Conventions on thermal expansion modelling of radio telescopes for geodetic and astrometric VLBI

Thermal expansion of radio telescopes has long been recognized as an effect which cannot be neglected in geodetic and astrometric VLBI data analysis if millimeter accuracy is desired. In this article, the author documents the conventions which are being set by the International VLBI Service for Geodesy and Astrometry (IVS) for a consistent modelling of this effect in its routine product generation. For the largest telescopes, the annual cycle of thermal expansion may change the height of the VLBI reference point by as much as 20 mm. However, for telescopes which are used in present-day IVS operations, the variations rather range from 4 to 6 mm.     

Sandbank occurrence on the Dutch continental shelf in the North Sea

Sandbanks, the largest of bed patterns in shallow sandy seas, pose a potential risk to shipping. They are also valuable elements of natural coastal protection, dissipating the energy of waves. In the Southern Bight of the North Sea, several sandbank areas have been reported in the literature. However, based on an objective crest–trough analysis of the bathymetry of the Dutch continental shelf, the present study shows that sandbanks are more widespread than commonly considered. These banks are relatively low, presumably explaining why they have not been documented before. This widespread occurrence of sandbanks in the North Sea is in agreement with theoretical predictions based on stability analysis techniques. The possible interference between large-scale human activity and low-amplitude open-shelf ridges implies that one should be careful not to overlook these patterns if none should appear in a preliminary (visual) assessment. The only part of the Southern Bight in which no ridges can be seen is a circular area with a diameter of about 50 km near the mouth of the river Rhine. Here, freshwater outflow affects the direction of tidal ellipses and residual flow, and suppresses the formation of open ridges.     

Pockmarks in the inner Oslofjord,Norway

Multibeam bathymetric surveys of the Inner Oslofjord, Norway have revealed a high density of pockmarks in the 179-km² inner fjord area, which contains over 500 pockmarks of varying size, typically 20–50 m in diameter and 2–10 m deep. These pockmarks have been investigated with a variety of techniques, including acoustic subbottom profiling, sedimentological and geochemical analyses of cores, remotely operated vehicle observation, and morphometry. Both the distribution and shapes of the pockmarks suggest that they are related to structures in the bedrock underlying relatively thin (<50 m) unconsolidated glacial and postglacial sediments. The data provide no direct indication of a particular mode of pockmark formation, but release of large amounts of biogenic, shallow methane seems unlikely. Several lines of evidence point to a continuous process of pockmark formation followed by inactivity, with some pockmarks recently active whereas others have been inactive for a considerable time. Some pockmarks are characterised by coarse sediment in their centres. The density, variety and easy access make this pockmark field an ideal model area for pockmark research. John S. Gray is deceased.     

A wave averaged energy equation: Comment on “global estimates of wind energy input to subinertial motions in the Ekman-Stokes layer” by Bin Liu,Kejian Wu and Changlong Guan

In a recent paper, Liu et al. (2007) formulate an expression for how surface gravity waves modify the Ekman layer energy budget. They then diagnose the effect in the world oceans using available data. This comment addresses the formulation of the energy equation that is fundamental to their study.     

Long-term bottom water warming in the north Ross Sea

We measured potential temperature, salinity, and dissolved oxygen profiles from the surface to the bottom at two locations in the north Ross Sea (65.2°S, 174.2°E and 67.2°S, 172.7°W) in December 2004. Comparison of our data with previous results from the same region reveals an increase in potential temperature and decreases in salinity and dissolved oxygen concentration in the bottom layer (deeper than 3000 m) over the past four decades. The changes were significantly different from the analytical precisions. Detailed investigation of the temperature, salinity, dissolved oxygen and σ ₃ value distributions and the bottom water flow in the north Ross Sea suggests a long-term change in water mass mixing balance. That is to say, it is speculated that the influence of cool, saline, high-oxygen bottom water (high-salinity Ross Sea Bottom Water) formed in the southwestern Ross Sea has possibly been decreased, while the influences of relatively warmer and fresher bottom water (low-salinity Ross Sea Bottom Water) and the Adélie Land Bottom Water coming from the Australia-Antarctic Basin have increased. The possible impact of global warming on ocean circulation needs much more investigation.     

Cloning and sequence analysis of a full-length cDNA of <Emphasis Type="Italic">SmPP1cb</Emphasis> encoding turbot protein phosphatase 1 beta catalytic subunit

Reversible protein phosphorylation, catalyzed by protein kinases and phosphatases, is an important and versatile mechanism by which eukaryotic cells regulate almost all the signaling processes. Protein phosphatase 1 （PP1） is the first and well-characterized member of the protein serine/threonine phosphatase family. In the present study, a full-length cDNA encoding the beta isoform of the catalytic subunit of protein phosphatase l（PPlcb）, was for the first time isolated and sequenced from the skin tissue of flatfish turbot Scophthalmus maximus, designated SmPPlcb, by the rapid amplification of cDNA ends （RACE） technique. The cDNA sequence of SmPPlcb we obtained contains a 984 bp open reading frame （ORF）, flanked by a complete 39 bp 5＇ untranslated region and 462 bp 3＇ untranslated region. The ORF encodes a putative 327 amino acid protein, and the N-terminal section of this protein is highly acidic, Met-Ala-Glu-Gly-Glu-Leu-Asp-Val-Asp, a common feature for PP1 catalytic subunit but absent in protein phosphatase 2B （PP2B）. And its calculated molecular mass is 37 193 Da and pI 5.8. Sequence analysis indicated that, SmPPlcb is extremely conserved in both amino acid and nucleotide acid levels compared with the PPlcb of other vertebrates and invertebrates, and its Kozak motif contained in the 5＇UTR around ATG start codon is GXXAXXGXXATGG, which is different from mammalian in two positions A6 and G3, indicating the possibility of different initiation of translation in turbot, and also the 3＇UTR of SmPPlcb is highly diverse in the sequence similarity and length compared with other animals, especially zebraf＇lsh. The cloning and sequencing of SmPPlcb gene lays a good foundation for the future work on the biological functions of PP1 in the flatfish turbot.     

Sequence analysis and quantitative detection of Norwalk-like viruses in cultured oysters of China

We isolated 4 Norwalk-like viruses (NLVs) contaminated oysters from 33 Chinese oysters collected from local commer-cial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase (RdRp) region of NLVs genomes with RT-PCR, the open reading frame 1 (ORF1) of the RdRp was sequenced and subjected to multiple-sequence alignment. The re-suits showed that NLVs in the four isolates belong to genogroup Ⅱ. The sequence comparison showed that the similarity between four Chinese oyster isolates were higher than 99.0%, which indicated that NLVs prevalent in close areas have high homogeneity in genome sequences. In addition, the most conserved sequences between diverse NLVs were used to design primers and TaqMan probes, then the real-time quantitative PCR assay was performed. According to the standard curve of GII NLVs, the original amounts (copies) of NLVs in positive patient's fecal isolate, positive Japanese oyster isolate, and the Chinese oyster isolate were 8.9×108, 1.25×108 and 4.7×101 respectively. The detecting limit of NLVs was 1×101 copies. This study will be helpful for routine diagnosis of NLVs pathogens in foods and thus for avoiding food poisoning in the future.     

Experiments on Surface Waves Interacting with Flexible Aquatic Vegetation

Surface wave interaction with aquatic vegetation appears to play a key role in coastal hydro-morpho-dynamics. As an example, the presence of a dense meadow at intermediate water depth is usually associated with a stable and resilient shore. Wave-meadow interactions are investigated here by means of physical modelling, with a focus on wave height distribution and hydrodynamics. The central part of a wave flume is covered by flexible artificial seagrass, composed of polyethylene leaves. This vegetation is tested in both near emergent and submerged conditions. The wave height reduction is evaluated by means of a drag coefficient defined from linear wave theory, which contains all the unknowns of the adopted methodology. The behaviour of such a coefficient is investigated as a function of a wave related Reynolds number. The influence of the flexibility of the leaves is also considered, together with a wave frequency parameter. The results show a complex behaviour with three different trends for near rigid, intermediate or highly flexible leaves. Amplitudes of the orbital velocities are investigated and show a fairly good match with the linear wave theory. On the contrary, the mean velocity along the water column appears to be modified by the seagrass for submerged leaves.     

Magnetic Disconnections at the Boundary of a Small Interplanetary Magnetic Flux Rope Associated with a Reconnection Exhaust

A local current sheet and a subsequent small interplanetary magnetic-flux rope were observed on 1 April 2003 by Wind and the Advanced Composition Explorer (ACE). A Petschek reconnection-like exhaust crossing of the local current sheet was identified using the Walén test. The Wind spacecraft re-entered the reconnection exhaust after the main exhaust encounter, and the reentry may be due to a spatial fold of the current-sheet surface itself. The absence of parallel strahls and the presence of antiparallel strahls on either side of the current sheet suggest that the magnetic-field lines before the exhaust and in the subsequent small flux rope are all open. The \(180^{\circ}\) pitch-angle strahls were clearly absent, and halo-suprathermal electron pitch-angle distributions were observed in the exhaust. This finding means that the open field lines of the magnetic-flux rope were reconnecting to the adjacent open field lines to produce U-shaped field lines disconnected from the Sun. These observations provide direct evidence that the magnetic fields of the interplanetary small magnetic-flux rope were disconnecting from the Sun through magnetic reconnection. This type of disconnected event potentially has important implications for the magnetic-flux budget of the heliosphere.     

Temperature evolution in the presence of anisotropic stresses

In a recent paper by Das et al. (Astrophys. Space Sci. 361:99, 2016) it was shown that the sign of the anisotropy parameter plays a pivotal role in determining the time of formation of the horizon of a collapsing radiating star. Spurred on by this observation we investigate the impact of the (an)isotropy featured in the (Das et al. in Astrophys. Space Sci. 361:99, 2016) collapsing model on the temperature profiles of the evolving system. We show that the temperature within the stellar interior is increased as the anisotropy in the pressure grows. Relaxational effects due to heat dissipation within the core further enhances the temperature at each interior point of the stellar distribution.