Digital preprocessing techniques for GLORIA II sonar images

Image processing techniques are discussed that correct distortions in GLORIA II side scan sonar imagery including water column offset, slant-range distortion, multiple returns, aspect ratio, speckle noise, striping, and cross-track power drop-off. The software operates within NASA's ELAS image processing system and is applied to the original 12-bit GLORIA II data. Procedures are discussed for generating large scale mosaics and three-dimensional overlays with sea floor bathymetry. The results are shown in four sonographs acquired off the southern coast of California.     

Phytoplankton production in two east coast estuaries: Photosynthesis-light functions and patterns of carbon assimilation in Chesapeake and Delaware Bays

Chesapeake Bay is a large and productive estuary that has received close scrutiny in recent years because of indications that its water quality and biota have been damaged by man's activities. Data on primary production for the estuary as a whole, however, are surprisingly sparse. We describe here the distribution of photosynthetic carbon assimilation by phytoplankton in Chesapeake Bay, and relate productivity patterns to hydrographic characteristics of the estuary. Between March 1982 and April 1983, a series of four cruises was conducted on Chesapeake Bay, and two cruises on the urbanized Delaware Bay for comparison. The upper Chesapeake and Delaware were highly turbid with high concentrations of suspended particulate matter and dissolved inorganic nutrients. Low chlorophyll concentrations were usually found in these areas of high turbidity, despite the abundance of nutrients, suggesting light limitation. Application of Wofsy's (1983) model of phytoplanton growth confirmed this suggestion. Chlorophyll and productivity maxima usually occurred seaward of the turbidity maxima where light penetration increased and suffient nutrients were present to support active phytoplankton growth. Further seaward of the chlorophyll maxima in the Chesapeake, the photic zone depth increased, concentrations of nutrients decreased, and phytoplankton biomass decreased, suggesting that nutrient availability, rather than light, controlled phytoplankton growth in the lower portion of the estuary. In contrast to the Chesapeake, Delaware Bay was more turbid, had generally higher nutrient concentrations, and was lower in phytoplankton productivity. The chlorophyll maxima and region of rapid phytoplankton growth occurred further toward the lower estuary and shelf regions in Delaware Bay because the high turbidity extended further seaward. Nutrients were never depleted at the shelf end of the estuary sufficiently to retard phytoplankton growth. Photosynthesis-irradiance (P-I) curves from simulated in situ and constant intensity incubations showed a strong correlation of the light-limited slope (a^B) with the light-saturated rate ( ) on each cruise. Spatial variations in corresponded to patterns of phytoplankton abundance, as did integral production (PP) and carbon-based growth rates (μ_C, μ_m), and photosynthetic parameters varied significantly with temperature.     

Trophic accumulation and depuration of mercury by blue crabs (Callinectes sapidus) and pink shrimp (Penaeus duorarum)

Mercury concentrations in blue crabs (Callinectes sapidus) collected from an area of mercury-contaminated sediments in Lavaca Bay, TX, USA, are more than an order of magnitude greater than concentrations in penaeid shrimp from the same area. Laboratory feeding experiments using mercury-contaminated fish as food showed that both blue crabs and pink shrimp (Penaeus duorarum) could accumulate mercury concentrations comparable to those in their food in 28 days. Calculated mercury assimilation efficiencies averaged 76% for blue crabs and 72% for pink shrimp. Significant depuration of mercury by blue crabs was not observed during a subsequent 28-day period, but pink shrimp lost mercury at a rate of about 0.012 day-1. Model calculations predict biomagnification factors of mercury of about two to three at steady state for both species. The large difference in observed concentrations of mercury in field-collected blue crabs and penaeid shrimp does not result from differences in efficiency of mercury assimilation from their food or from differences in excretion rates. It is more likely the result of differences in residence times in the contaminated area and of differences in feeding habits.     

Particulate and dissolved amino acids in the lower Mississippi and Pearl Rivers (USA)

In this study, we present seasonal changes (monthly samples from September 2001 to August 2003) in the abundance and composition of dissolved and particulate amino acids, at one station in the lower Mississippi and Pearl Rivers (LA, MS: USA). Spatial changes over a 4-day transmit from river km 390 to river mouth (Head of Passes, LA) in the Mississippi River, and a two-day downstream sampling from Jackson (MS) to Stennis Space Center (MS) were also determined. Temporal data in the lower Mississippi River showed significantly lower concentrations of dissolved combined amino acids (DCAA, 0.8 to 2.2 μM) and dissolved amino acids in high molecular weight fraction (HMW DAA, 0.2–0.4 μM) than in the Pearl River (DCAA, 1.4–4.3 μM; HMW DAA, 0.4–1.4 μM). Dissolved free amino acids (DFAA) were significantly lower than DCAA in both rivers, and displayed minimal seasonal variability. DCAA, HMW DAA, and particulate amino acids (PAA) were generally higher during high-flow periods, which may have suggested dominance in terrestrial sources. Carbon-normalized yield of PAA (%C-PAA) was generally higher during low-flow conditions and positively correlated with chlorophyll-a (chl-a), reflective of in situ sources. Downstream variability in the lower Mississippi River showed stable DCAA concentrations, a decline in PAA (from 1.06 to 0.43 μM), and a gradual increase in mole percent of non-protein amino acids (%NPAA). This likely reflected bacterial degradation of phytoplankton biomass during falling discharge. Nitrogen-normalized yield of PAA (%N-PAA) was inversely correlated with PAA (R = − 0.7, n = 48), indicative of short-term sedimentation and resuspension events. Conversely, downstream decreases in DCAA and middle-reach peaks of PAA and %N-PAA in the Pearl River, likely resulted from photochemical degradation of DOM as well as algal production during base-flow conditions. The comparisons in abundance and composition of DAA and PAA in these different river systems provides important information on in situ nitrogen and carbon cycling as related to riverine inputs of organic matter to coastal ocean.     

The dynamic behaviour of a river-dominated tidal inlet, River Murray, Australia

Australia's largest river, the River Murray, discharges to the southern ocean through a coastal lagoon and river-dominated tidal inlet. Increased water extractions upstream for irrigation have led to significantly reduced flows at the mouth and, as a result, the area is undergoing rapid change, particularly with regard to the rate at which sediment is being transported into the lagoon. Based on detailed and accurate bathymetric surveys it has been possible to estimate that the rate of lagoon in-filling is of the order of 100,000 m³ per year for the period June 2000 to May 2003, although the actual rate shows significant year to year variability. Dredging of the lagoon commenced in 2000 in an attempt to reverse the trend.In an effort to understand the behaviour of the inlet a one-dimensional numerical model of the inlet has been developed. The model extends the original of van de Kreeke by including a dynamic inlet throat area based on predicted river flows and a sediment transport module to predict the resulting net sediment transport. Comparisons with water level data collected on both the ocean and lagoon sides of the mouth have shown that the model is able to predict the attenuation and lag of the tidal signal reasonably well. The sediment transport model was based on predicted sediment concentrations in the surf zone and was found to predict the rate of sediment in-filling to an acceptable level of accuracy. It is envisaged that the model will be a useful management tool, especially since it is possible to manipulate river discharges to the mouth.     

Interannual and decadal variability in zooplankton communities of the southeast Bering Sea shelf

The southeastern Bering Sea shelf ecosystem is an important fishing ground for fin- and shellfish, and is the summer foraging grounds for many planktivorous seabirds and marine mammals. In 1997 and 1998, Northern Hemisphere climate anomalies affected the physical and biological environment of the southeastern Bering Sea shelf. The resulting anomalous conditions provided a valuable opportunity to examine how longer-term climate change might affect this productive ecosystem. We compared historical and recent zooplankton biomass and species composition data for the southeastern Bering Sea shelf to examine whether or not there was a response to the atmosphere–ocean–ice anomalies of 1997 and 1998. Summer zooplankton biomass (1954–1994) over the southeastern shelf did not exhibit a decline as previously reported for oceanic stations. In addition, zooplankton biomass in 1997 and 1998 was not appreciably different from other years in the time series. Spring concentrations of numerically abundant copepods (Acartia spp., Calanus marshallae, and Pseudocalanus spp.), however, were significantly higher during 1994–1998 than 1980–1981; spring concentrations of Metridia pacifica and Neocalanus spp. were not consistently different between the two time periods. Neocalanus spp. was the only taxon to have consistent differences in stage composition between the two time periods—CV copepodites were much more prevalent in May of the 1990s than early 1980s. Since relatively high zooplankton concentrations were observed prior to 1997, we do not attribute the high concentrations observed in the summers of 1997 and 1998 directly to the acute climate anomalies. With the present data it is not possible to distinguish between increased production (control from below) and decreased predation (control from above) to explain the recent increase in concentrations of the species examined.     

Side-scan and acoustic subbottom characterization of the sea floor near the Dry Tortugas, Florida

 Between 2 and 6 February, 1995, a 25 km² area at the Dry Tortugas (Florida Keys) was surveyed with a 100 kHz side-scan sonar system and 3.5-kHz subbottom profiler. The side-scan system revealed a pattern of alternating high and low backscatter. The subbottom profiler showed areas with no acoustic penetration between sediment troughs. The combination of both methods allowed delineation of the boundaries in high-backscatter regions, and sediment samples allowed correlations between high backscatter and coarser-grained sediments.     

Cross-shelf exchange in a model of the Ross Sea circulation and biogeochemistry

Transport of warm, nutrient-rich Circumpolar Deep Water (CDW) onto Antarctic continental shelves and coastal seas has important effects on physical and biological processes. The present study investigates the locations of this transport and its dynamics in the Ross Sea with a high-resolution three-dimensional numerical model. The model circulation is forced by daily wind stress along with heat and salt fluxes calculated from atmospheric climatologies by bulk formulae. All surface fluxes are modified by an imposed climatological ice cover. Waters under the Ross Ice Shelf are not included explicitly, but their effect on temperature and salinity is imposed in a buffer zone at the southern end of the model domain. A simple nutrient uptake is calculated based on the climatological chlorophyll distribution and Monod uptake kinetics.Model circulation is strongly affected by bottom topography, due to weak stratification, and agrees with schematics of the general flow and long-term current measurements except near the southern boundary. The sea-surface temperature is similar to satellite estimates except that the warmest simulated temperatures are slightly higher than observations. There is a significant correlation between the curvature of the shelf break and the transport across the shelf break. A momentum term balance shows that momentum advection helps to force flow across the shelf break in specific locations due to the curvature of the bathymetry (that is, the isobaths curve in front of the flow). For the model to create a strong intrusion of CDW onto the shelf, it appears two mechanisms are necessary. First, CDW is driven onto the shelf at least partially due to momentum advection and the curvature of the shelf break; then, the general circulation on the shelf takes the CDW into the interior.