Simple determination of dimethylsulfide (DMS) and dimethylsulfoniopropionate (DMSP) using solid-phase microextraction and gas chromatography-mass spectrometry

Solid-phase microextraction (SPME) is a simple, sensitive and less destructive method for the determination of dimethylsulfide (DMS) in seawater. Combined with detection by gas chromatography-mass spectrometry (GC-MS), the method had sufficient sensitivity (minimum detectable concentration of DMS was 0.05 nM), and practical levels of reproducibility (relative standard deviation ≤7%) and linearity (r ² > 0.995) over a wide concentration range (0.5 to 910 nM). The protocol developed was applied to a Sagami Bay water sample to determine concentrations of DMS and DMSP, and in situ DMSP-lyase activity.     

Geodynamics of the deep sedimentary basin of the Caspian Sea region: paragenetic correlation of seismicity and mud volcanism

In this paper we analyze seismic regime and earthquake depth distribution and correlation of seismicity and mud volcanism in the Azerbaijan and the Caspian Sea region. For the present region we have calculated accurate source locations, seismic activity, earthquake repetition and released earthquake energy parameters. It is shown that the active tectonic processes in the region are concentrated within the thick sedimentary cover that we consider as a general source of contemporary stress and a main structural element responsible for the origin of regional earthquakes. The correlation of seismicity and mud volcanism is of paragenetic character.     

The fate of dumped sediments monitored by a high-resolution multibeam echosounder system,Weser Estuary,German Bight

With the development of high-resolution multibeam echosounder systems (MBES) for surveying shallow-water areas a new tool is available to monitor rapid changes in seabed morphology as, e.g., caused by the dumping of dredge spoil in coastal waters. In this study, four data sets of repeated bathymetric surveys with a MBES were processed and analyzed. The data were collected in a 1.94-km² dumping site in the outer Weser Estuary (German Bight). Between June and December 1998, 2.6 million m³ of dredged sediment were deposited there. The bathymetric maps generated in the course of this study reveal features such as subaqueous dunes, scour holes, and mounds of dumped dredge spoil. The mean water depth decreased by about 1 m during the dumping period. Furthermore, difference grids showing changes in sediment volume allowed a calculation of the sediment budget for the monitored area. After a time period of only 5 months, 0.5 million m³ of the originally dumped 2.6 million m³ of dredge spoil had already been removed from the dumping site.     

Improving strategies with constraints regarding non-Gaussian statistics in a three-dimensional variational assimilation method

We assess validity of a Gaussian error assumption, the basic assumption in data assimilation theory, and propose two kinds of constraints regarding non-Gaussian statistics. In the mixed water region (MWR) off the east coast of Japan exhibiting complicated frontal structures, a probability density function (PDF) of subsurface temperature shows double peaks corresponding to the Kuroshio and Oyashio waters. The complicated frontal structures characterized by the temperature PDF sometimes cause large innovations, bringing about a non-Gaussianity of errors. It is also revealed that assimilated results with a standard three-dimensional variational (3DVAR) scheme have some issues in MWR, arising from the non-Gaussianity of errors. The Oyashio water sometimes becomes unrealistically cold. The double peaks seen in the observed temperature PDF are too smoothed. To improve the assimilated field in MWR, we introduce two kinds of constraints, J _c1 and J _c2, which model the observed temperature PDF. The constraint J _c1 prevents the unrealistically cold Oyashio water, and J _c2 intends to reproduce the double peaks. The assimilated fields are significantly improved by using these constraints. The constraint J _c1 effectively reduces the unrealistically cold Oyashio water. The double peaks in the observed temperature PDF are successfully reproduced by J _c2. In addition, not only subsurface temperature but also whole level temperature and salinity (T–S) fields are improved by adopting J _c1 and J _c2 to a multivariate 3DVAR scheme with vertical coupled T–S empirical orthogonal function modes.     

Seasonal variation of eddy shedding from the Kuroshio intrusion in the Luzon Strait

Altimeter data and output from the HYbrid Coordinate Ocean Model global assimilation run are used to study the seasonal variation of eddy shedding from the Kuroshio intrusion in the Luzon Strait. The results suggest that most eddy shedding events occur from December through March, and no eddy shedding event occurs in June, September, or October. About a month before eddy shedding, the Kuroshio intrusion extends into the South China Sea and a closed anticyclonic eddy appears inside the Kuroshio loop which then detaches from the Kuroshio intrusion. Anticyclonic eddies detached from December through February move westward at a speed of about 0.1 m s⁻¹ after shedding, whereas eddies detached in other months either stay at the place of origin or move westward at a very slow speed (less than 0.06 m s⁻¹). The HYCOM outputs and QuikSCAT wind data clearly show that the seasonal variation of eddy shedding is influenced by the monsoon winds. A comparison between eddy volume and integrated Ekman transport indicates that, once the integrated Ekman transport exceeds 2 × 10¹² m³ (which roughly corresponds to the volume of an eddy), the Kuroshio intrusion expands and an eddy shedding event occurs within 1 month. We infer that the Ekman drift of the northeasterly monsoon pushes the Kuroshio intrusion into the SCS, creates a net westward transport into the Strait, and leads to an eddy detachment from the Kuroshio.     

The requirements for stable metallothionein clusters examined using synthetic lobster domains.

Metallothioneins (MTs) are small, cysteine-rich proteins which detoxify xenobiotic metals such as cadmium (Cd) and mercury (Hg). In crustaceans and mammals they consist of two independent domains which are folded around metal-thiolate clusters. MT clusters of different origins, exhibiting distinct, highly conserved cysteine positions on their sequences, show differences in metal-cysteine coordination and reactivity. Lobster-MT, containing two Cd3 beta domains, is an important model for structure-function relationships among the clusters. The influence of (1) the position of the cysteine residues and (2) steric and electrostatic effects of neighboring amino acids on the folding and stability of MT cluster were investigated. Thus, the native lobster beta C and beta N domains (each having nine cysteines and binding three M2+ ions) and a modified domain Cd3 beta C-->N, in which the cysteines of the C-terminal domain were relocated to match the positions of those in the N-terminal domain, were chemically prepared and characterized. The synthetic native domains (Cd3 beta C and Cd3 beta N) were found to exhibit spectroscopic properties, metal-binding affinities and kinetic reactivity similar to the holo-protein. However, the modified Cd3 beta C-->N domain was unusually reactive and in the presence of Chelex, metal chelation resin, aggregated to a Cd5(beta C-->N)2 dimer, which exhibited unusual structure as observed by its 113Cd-nuclear magnetic resonance. These differences in structure and reactivity demonstrated that the requirements for formation of a stable Cd3S9 beta-cluster are more stringent than simply the sequential positions of the cysteines along the peptide chain and must include interactions involving neighboring, noncysteine amino acids.     

On the observed relationship between the Pacific Decadal Oscillation and the Atlantic Multi-decadal Oscillation

We studied the relationship between the dominant patterns of sea surface temperature (SST) variability in the North Pacific and the North Atlantic. The patterns are known as the Pacific Decadal Oscillation (PDO) and the Atlantic Multi-decadal Oscillation (AMO). In the analysis we used two different observational data sets for SST. Due to the high degree of serial correlation in the PDO and AMO time series, various tests were carried out to assess the significance of the correlations. The results demonstrated that the correlations are significant when the PDO leads the AMO by 1 year and when the AMO leads the PDO by 11–12 years. The possible physical processes involved are discussed, along with their potential implication for decadal prediction.     

The Indian Ocean’s asymmetric effect on the coupling of the Northwest Pacific SST and anticyclone anomalies during its spring–summer transition after El Niño

By comparing different climatologies in El Niño decaying summer with regard to the presence of Indian Ocean Basin (IOB) warming, we studied the effect of IOB warming on the Northwest Pacific sea surface temperature (SST) anomalies and the coupling process with the surface wind. Zonal asymmetric coupling feedback in the west and east of the Northwest Pacific were caused by the asymmetric spring–summer transition of the background tropical atmospheric circulation. Although the westward wind anomaly caused by the remote effect of IOB warming is found in the whole Northwest Pacific, reversal of the mean background surface winds in the western part leads to negative wind-evaporation SST (WES), whereas sustained trade winds lead to positive WES in the eastern part. The east–west SST gradient resulting from this zonal asymmetric evolution of SST sets off more positive feedback that strengthens the local anticyclone easterly anomalies.     

Algorithm for estimating sea surface temperatures based on Aqua/MODIS global ocean data. 2. Automated quality check process for eliminating cloud contamination

This study developed a post-processing quality check (QC) process to eliminate cloud contamination in infrared sea surface temperature (SST) without manual handling. Cloudiness of a pixel was evaluated quantitatively, in which the graduated verifications and a comprehensive decision from a combination of several tests were conducted. Additionally, the quality of SST data at the pixel was measured by acceptable limits from reference SST, which were obtained from historical data. The QC processed data showed good accuracy below 0.8°C, even in the near-cloud area. Before the QC, their accuracies including near-cloud areas were as poor as 2–5°C.