Chronology building using objective identification of annual signals in trace element profiles of stalagmites

Determination of annual lamination provides important additional constraints to radiometric dates on speleothems, both for dating the duration of specific growth intervals and optimizing growth models. In the absence of visible laminae, however, speleothem age models are reliant upon curve fitting through discretely dated points and are therefore inherently more uncertain than annual chronologies from laminae. Given that the impact of seasonality on speleothems is expected to be strong enough to generate an annual pulse in trace element chemistry regardless of whether or not visible or fluorescent growth laminae are visible, we demonstrate the potential for deriving high-resolution stalagmite chronologies from non-laminated samples using annual chemical variations in stalagmites from two Alpine caves (Obir, Austria and Ernesto, NE Italy). Trace element data were obtained by ion microprobe analyses for H, P, Mg, Na, Sr and Ba and the annual signal was sought using spectral and wavelet analysis. An automated chemical peak-counting software tool was developed in MATLAB^©. It counts significant annual peaks using criteria of minimum amplitude in relation to the local standard deviation of signal variation and minimum separation between peaks determined by the thickness of the preceding layers. Verification of the tool using visibly laminated samples suggests the software is a reliable and accurate method of chronology building, with hit ratios greater than 0.93 and less than 0.75% false alarm occurrences. Used in conjunction with other dating methods such as radiocarbon, U–Th and sulphur peak dating, the automated chemical laminae chronology-building approach provides a more meaningful alternative to simple age-depth curve fitting for non-laminated samples.     

A software solution for point counting. Petrographic thin section analysis as a case study

In the field of geology, as in many other fields, a common problem is the analysis of 2D sections. An example of this is the petrographic study of rock samples, i.e., the quantification of its mineral components and the percentages of each phase present in it. Conventionally, this quantification has been determined by point counting performed on thin sections. Although point counting is very time consuming, it is of common use in several domains including geology, biology, medicine, and materials sciences, among others. Point counting in thin sections is normally conducted through mechanical or electromechanical devices attached to a microscope; such devices are very expensive, offer limited functionality, and are very time consuming. In this contribution, we introduce an interactive visualization application called Rock.AR that reduces the amount of time required to apply this technique and simplify its work flow. It provides visual tools like distortion techniques, overview + detail, and statistics to assist the technique. A comparison between this application and similar tools through users' experiences is provided. We compare the time it takes to complete a session of point counting and the tools' usability.     

Comparative study of As,Cd, Cu,Cr, Mg,Mn, Ni,Pb and Zn concentrations between sediment and water from estuary and port

The contents of As, Cd, Cu, Cr, Mg, Mn, Ni, Pb and Zn have been determined in sediment and water samples from Valle de las Garzas estuary and Port Manzanillo (Colima, Mexico) using ICP-AES. The concentrations of these elements were used for a comparative study to determine the distribution of heavy metals and to evaluate which elements reflect natural or anthropogenic backgrounds. For this purpose, seven sampling points were selected: Four of them correspond to the lagoon, and three were situated in the port. Statistical analysis of the mineral content was assessed. Initially, data comparison was assessed by statistical tests for each variable. Principal component analysis was then applied considering the influence of all variables at the same time by obtaining the distribution of samples according to their scores in the principal component space. In this way, four studies were carried out: (1) study of sediments collected during the dry season; (2) study of sediments collected during the rainy season; (3) comparative study between sediments from rainy and dry season; and (4) study of water composition collected during rainy season. From the results of the performed analyses, it can be concluded that metals distribution pattern reflected natural and anthropogenic backgrounds (e.g., sediments from the lagoon, situated at the beginning of the rain channel, presented high contents of Zn and Cu, perhaps related to anthropogenic activities or the influence of igneous sediments).     

An indurated Pleistocene coastal barrier on the inner shelf of the Gulf of Valencia (western Mediterranean): evidence for a prolonged relative sea-level stillstand

The objective of this study is to document and interpret a recently discovered carbonate-cemented coastal barrier on the inner shelf of the Gulf of Valencia (western Mediterranean Sea). The coastal barrier was identified in a high-resolution digital bathymetric model based on a cartographic survey of the study area using a multibeam echosounder. Moreover, radiocarbon dating and petrographic analyses were performed on a rock sample recovered from the seabed. The data reveal the submerged coastal barrier to be approx. 1.7 km wide and 70 km long, and incised by channels of various dimensions. Aligned more or less parallel to the modern coastline, it is interpreted as corresponding to the shoreline of a former sea-level stillstand. The barrier and lagoon system became stranded above sea level in the course of a subsequent forced regression, which also caused the incision of the river courses. Age dating of the cemented rock suggests that the fossil coastal barrier most probably formed during the prolonged Tyrrhenian (Eemian) sea-level highstand, induration taking place by carbonate cementation at the contact between freshwater and seawater (beach-rock formation). The fact that the fossil barrier is today submerged below modern sea level is explained by the sustained subsidence affecting the region.     

Effects of ocean acidification and high temperatures on the bryozoan Myriapora truncata at natural CO2 vents

There are serious concerns that ocean acidification will combine with the effects of global warming to cause major shifts in marine ecosystems, but there is a lack of field data on the combined ecological effects of these changes due to the difficulty of creating large‐scale, long‐term exposures to elevated CO₂ and temperature. Here we report the first coastal transplant experiment designed to investigate the effects of naturally acidified seawater on the rates of net calcification and dissolution of the branched calcitic bryozoan Myriapora truncata (Pallas, 1766). Colonies were transplanted to normal (pH 8.1), high (mean pH 7.66, minimum value 7.33) and extremely high CO₂ conditions (mean pH 7.43, minimum value 6.83) at gas vents off Ischia Island (Tyrrhenian Sea, Italy). The net calcification rates of live colonies and the dissolution rates of dead colonies were estimated by weighing after 45 days (May–June 2008) and after 128 days (July–October) to examine the hypothesis that high CO₂ levels affect bryozoan growth and survival differently during moderate and warm water conditions. In the first observation period, seawater temperatures ranged from 19 to 24 °C; dead M. truncata colonies dissolved at high CO₂ levels (pH 7.66), whereas live specimens maintained the same net calcification rate as those growing at normal pH. In extremely high CO₂ conditions (mean pH 7.43), the live bryozoans calcified significantly less than those at normal pH. Therefore, established colonies of M. truncata seem well able to withstand the levels of ocean acidification predicted in the next 200 years, possibly because the soft tissues protect the skeleton from an external decrease in pH. However, during the second period of observation a prolonged period of high seawater temperatures (25–28 °C) halted calcification both in controls and at high CO₂, and all transplants died when high temperatures were combined with extremely high CO₂ levels. Clearly, attempts to predict the future response of organisms to ocean acidification need to consider the effects of concurrent changes such as the Mediterranean trend for increased summer temperatures in surface waters. Although M. truncata was resilient to short‐term exposure to high levels of ocean acidification at normal temperatures, our field transplants showed that its ability to calcify at higher temperatures was compromised, adding it to the growing list of species now potentially threatened by global warming.     

Extension of the Paraná Basin to offshore Brazil: Implications for coalbed methane evaluation

Coalbed methane (CBM) is a worldwide exploration target of the petroleum industry. In Brazil, the most important coal-bearing succession is associated with the Permian Rio Bonito Formation of the Paraná Basin. The gas-prone areas are located at the southeastern margin of the Paraná Basin and possibly in the offshore region of the northern part of the Pelotas Basin. Coalfields end abruptly at the present day shoreline, a result of rifting of Gondwana and the evolution of the South Atlantic Ocean. All geologic indicators suggest that in pre-rift times the coal seams extended further eastwards, probably now lying deeply buried below the sedimentary succession of the Pelotas Basin. The present paper discusses structural, stratigraphic, seismic and aeromagenetic data that support the preservation of continental crust beneath ocean sediment. If the coal beds had similar lateral extent to known onshore coals, and coal beds extended across the projected extension of the Parana basin, and there was a conservative 5 m of cumulative coal thickness, then a potential methane volume can be estimated for this newly inferred resource. Average onshore coal gas content is 32 scf/ton (1.00 m³/ton). If this is similar in the offshore coal deposits, then the hypothetical methane volume in the offshore area could be in excess of 1.9 × 10¹² scf (56 × 10⁹ m³). Metamorphism from dikes associated with rifting are potential complicating factors in these deposits, and since no borehole reaching the deep-lying strata in the offshore area are available, this is a hypothetical gas resource with a certain level of uncertainty which should be tested in the future by drilling a deep borehole.     

Seagrass ecophysiology meets ecological genomics: are we ready?

In March 2011, the Ecophysiology and Genetics Working Groups of the European Science Foundation COST Action ES 0906, entitled Seagrass Productivity: From Genes to Ecosystem Management, organized an exploratory workshop entitled “Linking Ecophysiology and Ecogenomics in Seagrass Systems”. The goal of the workshop was to discuss how to integrate comparative gene expression studies with physiological processes such as photosynthetic performance, carbon and nitrogen utilization and environmental adaptation. The main questions discussed for integrative research related to mechanisms of carbon utilization, light requirements, temperature effects and natural variation in pH and ocean acidification. It was concluded that the seagrass research community is still in the nascent stages of linking ecophysiology with genomic responses, as carbon and nitrogen metabolism of seagrasses have not been sufficiently well studied. Likewise, genomic approaches have only been able to assign meaningful interpretations to a handful of differentially expressed genes. Nevertheless, the way forward has been established.     

The amphipod Talitrus saltator as a bioindicator of human trampling on sandy beaches

The present paper assesses the use of the supralittoral amphipod Talitrus saltator as a bioindicator of the effects of human trampling on the supralittoral sandy band. Samplings in delimited areas were carried out at sites subjected to different human impact. The results showed a strong negative correlation between the number of swimmers and the sandhopper population density, while there was no clear relationship between sandhopper abundance and the other factors considered: granulometry, compactness and organic carbon content of the sand, and trace metal contents in the sand and sandhoppers. A field test of trampling conducted in a confined space showed its direct negative effect on sandhopper survival. However, trace metal analysis confirmed the ability of T. saltator to bioaccumulate some elements (Hg, Zn, Cu, Cd). Our study demonstrates that T. saltator is a good bioindicator of human impact in the supralittoral zone of sandy shores.     

Use of immunofluorescence technique in cultured fibroblasts from Mediterranean cetaceans as new "in vitro" tool to investigate effects of environmental contaminants

The aim of the present study was to propose the immunofluorescence technique in cultured fibroblasts from Mediterranean cetaceans as a new "in vitro" tool to explore the susceptibility of these marine mammals to different xenobiotic compounds. The cell lines were cultured from integument biopsies of free-ranging and stranded cetaceans (dead within 12h). Using the indirect immunofluorescence assay, we detected endogenous proteins induced by different contaminants. Here we present the method used for qualitative and quantitative evaluation of cytochromes P450 (CYP1A1 and CYP2B) induced by some POPs (DDTs and PCBs) and emerging contaminants (PBDEs) in fibroblast cell cultures of striped dolphin (Stenella coeruleoalba) and bottlenose dolphin (Tursiops truncatus). Immunofluorescence was quantified with a specially designed Olympus macro, DetectIntZ. A major result was the possibility of using this "in vitro" assay to quantify induction of endogenous proteins.     

Seafloor distribution and last glacial to postglacial activity of mud volcanoes on the Calabrian accretionary prism,Ionian Sea

Mud volcanoes (MVs) are abundant along the eastern Mediterranean subduction zones, recording mud breccia extrusion over long timescales (10⁶ years), but to date relatively few have been recognised in the northern Ionian Sea on the Calabrian accretionary prism (CAP). In the present study, the seafloor distribution and recent activity of MVs is investigated across a 35,600 km² sector of the CAP using a regional acoustic dataset (multibeam bathymetric and backscatter imagery, integrated with subbottom profiles) locally ground-truthed by sediment cores. A total of 54 MVs are identified across water depths of 150–2,750 m using up to four geophysical criteria: distinctive morphology, high backscatter, unstratified subbottom facies and, in one case, a hydroacoustic flare. Fourteen MVs are identified from 3–4 criteria, of which five have been previously proven by cores containing mud breccia beneath up to 1.6 m of hemipelagic sediments (Madonna dello Ionio MVs 1–3, Pythagoras MV and the newly named Sartori MV), while nine others are identified for the first time (Athena, Catanzaro, Cerere, Diana, Giunone, Minerva, ‘right foot’, Venere 1 and 2). Forty other as yet unnamed MVs are inferred from 1–2 geophysical criteria (three from distinctive morphology alone). All but one possible MV lie on the inner plateau of the CAP, landwards of the Calabrian Escarpment in a zone up to 120 km wide that includes the inner pre-Messinian wedge and the fore-arc basins, where they are interpreted to record the ascent from depth of overpressured fluids that interacted with tectonic structures and with evaporitic or shale seals within the fore-arc basins. The rise of fluids may have been triggered by post-Messinian out-of-sequence tectonism that affected the entire pre-Messinian prism, but Plio-Quaternary sedimentation rates and depositional styles support the inference that significant mud volcanism has taken place only on the inner plateau. Sedimentation rates across the CAP applied to a 12 khz sonar detection depth of 225 cm imply that all MVs with backscatter signatures (50 of 54) have erupted mud breccias within the last 56 ka, and within the last 12.5 ka in the fore-arc basins. Ages of eruption estimated from the depth of cored mud breccias at five MVs, and a seismo-stratigraphic relationship at a sixth, indicate episodes at the last glacial maximum ca. 20 ka BP and during the postglacial period. Eruptive episodes within the Calabrian MV province constitute recurrent geohazards, separated by longer periods of quiescent (subdued) fluid seepage that are likely to support gas hydrate formation and chemosynthetic ecosystems.