Modified mild slope equation and open boundary conditions

A numerical model to compute wave field is developed. It is based on the Berkhoff diffraction-refraction equation, in which an energy dissipation term is added, to take into account the breaking and the bottom friction phenomena. The energy dissipation function, by breaking and by bottom friction, is introduced in the Berkhoff equation to obtain a new equation of propagation.The resolution is done with the hybrid finite element method, where lagrangians elements are used.     

Simulating a heavy metal spill under estuarine conditions: Effects on the clam Scrobicularia plana

We describe the effect of heavy metals Zn, Cd, Pb and Cu on the induction of methallothioneins on the clam Scrobicularia plana along a salinity gradient simulated under laboratory conditions. The clams were exposed to constant heavy metal concentrations in a dynamic estuary simulator during a 15-day assay to investigate possible induction of metal-binding proteins in them. The concentration of heavy metals in water was analysed. Clams were analysed for methallothionein concentrations. The speciation of Zn, Cd, Pb and Cu along the salinity gradient was modelled. Zn showed the highest concentrations and its prevalent species was the free ion. Intersite differences have been observed in methallothionein concentration and related to the salinity gradient. It seems that synthesis of methallothioneins is the result of physiological forces acting in concert with the changes in the chemical speciation of metals, owing to the trace metals uptake is controlled by means of an interaction of physiology and physicochemistry.     

Probing molecular-level transformations of dissolved organic matter: insights on photochemical degradation and protozoan modification of DOM from electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Molecular-level characterization of natural organic matter (NOM) has been elusive due to the inherent complexity of natural organic mixtures and to the fact that individual components are often polar and macromolecular. Electrospray ionization (ESI) is a “soft” ionization technique that ionizes polar compounds from aqueous solution prior to injection into a mass spectrometer. The highest resolution and mass accuracy of compounds within NOM have been achieved when ESI is combined with an ultrahigh-resolution mass spectrometer such as the Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS). With this technique, individual molecules within a variety of natural organic mixtures can be detected and their elemental composition can be determined. At low mass-to-charge (m/z) ratio, the resolution is high enough to assign exact molecular formulas allowing specific components of these mixtures to be identified. In addition to molecular identification, we can now use ESI FT-ICR MS to examine molecular-level changes in different organic mixtures as a function of relevant geo-processes, such as microbial alterations and photochemistry. Here we present the results from the application of ESI FT-ICR MS to two geochemical questions: (1) the effect of photoirradiation on the molecular composition of fulvic acids and (2) the role of protozoan grazers in the modification of DOM in aquatic systems.     

Impact of urban stormwater runoff on estuarine environmental quality

Urban stormwater runoff could contribute to the deterioration of water quality of a receiving water body. In this research, field studies and laboratory experiments were conducted to assess the microbial contamination resulting from urban stormwater runoff into the Lake Pontchartrain estuary. Fecal coliform, Escherichia coli and enterococci were used as indicator organisms. The specific objectives of the research were to examine the distribution of the indicator organisms in different environmental elements (water column, suspended particles and sediment) and to further investigate the mechanisms related to their fate. Results of the research indicated satisfactory water quality at the study sites during dry weather periods. However, a significant increase was observed in the concentrations of the indicator organisms in the water columns and sediment at specific study sites following a given stormwater event. Three to seven days were needed for the elevated indicator organisms to return back to their background levels in the water column and sediment, respectively. The mechanism of sedimentation contributed to a reduction in the microbial concentration in the water column, as the indicator organisms were found to attach to the suspended particles in the stormwater. The percentage of fecal coliform, E. coli and enterococci attached to the suspended particles was found to be within the range of 9.8–27.5%, 21.8–30.4%, and 8.4–11.5% of the total indicator organisms in the stormwater loaded into the estuary, respectively. About 75–80% of the total indicator organisms remained free-floating for some distance in the water column before dying off.     

Green water overtopping analyzed with a SPH model

Wave overtopping on the decks of offshore platforms and ships can cause severe damage due to the high forces generated by the water. This phenomenon is analyzed within the framework of the Smoothed Particle Hydrodynamics (SPH) method. The presence of a fixed horizontal deck above the mean water level modifies strongly the wave kinematics. In particular, the flow in the wave crest is split into two, showing a different behavior above and below the deck. Numerical results generated by the SPH method are compared to laboratory experiments. The formation of a jet in the rear of the deck after overtopping is observed under extreme conditions.     

Meio-epifaunal wood colonization in the vicinity of methane seeps

In deep-sea environments, plant remains of several origins are found, including branches, twigs, leaves, and wood pieces, among others. As most of the deep-sea bottoms are oligotrophic and nutrient-limited, plant remains provide an oasis of localized organic enrichment and a substrate for colonization. Sunken wood was suggested to play an important evolutionary role in the diversification of chemosynthetic ecosystems, possibly representing stepping stones for the colonization between vent and seep ecosystems. In order to understand colonization processes of the Pacific Costa Rican meio-epifaunal assemblages associated with sunken wood, a field experiment was conducted on Mound 12 (8°55.778′N, 84°18.730′W) at ~1,000 m water depth. Woodblocks were placed in four different habitats (Mussel beds, tube worms, near mussel beds, rubble bottoms), and different local environmental conditions (seepage-active and seepage-inactive sites). Seven experimental Douglas fir woodblocks (each 1,047 cm² in surface area) were deployed from the R/V Atlantis using the manned submersible Alvin in February 2009 and recovered after 10.5 months in January 2010. Sample processing and analyses led to a data set of abundance (total 9,951 individuals) and spatial distribution of nine meio-epifaunal higher taxa/groups. Meio-epifaunal densities on individual woodblocks ranged from 3 to 26 ind.10 cm². Copepods accounted for the highest abundances (75.1%), followed by nauplii larvae (11.7%) and nematodes (9.8%). The maximum number of individuals (26.3 ind.10 cm⁻²) was found in blocks placed in seepage-inactive areas (near active mussel beds) in contrast to 2.9 ind.10 cm⁻² in active areas (within a mussel bed). A hierarchical cluster analysis grouped blocks according to seepage activity and not to habitat, but tests of similarity showed no significant differences in higher taxon composition and abundances, probably owing either to substrate homogeneity or low sample size. Copepods were the most abundant representatives, suggesting that this group is one of the most successful in colonizing in the early stage of succession, in this case while hardwood substrates are not yet decomposed or bored by bivalves.     

Morphodynamics of a bar-trough surf zone

A field study was made of the distinguishing morphodynamic processes operating in a surf zone which perennially exhibits accentuated bar-trough topography (the “longshore-bar-trough” and “rhytmic-bar-and-beach” states as described by Wright and Short, 1984). Characteristic features of the morphology include a shallow bar with a steep shoreward face, a deep trough, and a steep beach face. This morphology, which is favored by moderate breaker heights and small tidal ranges, strongly controls the coupled suite of hydrodynamic processes. In contrast to fully dissipative surf zones, the bar-trough surf zone is not at all saturated and oscillations at incident wave frequency remain dominant from the break point to the subaerial beach. The degree of incident wave groupiness does not change appreciably across the surf zone. Infragravity standing waves which, in dissipative surf zones, dominate the inshore energy, remain energetically secondary and occur at higher frequencies in the bar trough surf zone. Analyses of the field data combined with numerical simulations of leaky mode and edge wave nodal—antinodal positions over observed surf-zone profiles, indicate that the frequencies which prevail are favored by the resonant condition of antinodes over the bar and nodes in the trough. Standing waves which would have nodes over the bar are suppressed. Sediment resuspension in the surf zone appears to be largely attributable to the incident waves which are the main source of bed shear stress. In addition, the extra near-bottom eddy viscosity provided by the reformed, non-breaking waves traversing the trough significantly affects the vertical velocity profile of the longshore current. Whereas the bar is highly mobile in terms of onshore—offshore migration rates, the beach face and inner regions of the trough are remarkably stable over time.     

Extension of the Narmada — Son lineament on the continental margin off Saurashtra,Western India as obtained from magnetic measurements

Magnetic total intensity values and bathymetric data collected on the continental margin off Saurashtra were, used to prepare magnetic anomalies and bathymetric contour maps. The magnetic anomalies are considered to have been caused by the Deccan Trap flood basalts which underlie the Tertiary sediments. Interpretation of the magnetic data using two-dimensional modelling method suggests that the magnetic basement is block faulted and deepens in steps from less than 1.0 km in the north to about 8.0 km towards the southern portion of the study area. The WNW-ESE trending faults identified in the present study extend across the Saurashtra continental margin between Porbandar and Veraval and appear to represent a major linear tectonic feature. The relationship of these fault lineaments with the regional tectonic framework have been discussed to indicate that they conform better as the northern boundary faults of the Narmada rift graben on the continental margin off Saurashtra.