallic Fe–Ni alloy, predominantly tetrataenite. Within the oxide phases, the Fe is predominantly, but not entirely, tetrahedrally co-ordinated Fe³⁺ and the Ni is octahedrally co-ordinated Ni²⁺. Structural analysis supports the suggestion that non-stoichiometric Fe₂NiO₄ trevorite is the oxide phase. The trevorite:tetrataenite ratio increases at the edges of the oxide-bearing cloudy zone textured regions indicating increased oxidation at the edges of these zones. The spatial resolution of the XPEEM achieved was between 110 and 150 nm, which precluded the study of either the previously reported ∼ 10 nm precipitates of tetrataenite within the bulk taenite or any antitaenite.