The synchronous coupling of a third-generation wave model and a two-dimensional storm surge model

The interaction of waves and currents is studied by the dynamical coupling of a third generation wave model and a two-dimensional storm surge model. The coupling process of the two models is implemented synchronously. To estimate the effects of waves on the generation of storm surges, the theory of Janssen is used. The effects of the wave radiation stress on surge levels and the effects of storm-induced currents on waves are also investigated.The coupled wave and storm surge models have been tested by hindcasting two storm events in the northern South China Sea. The use of the Simth and Banke stress relation underestimates the surges by 10%. The inclusion of the radiation stress improves the accuracy of the computed results slightly by 2%. The introduction of a wave-dependent surface drag gives a significant improvement. The storm-induced currents clearly affect the wave characteristics at the peak stage. However, as far as the prediction of wave height is concerned, it is better not to consider the wave radiation stress in the storm surge model unless this is accompanied by a wave-dependent surface drag.     

Non-equilibrium flocculation characteristics of fine-grained sediments in grid-generated turbulent flow

Results are presented from a series of settling column experiments investigating temporal variations in the flocculation characteristics of purely cohesive (kaolin clay) sediment suspensions and cohesive (kaolin) and non-cohesive (fine sand) sediment fraction mixtures. Experimental runs were conducted under controlled hydrodynamic conditions generated by a rigid array of in-phase oscillating grids. The results indicated that rapid initial floc aggregation occurred under low turbulent shear rates, with peak maximal and root-mean-square (r.m.s.) floc sizes (∼ 400 μm and ∼ 200 μm, respectively) attained after relatively short time periods, before reducing with time. By contrast, lower aggregation rates and smaller floc sizes were observed under higher shear conditions, with flocs retaining suspended in the settling column for longer time scales due to the increased turbulence. The mud input concentration displayed some correlation with maximal and r.m.s. floc sizes at higher shear rates but no correlation was apparent at low shear rates. This observed floc behaviour may be attributed to the differences in concentration gradients at high and low shear rates that affect both floc settling rate and time required for flocs to attain equilibrium size. The addition of the fine sand fraction to the kaolin clay suspension reduced both the initial floc formation (i.e. aggregation) rate and the maximal and r.m.s. floc sizes attained throughout the experiments. The reduction in maximal floc sizes appeared to be enhanced by an increase in the ratio of fine sand to kaolin clay content within the mixture.     

Hydraulic performance of vertical walls with horizontal slots used as breakwater

The hydrodynamic performance of a vertical wall with permeable lower part (horizontal slots) was experimentally and theoretically studied under normal regular waves. The effect of different wave and structural parameters was investigated e.g. the wave length, the upper part draft, and the lower part porosity. Also, the theoretical model based on an Eigen Function Expansion Method and a Least Square Technique was developed. In order to examine the validity of the theoretical model, the theoretical results were compared with the present experimental results and with the results obtained from different previous studies. Comparison between experiments and predictions showed that the theoretical model provides a good estimate of the wave transmission, reflection, and energy dissipation coefficients when the friction factor f = 5.5. In general, the tested model gives transmission coefficients less than 0.5 and reflection coefficients larger than 0.5 when the relative wave length h/L is larger than 0.3, the relative upper part draft D/h larger than 0.36, and lower part porosity ε less than 0.5. Also, the tested model dissipates about 50% of the incident wave energy when the relative wave length h/L is in the range of 0.25 to 0.35.     

Feeding ecology of mesopelagic zooplankton of the subtropical and subarctic North Pacific Ocean determined with fatty acid biomarkers

Mesopelagic zooplankton may meet their nutritional and metabolic requirements in a number of ways including consumption of sinking particles, carnivory, and vertical migration. How these feeding modes change with depth or location, however, is poorly known. We analyzed fatty acid (FA) profiles to characterize zooplankton diet and large particle (>51 μm) composition in the mesopelagic zone (base of euphotic zone ?1000 m) at two contrasting time-series sites in the subarctic (station K2) and subtropical (station ALOHA) Pacific Ocean. Total FA concentration was 15.5 times higher in zooplankton tissue at K2, largely due to FA storage by seasonal vertical migrators such as Neocalanus and Eucalanus. FA biomarkers specific to herbivory implied a higher plant-derived food source at mesotrophic K2 than at oligotrophic ALOHA. Zooplankton FA biomarkers specific to dinoflagellates and diatoms indicated that diatoms, and to a lesser extent, dinoflagellates were important food sources at K2. At ALOHA, dinoflagellate FAs were more prominent. Bacteria-specific FA biomarkers in zooplankton tissue were used as an indicator of particle feeding, and peaks were recorded at depths where known particle feeders were present at ALOHA (e.g., ostracods at 100–300 m). In contrast, depth profiles of bacterial FA were relatively constant with depth at K2. Diatom, dinoflagellate, and bacterial biomarkers were found in similar proportions in both zooplankton and particles with depth at both locations, providing additional evidence that mesopelagic zooplankton consume sinking particles. Carnivory indices were higher and increased significantly with depth at ALOHA, and exhibited distinct peaks at K2, representing an increase in dependence on other zooplankton for food in deep waters. Our results indicate that feeding ecology changes with depth as well as by location. These changes in zooplankton feeding ecology from the surface through the mesopelagic zone, and between contrasting environments, have important consequences for the quality and quantity of organic material available to deeper pelagic and benthic food webs, and for organic matter sequestration.     

Assessment of carbon- and fluorescence-based primary productivity in Ariake Bay,southwestern Japan

A comparative account of primary productivity (PP), in the characteristically turbid and highly dynamic waters of Ariake Bay, measured by ¹³C uptake and fast repetition rate fluorometer (FRRF) was conducted to ensure compatibility between the two methods. Estimates from both methods depicted strong linearity for both short-term (r² > 0.90) and daily (r² = 0.42–0.93) measurements, except in the near-surface (∼0 m) layer. ¹³C-based short-term (1 h; in situ) PP estimates showed similar magnitudes and trend with the instantaneous PP measured by FRRF concurrently. Whereas, unlike short-term measurements, the daily PP estimates from both methods showed large difference, with FRRF-based time integrated daily PP resulting in 1.09–1.82 times higher than the carbon-based daily (24 h; simulated in situ) PP. This difference between daily PP estimates was mainly due to: (1) the temporal variation of water column chlorophyll a (Chl a) because of frequent moving of water mass, and (2) the dissimilarity in ambient light field conditions between the two methods. Results revealed that considering the above two environmental factors invariable over a daylength, fairly close approximation of daily PP, compared to ¹³C-based daily PP, could be obtained from FRRF. Hence, FRRF-based daily PP can be considered as more realistic in this highly dynamic water body like Ariake Bay where water column parameters are subjected to strong temporal variation. The relationship between Chl a-specific photosynthetic rate (P^B) and the corresponding photosynthetically active radiation (PAR) in the water column (PAR–P^B relationship) was found to be linear for FRRF and curvilinear for ¹³C-based measurements in the near-surface layer, for the same intensities of incident PAR, and this is thought to be the primary basis for the higher difference in PP estimates at the near-surface layer. Considering the minor variations in FRRF-based time series of PAR–P^B relationships, a combined and/or instantaneous PAR–P^B relationship in combination with incubation Chl a and light field condition was used to obtain fairly close estimates of daily water column integrated PP from FRRF.     

Trophic organisation and predator–prey interactions among commercially exploited demersal finfishes in the coastal waters of the southeastern Arabian Sea

Trophic interactions in commercially exploited demersal finfishes in the southeastern Arabian Sea of India were studied to understand trophic organization with emphasis on ontogenic diet shifts within the marine food web. In total, the contents of 4716 stomachs were examined from which 78 prey items were identified. Crustaceans and fishes were the major prey groups to most of the fishes. Based on cluster analysis of predator feeding similarities and ontogenic diet shift within each predator, four major trophic guilds and many sub-guilds were identified. The first guild ‘detritus feeders’ included all size groups of Cynoglossus macrostomus, Pampus argenteus, Leiognathus bindus and Priacanthus hamrur. Guild two, named ‘Shrimp feeders’, was the largest guild identified and included all size groups of Rhynchobatus djiddensis and Nemipterus mesoprion, medium and large Nemipterus japonicus, P. hamrur and Grammoplites suppositus, small and medium Otolithes cuvieri and small Lactarius lactarius. Guild three, named ‘crab and squilla feeders’, consisted of few predators. The fourth trophic guild, ‘piscivores’, was mainly made up of larger size groups of all predators and all size groups of Pseudorhombus arsius and Carcharhinus limbatus. The mean diet breadth and mean trophic level showed strong correlation with ontogenic diet shift. The mean trophic level varied from 2.2 ± 0.1 in large L. bindus to 4.6 ± 0.2 in large Epinephelus diacanthus and the diet breadth from 1.4 ± 0.3 in medium P. argenteus to 8.3 ± 0.2 in medium N. japonicus. Overall, the present study showed that predators in the ecosystem have a strong feeding preference for the sergestid shrimp Acetes indicus, penaeid shrimps, epibenthic crabs and detritus.     

Effect of atmospheric CO2 and solar activity on wind regime and water column stability in the major global upwelling areas

It is not clear whether global warming will favour or reduce global ocean phytoplankton productivity in coastal areas. Moreover, the relative contributions made by natural and/or anthropogenic factors to possible changes in phytoplankton productivity are not clear. As the relationship between primary production and alongshore wind forcing is well established for the Eastern Boundary Current (EBC) ecosystems, our aim is to determine whether the changes experienced over the last five decades (1958–2007) in atmospheric CO₂ and solar activity have been able to affect the wind regime and water column stability in the most biologically productive upwelling areas of California, Canary, Humboldt and Benguela. We approached the work by statistically studying the effect of solar activity and atmospheric CO₂ on surface alongshore wind stress and on water column stability. There was an increasing trend in wind stress and water column stability in all the upwelling areas over the period studied (with the single exception of stability in the California EBC system). The analysis of detrended series evidenced significant relationships between atmospheric CO₂ concentration and wind stress and water column stability in the coastal upwelling areas investigated. In addition, wind stress and stability data were found to be consistent, with negative linear relationships between wind stress and CO₂ in most of the sites in the Benguela, Canary and Humboldt regions associated, as expected, to positive relationships when water column stability is used as regressand. The results of the present study suggest that greenhouse gas forcing, independent of its well known general increasing trend, was able to decrease wind stress intensity and increase water column stability for the period 1958 to present in most of the sites of the four Eastern Boundary Ecosystems studied, with the one exception of the California region. Conversely, the impact of solar activity appeared to be quite low compared to the greenhouse gas forcing.     

LMWOA (low molecular weight organic acid) exudation by salt marsh plants: Natural variation and response to Cu contamination

This work aimed to evaluate, in vitro, the capability of roots of two salt marsh plants to release low molecular weight organic acids (LMWOAs) and to ascertain whether Cu contamination would stimulate or not organic acids exudation. The sea rush Juncus maritimus and the sea-club rush Scirpus maritimus, both from the lower Douro river estuary (NW Portugal), were used. Plants were collected seasonally, four times a year in 2004, during low tide. After sampling, plant roots were washed for removal of adherent particles and immersed for 2 h in a solution that matched salinity (3) and pH (7.5) of the pore water from the same location to obtain plant exudates. In one of the seasons, similar experiments were carried out but spiking the solution with different amounts of Cu in order to embrace the range between 0 and 1600 nM. In the final solutions as well as in sediment pore water LMWOAs were determined by high performance liquid chromatography. Plants were able to release, in a short period of time, relatively high amounts of LMWOAs (oxalate, citrate, malate, malonate, and succinate). In the sediment pore water oxalate, succinate and acetate were also detected. Therefore, plant roots probably contributed to the presence of some of these organic compounds in pore water. Exudation differed between the plant species and also showed some seasonally variation, particularly for S. maritimus. The release of oxalate by J. maritimus increased with Cu increase in the media. However, exudation of the other LMWOAs did not seem to be stimulated by Cu contamination in the media. This fact is compatible with the existence of alternative internal mechanisms for Cu detoxification, as denoted by the fact that in media contaminated with Cu both plant species accumulated relatively high amounts (29–83%) of the initially dissolved Cu. This study expands our knowledge on the contribution of globally dominant salt marsh plants to the release of LMWOAs into the environment.