Nutrient Fluctuations in Marine Systems: Press Versus Pulse Nutrient Subsidies Affect Producer Competition and Diversity in Estuaries and Coral Reefs

Resource subsidy regimes, which range from presses to pulses, are common structuring forces in communities, yet research contrasting their effects is lacking. Many coastal marine ecosystems, including estuaries and coral reefs, have experienced increased nutrient subsidies while concurrently shifting to macroalgal dominance; however, the role of subsidy regime in transitions remains unknown. We created concentration–frequency distributions of nutrients in Cook’s Bay, Moorea, French Polynesia, and Carpinteria Salt Marsh Reserve, CA, USA. Both showed relatively high pulses interspersed by press concentrations. We grew dominant macroalgae alone and together in microcosms approximating these subsidy regimes to quantify individual performance and competitive outcomes. Subsidy regime changed growth and competitive abilities of macroalgae from both ecosystems but with divergent effects. In nutrient-limited reefs, different species were favoured under each enrichment regime, suggesting a fluctuating nutrient environment enhances diversity. In contrast, in eutrophic estuaries, enrichment of both regimes facilitated a single competitive dominant, suppressing diversity. Functional form groups did not predict responses to subsidy regime, likely because classifications ignore temporal variability in resource supplies. Because climate change will alter rainfall patterns globally, further accelerating nutrient subsidies from land to sea, understanding species’ responses to nutrient subsidy regimes is key to predicting the fate of coastal communities.     

Reactive Transport Modeling of Subaqueous Sediment Caps and Implications for the Long-Term Fate of Arsenic, Mercury, and Methylmercury

A 1-D biogeochemical reactive transport model with a full set of equilibrium and kinetic biogeochemical reactions was developed to simulate the fate and transport of arsenic and mercury in subaqueous sediment caps. Model simulations (50?years) were performed for freshwater and estuarine scenarios with an anaerobic porewater and either a diffusion-only or a diffusion plus 0.1-m/year upward advective flux through the cap. A biological habitat layer in the top 0.15?m of the cap was simulated with the addition of organic carbon. For arsenic, the generation of sulfate-reducing conditions limits the formation of iron oxide phases available for adsorption. As a result, subaqueous sediment caps may be relatively ineffective for mitigating contaminant arsenic migration when influent concentrations are high and sorption capacity is insufficient. For mercury, sulfate reduction promotes the precipitation of metacinnabar (HgS) below the habitat layer, and associated fluxes across the sediment–water interface are low. As such, cap thickness is a key design parameter that can be adjusted to control the depth below the sediment–water interface at which mercury sulfide precipitates. The highest dissolved methylmercury concentrations occur in the habitat layer in estuarine environments under conditions of advecting porewater, but the highest sediment concentrations are predicted to occur in freshwater environments due to sorption on sediment organic matter. Site-specific reactive transport simulations are a powerful tool for identifying the major controls on sediment- and porewater-contaminant arsenic and mercury concentrations that result from coupling between physical conditions and biologically mediated chemical reactions.     

Scale- and orientation-invariant scene similarity metrics for image queries

In this paper we extend our previous work on shape-based queries to support queries on configurations of image objects. Here we consider spatial reasoning, especially directional and metric object relationships. Existing models for spatial reasoning tend to rely on pre-identified cardinal directions and minimal scale variations, assumptions that cannot be considered as given in our image applications, where orientations and scale may vary substantially, and are often unknown. Accordingly, we have developed the method of varying baselines to identify similarities in direction and distance relations. Our method allows us to evaluate directional similarities without a priori knowledge of cardinal directions, and to compare distance relations even when query scene and database content differ in scale by unknown amounts. We use our method to evaluate similarity between a user-defined query scene and object configurations. Here we present this new method, and discuss its role within a broader image retrieval framework.     

Is proximity to land-based sources of coral stressors an appropriate measure of risk to coral reefs? An example from the Florida Reef Tract

Localized declines in coral condition are commonly linked to land-based sources of stressors that influence gradients of water quality, and the distance to sources of stressors is commonly used as a proxy for predicting the vulnerability and future status of reef resources. In this study, we evaluated explicitly whether proximity to shore and connections to coastal bays, two measures of potential land-based sources of disturbance, influence coral community and population structure, and the abundance, distribution, and condition of corals within patch reefs of the Florida Reef Tract. In the Florida Keys, long-term monitoring has documented significant differences in water quality along a cross-shelf gradient. Inshore habitats exhibit higher levels of nutrients (DIN and TP), TOC, turbidity, and light attenuation, and these levels decrease with increasing distance from shore and connections to tidal bays. In clear contrast to these patterns of water quality, corals on inshore patch reefs exhibited significantly higher coral cover, higher growth rates, and lower partial mortality rates than those documented in similar offshore habitats. Coral recruitment rates did not differ between inshore and offshore habitats. Corals on patch reefs closest to shore had well-spread population structures numerically dominated by intermediate to large colonies, while offshore populations showed narrower size-distributions that become increasingly positively skewed. Differences in size-structure of coral populations were attributed to faster growth and lower rates of partial mortality at inshore habitats. While the underlying causes for the favorable condition of inshore coral communities are not yet known, we hypothesize that the ability of corals to shift their trophic mode under adverse environmental conditions may be partly responsible for the observed patterns, as shown in other reef systems. This study, based on data collected from a uniform reef habitat type and coral species with diverse life-history and stress-response patterns from a heavily exploited reef system, showed that proximity to potential sources of stressors may not always prove an adequate proxy for assigning potential risks to reef health, and that hypothesized patterns of coral cover, population size-structure, growth, and mortality are not always directly related to water quality gradients.     

Zarafasaura oceanis, a new elasmosaurid (Reptilia: Sauropterygia) from the Maastrichtian Phosphates of Morocco and the palaeobiogeography of latest Cretaceous plesiosaurs

Though the Maastrichtian Phosphates of Morocco have yielded very rich marine vertebrate assemblages, plesiosaurs remain very scarce in these strata. The only hitherto recognized taxon was Plesiosaurus mauritanicus Arambourg, 1952, regarded here as a nomem dubium. Here we describe a new genus and species of elasmosaurid plesiosaur, Zarafasaura oceanis, which represents the first valid elasmosaurid plesiosaur described from the latest Cretaceous of Africa, and the second one from this continent. A phylogenetic analysis of plesiosauroids indicates that Zarafasaura oceanis has close affinities with elasmosaurids from the Late Cretaceous of North America and Japan. Among its distinctive suite of characters, the general shape and organisation of its squamosal and palate are unique among elasmosaurids. This new taxon completes our understanding of Late Cretaceous plesiosaur palaeobiodiversity and palaeobiogeography, and shows that Maastrichtian plesiosaurs were characterized by a quite high degree of endemism. They were also highly diversified and distributed worldwide, which supports the hypothesis of a catastrophic extinction of plesiosaurs at the K/T boundary.     

MNA as a Remedy for Arsenic Mobilized by Anthropogenic Inputs of Organic Carbon

The potential application of monitored natural attenuation (MNA) as a remedy for ground water contaminated with arsenic (As) is examined for a subset of contaminated sites, specifically those where naturally occurring As has been mobilized due to localized anthropogenic organic carbon (OC) releases. This includes sites subject to petroleum releases, exposure to landfill leachates, and OC additions for biostimulation of reductive dechlorination of chlorinated solvents. The key characteristic of these sites is that, under conditions prevailing before the anthropogenic OC introduction, the naturally occurring As in the subsurface was not mobile and did not adversely affect ground water quality. This suggests that, in the far-field (where background conditions are (re) established), As may be sequestered upon contact of the contaminated ground water with either or both the (uncontaminated) ambient ground water and the background aquifer minerals. The observed extents of elevated concentrations (or "footprints") of As and other chemical species, such as dissolved OC and iron (Fe), and related parameters, such as redox potential ( E _h) and dissolved oxygen, and their evolution over time can be used to assess the mobilization and sequestration of As and the potential feasibility of MNA as a remedial option. Ultimately, the capacity for As sequestration must be assessed in the context of the OC loading to the site, which may require "active" measures for source control. Monitoring is needed to confirm the continuing effectiveness of the MNA remedy or to indicate if contingency measures must be implemented.     

Unraveling the sequence and structure of the protein osteocalcin from a 42 ka fossil horse

We report the first complete amino acid sequence and evidence of secondary structure for osteocalcin from a temperate fossil. The osteocalcin derives from a 42 ka equid bone excavated from Juniper Cave, Wyoming. Results were determined by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-MS) and Edman sequencing with independent confirmation of the sequence in two laboratories. The ancient sequence was compared to that of three modern taxa: horse (Equus caballus), zebra (Equus grevyi), and donkey (Equus asinus). Although there was no difference in sequence among modern taxa, MALDI-MS and Edman sequencing show that residues 48 and 49 of our modern horse are Thr, Ala rather than Pro, Val as previously reported (Carstanjen B., Wattiez, R., Armory, H., Lepage, O.M., Remy, B., 2002. Isolation and characterization of equine osteocalcin. Ann. Med. Vet.146(1), 31-38). MALDI-MS and Edman sequencing data indicate that the osteocalcin sequence of the 42 ka fossil is similar to that of modern horse. Previously inaccessible structural attributes for ancient osteocalcin were observed. Glu₃₉ rather than Gln₃₉ is consistent with deamidation, a process known to occur during fossilization and aging. Two post-translational modifications were documented: Hyp₉ and a disulfide bridge. The latter suggests at least partial retention of secondary structure. As has been done for ancient DNA research, we recommend standards for preparation and criteria for authenticating results of ancient protein sequencing.     

A surface complexation and ion exchange model of Pb and Cd competitive sorption on natural soils

The bioavailability and fate of heavy metals in the environment are often controlled by sorption reactions on the reactive surfaces of soil minerals. We have developed a non-electrostatic equilibrium model (NEM) with both surface complexation and ion exchange reactions to describe the sorption of Pb and Cd in single- and binary-metal systems over a range of pH and metal concentration. Mineralogical and exchange properties of three different acidic soils were used to constrain surface reactions in the model and to estimate surface densities for sorption sites, rather than treating them as adjustable parameters. Soil heterogeneity was modeled with >FeOH and >SOH functional groups, representing Fe- and Al-oxyhydroxide minerals and phyllosilicate clay mineral edge sites, and two ion exchange sites (X⁻ and Y⁻), representing clay mineral exchange. An optimization process was carried out using the entire experimental sorption data set to determine the binding constants for Pb and Cd surface complexation and ion exchange reactions.Modeling results showed that the adsorption of Pb and Cd was distributed between ion exchange sites at low pH values and specific adsorption sites at higher pH values, mainly associated with >FeOH sites. Modeling results confirmed the greater tendency of Cd to be retained on exchange sites compared to Pb, which had a higher affinity than Cd for specific adsorption on >FeOH sites. Lead retention on >FeOH occurred at lower pH than for Cd, suggesting that Pb sorbs to surface hydroxyl groups at pH values at which Cd interacts only with exchange sites. The results from the binary system (both Pb and Cd present) showed that Cd retained in >FeOH sites decreased significantly in the presence of Pb, while the occupancy of Pb in these sites did not change in the presence of Cd. As a consequence of this competition, Cd was shifted to ion exchange sites, where it competes with Pb and possibly Ca (from the background electrolyte). Sorption on >SOH functional groups increased with increasing pH but was small compared to >FeOH sites, with little difference between single- and binary-metal systems. Model reactions and conditional sorption constants for Pb and Cd sorption were tested on a fourth soil that was not used for model optimization. The same reactions and constants were used successfully without adjustment by estimating surface site concentrations from soil mineralogy. The model formulation developed in this study is applicable to acidic mineral soils with low organic matter content. Extension of the model to soils of different composition may require selection of surface reactions that account for differences in clay and oxide mineral composition and organic matter content.     

Detecting and mapping slums using open data: a case study in Kenya

ABSTRACT

The worldwide slum population currently stands at over one billion, with substantial growth expected in the coming decades. Traditionally, slums have been mapped using information derived mainly from either physical indicators using remote sensing data, or socio-economic indicators using census data. Each data source on its own provides only a partial view of slums, an issue further compounded by data poverty in less-developed countries. To overcome such issues, this paper explores the fusion of traditional with emerging open data sources and data mining tools to identify additional indicators that can be used to detect and map the presence of slums, map their footprint, and map their evolution. Towards this goal, we develop an indicator database for slums using open sources of physical and socio-economic data that can be used to characterize slum settlements. Using this database, we then leverage data mining techniques to identify the most suitable combination of these indicators for mapping slums. Using three cities in Kenya as test cases, results show that the fusion of these data can improve the mapping accuracy of slums. These results suggest that the proposed approach can provide a viable solution to the emerging challenge of monitoring the growth of slums.