A comparison of genetic structure in two low-dispersal crabs from the Wild Coast,South Africa

The Wild Coast in south-eastern South Africa is strongly influenced by the warm, southward-flowing Agulhas Current. This current has a significant impact on dispersal in the coastal biota of the region, and facilitates high levels of connectivity among populations. However, it is not known how the region's high-velocity hydrology affects genetic population structure in endemic estuarine species, populations of which are frequently isolated from the sea. Here, we compared genetic structure in two estuarine crabs of the family Hymenosomatidae. Both are presumed to have low dispersal potential, but they differ in terms of their life histories. Hymenosoma longicrure has abbreviated larval development and can complete its entire life cycle within estuaries, whereas Neorhynchoplax bovis is a direct developer that lacks planktonic larvae. Using DNA sequence data from the mitochondrial COI gene and the intron of the nuclear ANT gene, we found that levels of genetic structure differ considerably between the species. Depending on the genetic marker used, H. longicrure is genetically homogeneous (COI) or displays low levels of genetic structure and minor evidence of recruitment near natal sites (ANT). In contrast, connectivity in N. bovis is much lower, as this species has a unique combination of alleles at each site, indicating that recruitment is mostly local. These results support previous findings suggesting that even a short larval dispersal phase is sufficient to maintain high levels of connectivity and prevent genetic divergence among populations.     

Fast reconnaissance of carbonate dissolution based on the size distribution of calcareous ooze on Walvis Ridge, SE Atlantic Ocean

We present a new index of carbonate fragmentation based on the size distribution of bulk sediments in core MD962094 from Walvis Ridge (SE Atlantic Ocean). The carbonate fragmentation index is constructed by taking a ratio of the two coarsest fractions in the grain size distributions of the bulk calcareous ooze. The coarsest two fractions (25–90 μm and >90 μm) of the bulk sediments consist primarily of complete shells and fragments of adult foraminifera shells, and juvenile foraminifera shells and fragments, respectively. The ratio of the proportions of the two fractions is interpreted as a measure of fragmentation of the foraminifera shells caused by carbonate dissolution. Downcore changes in our carbonate fragmentation index compare very well with those in the coarse-carbonate fragmentation index in sediments from a nearby core on Walvis Ridge. The latter commonly used fragmentation index is defined as a ratio of foraminifera fragments over whole foraminifera in the >150-μm fraction as seen with a light microscope. Fragmentation is relatively high during glacial stages and relatively low during interglacial stages during the last 300 kyr, caused by the combined effect of wind-driven upwelling of corrosive water and increased production of organic matter, decreasing the preservation potential of carbonates both during and after deposition. The carbonate fragmentation index we present here provides a precise and fast method to establish a downcore fragmentation record. It can be applied to bulk sediments that are carbonate-rich (CaCO₃>68%) and to all other deep-marine sediments of which the grain size distribution of the carbonate-free fraction is available.     

Crabs,leeches and trypanosomes: an unholy trinity?

The red king crab Paralithodes camtschaticus was deliberately introduced to the Barents Sea in the 1960s and 1970s from its native area in the North Pacific. The carapace of these crabs is a favoured substrate for the leech Johanssonia arctica to deposit its eggs, and the leech is a vector for a trypanosome blood parasite of marine fish, including cod. We examined cod for trypanosome infections during annual cruises along the coast of Finnmark in North Norway over three successive years from stations along a gradient of over 1000 km. In every year the level of trypanosome infection in cod was significantly highest in the area with the greatest density of king crabs. We propose the hypothesis that the burgeoning population of red king crabs in this area is indirectly responsible for increased transmission of trypanosomes to cod by promoting an increase in the population of the leech vector.     

Characteristics of turbulent structures in the unstable atmospheric surface layer

An atmospheric surface-layer (ASL) experiment conducted at a meteorological site in the Oostelijk-Flevoland polder of the Netherlands is described. Turbulent fluctuations of wind velocity, air temperature and static pressure were measured, using three 10 m towers.Simultaneous turbulent signals at several heights on the towers were used to investigate the properties of the turbulent structures which contribute most significantly to the turbulent vertical transports in the unstable ASL. These turbulent structures produce between 30 and 50% of the mean turbulent vertical transport of horizontal alongwind momentum and they contribute to between 40 and 50% of the mean turbulent vertical heat transport; in both cases this occurs during 15 to 20% of the total observation time.The translation speed of the turbulent structures equals the wind speed averaged over the depth of the ASL, which scales on the surface friction velocity. The inclination angle of the temperature interface at the upstream edge of the turbulent structures to the surface is significantly smaller than that of the internal shear layer, which is associated with the temperature interface. The turbulent structures in the unstable ASL are determined by a large-scale temperature field: Convective motions, which encompass the whole depth of the planetary boundary layer (PBL), penetrate into the ASL. The curvature of the vertical profile of mean horizontal alongwind velocity forces the alignment of the convective cells in the flow direction (Kuettner, 1971), which have an average length of several hundreds of metres and an average width of a few tens of metres. This mechanism leads to the formation of turbulent structures, which extend throughout the depth of the ASL.     

Multichannel rivers: their definition and classification

The etymology and historic usage of such terms as ‘anabranch’, ‘anastamose’ and ‘braided’ within river science are reviewed. Despite several decades of modern research to define river channel typologies inclusive of single channels and multiple channel networks, typologies remain ill‐conditioned and consequently ill‐defined. Conventionally employed quantitative planform characteristics of river networks possibly cannot be used alone to define channel types, yet the planform remains a central part of all modern classification schemes, supplemented by sedimentological and other qualitative channel characteristics. Planform characteristics largely have been defined using non‐standardized metrics describing individual network components, such as link lengths, braiding intensity and bifurcation angles, which often fail to separate visually‐different networks of channels. We find that existing typologies remain pragmatically utilitarian rather than fundamentally physics‐based and too often fail to discriminate between two distinctive and important processes integral to new channel initiation and flow‐splitting: (i) in‐channel bar accretion, and (ii) channel avulsion and floodplain excision. It is suggested that, first, if channel planform is to remain central to river typologies, then more rigorous quantitative approaches to the analysis of extended integral channel networks at extended reach scales (rather than network components) are required to correctly determine whether ‘visually‐different’ channel patterns can be discriminated consistently; and, second, if such visually‐different styles do in fact differ in their governing processes of formation and maintenance. A significant question is why do so many seemingly equilibrium network geometries possess a large number of anabranches in excess of predictions from theoretical considerations? The key research frontier with respect to initiating and maintaining multichannel networks remains the understanding and discrimination of accretionary‐bar flow splitting versus avulsive processes. Existing and new knowledge on flow splitting processes needs to be better integrated into channel typologies. Copyright © 2013 John Wiley & Sons, Ltd.     

National Virtual Core Library HyLogging data and Ni–Co laterites: a mineralogical model for resource exploration,extraction and remediation

The National Virtual Core Library (NVCL) HyLogging core-scanning system generates mineralogical information from visible, short-wave infrared and thermal infrared spectroscopic data. Currently, HyLogging data are freely available for more than 1500 drill holes via the AuScope Discovery Portal and various Geological Survey websites. With any new technology, there is commonly a lag between provision and take-up by users that can be aided by the publication of case studies in the scientific literature. This paper uses the Mt Davies nickel–cobalt (Ni–Co) laterite deposits, located in northwest South Australia, as a case study to assess the accessibility and representation of HyLogger data and provides an example of its application to all aspects of resource mining: exploration, extraction and processing, and remediation. In this study, we combine HyLogger-derived scalars indicating Fe-oxide and clay mineralogy with historical geological logs and assay data. In general, background Ni grades (<0.1 wt%) are linked to the presence of montmorillonite + hematite ± goethite, moderate grades (0.1–1.0 wt%) are associated with goethite ± nontronite ± saponite ± kaolinite ± montmorillonite, and higher grades (1.0–2.0 wt%) are coincident with goethite and minimal clay alteration, suggesting that goethite hosts Ni mineralisation. Gibbsite, where it occurs, is found immediately above zones of moderate to high Ni grades and may be an important proximal indicator mineral of nickeliferous laterite. Such a case study serves to suggest opportunities for further data modelling and search and query functionality that could facilitate increased use of this important digital geoscience data resource by the Australian minerals industry for all aspects of resource exploitation: exploration, extraction, processing, and environmental remediation.     

Natural and anthropogenic forcing of Holocene lake ecosystem development at Lake Uddelermeer (The Netherlands)

Lake Uddelermeer (The Netherlands) is characterized by turbid conditions and annual blooms of toxic cyanobacteria, which are supposed to be the result of increased agricultural activity in the twentieth century AD. We applied a combination of classic palaeoecological proxies and novel geochemical proxies to the Holocene sediment record of Lake Uddelermeer (The Netherlands) in order to reconstruct the natural variability of the lake ecosystem and to identify the drivers of the change to the turbid conditions that currently characterize this lake. We show that the lake ecosystem was characterized by a mix of aquatic macrophytes and abundant phytoplankton between 11,500 and 6000 cal year BP. A transition to a lake ecosystem with clear-water conditions and relatively high abundances of ‘isoetids’ coincides with the first signs of human impact on the landscape around Lake Uddelermeer during the Early Neolithic (ca. 6000 cal year BP). An abrupt and dramatic ecosystem shift can be seen at ca. 1030 cal year BP when increases in the abundance of algal microfossils and concentrations of sedimentary pigments indicate a transition to a turbid phytoplankton-dominated state. Finally, a strong increase in concentrations of plant and faecal biomarkers is observed around 1950 AD. Canonical Correspondence Analysis suggests that reconstructed lake ecosystem changes are best explained by environmental drivers that show long-term gradual changes (sediment age, water depth). These combined results document the long-term anthropogenic impact on the ecosystem of Lake Uddelermeer and provide evidence for pre-Industrial Era signs of eutrophication.     

High-resolution last deglaciation record from the Congo fan reveals significance of mangrove pollen and biomarkers as indicators of shelf transgression

High abundances of mangrove pollen have been associated with transgressive cycles on tropical margins, but the detailed relations between systems tracts and the taphonomy of the pollen are unclear. We report here the occurrence and high abundance of Rhizophora pollen, in association with taraxerol, a Rhizophora-sourced biomarker, from a high-resolution Congo fan core covering the last deglaciation. An age model based on ¹⁴C dates enables the temporal changes in taraxerol content and the percentage frequencies and flux (pollen grains (pg) cm⁻² (10³ yr)⁻¹) of mangrove pollen to be compared quantitatively with the lateral rate of transgression across the flooding surface (derived from glacio-hydro-isostatic model output and the bathymetry of the margin). Rhizophora pollen concentrations and taraxerol content of the sediment are very strongly positively correlated with the lateral rate of transgression and indicate, independently of any sequence stratigraphic context, that mangrove pollen spikes are associated with the transgressive systems tract rather than the highstand systems tract or maximum flooding surface. Lower-resolution longer-term records from this margin indicate an association between taraxerol concentrations and transgressive rather than regressive phases. The flux of these materials to the Congo fan is interpreted as a function of the erosion of flooded mangrove swamp on the shelf and, less importantly, changing extent of mangrove habitat, during sea-level rise. Congo River palaeoflood events also result in reworking of mangrove pollen and supply to the fan, but this mechanism is subdominant. Rhizophora pollen has been underestimated in many palynological studies undertaken on cores from the African margin because of inappropriate sieve mesh size used during laboratory preparation.