Molecular ecological study of <Emphasis Type="Italic">Siganus spinus</Emphasis> and <Emphasis Type="Italic">S. guttatus</Emphasis> from Okinawan waters based on mitochondrial DNA control region sequences

The mitochondrial DNA (mtDNA) control region was sequenced to examine the genetic variability and gene flow of juvenile Siganus spinus and S. guttatus. In total, 461 nucleotide sequences were obtained from 69 specimens of juvenile S. spinus from Okinawa Island and Ishigaki Island, in which 17 variable sites and 22 haplotypes were identified. Haplotype diversity (h) was high (0.9244 in Okinawa and 0.8984 in Ishigaki), whereas nucleotide diversity (π) was low (0.0063 in Okinawa and 0.0059 in Ishigaki). The two populations were not genetically distinct. Siganus guttatus, which do not form large schools at recruitment, in contrast S. spinus, were also analyzed by studying 152 individuals collected off Okinawa Island, Miyako Island, and Ishigaki Island. Of 476 nucleotide sequences, 50 were variable, and 42 haplotypes were identified. Genetic variability values were high (h = 0.8766 and π = 0.0151 in Okinawa; h = 0.9640 and π = 0.0192 in Miyako; h = 0.9161 and π = 0.0199 in Ishigaki). The Okinawa population was genetically isolated from the Miyako and Ishigaki populations. As a result, genetic diversity was high for each of these siganid populations despite their being target species for fisheries; however, the degree of inter-population gene flow was higher for S. spinus than S. guttatus, suggesting that these species exhibit different dispersal strategies.     

Late quaternary seismic stratigraphy and active faults of the Gulf of İzmit (NE Marmara Sea)

The Upper Quaternary seismic stratigraphy and active faults of the Gulf of İzmit were investigated by means of high-resolution shallow seismic profiling data in the source region of 1999 İzmit earthquake. High-resolution seismic reflection data correlated with borehole data indicate that the stratigraphy of İzmit Bay consists of three distinct depositional sequences formed in response to middle Pleistocene-Holocene sea-level changes. Reflector R, separating the pre-Holocene sequences (1 and 2) from the Holocene sequence (3), represents an erosional unconformity produced by the subaerial fluvial erosion of the continental shelves at the time of the last glacial maximum. Occasional, anomalous reflections (acoustic turbidity) observed within the Holocene sequence are interpreted as gas accumulations. The maximum thickness of the Holocene sediments is found to be about 25 m. The isopach map of Holocene sediment implies that the thickness of the Holocene decreases from the east towards the central and western basins of İzmit Bay. Two distinct fault systems are interpreted in İzmit Bay. The main fault system extending roughly in an E-W direction along the Gulf of İzmit is an active right lateral strike slip fault with a normal component. The secondary faults are normal faults striking in different directions and these are identified as being both active and inactive. In addition, prominent compressive features are identified in the seismic cross-sections of some profiles acquired to the east of Hersek Peninsula where the focal mechanisms of the aftershocks of the 1999 İzmit earthquake also reveal predominantly reverse faulting mechanisms, as identified by a local dense seismic network.     

Discrimination of spurious self-correlation in nondimensionalized analyses of fluid dynamical data

Nondimensionalization of variables enables us to treat experiment data much more simply and efficiently by decreasing the number of variables. In some cases, trivial conclusions (which Kenney, 1982, called spurious self-correlation) result from a formal application of dimensional analyses. In contrast, in some cases fully significant conclusions can be derived. We first discuss how to construct nondimensional variables retaining the physical meanings of variables. We then propose simple and efficient methods, especially the use of “spurious triangle (SpT)”, to discriminate between significant conclusions and spurious self-correlations in the analysis of nondimensionalized variables.     

Seasonal variations of the surface currents in the Tsushima Strait

Seasonal variations of the surface currents in the Tsushima Strait were investigated by analyzing the monthly mean surface currents measured with HF radar. Several new features of the surface currents have been found. One notable feature is the large, complicated seasonal variation in the current structure in the eastern channel of the strait. For example, in the southeastern and northwestern regions of the channel, southwestward countercurrents are found in summer while southeastward acrossshore currents are found in autumn and winter. The wind-driven flow (Ekman flow) as well as surface geostrophic currents are responsible for these complicated variations of the surface currents. To quantify each variation of the flow and current, the wind-driven flow was calculated from the monthly wind (more precisely, the friction velocity) using the monthly speed factor and deflection angle estimated in our previous study, and the surface geostrophic currents were then estimated by subtracting the wind-driven flow from the measured surface currents. It was found that the acrossshore currents are the wind-driven flow, and that the surface geostrophic currents flow almost in the along-shore direction, indicating the validity of the decomposition of the surface velocity into the wind-driven flow and the geostrophic currents using the speed factor and deflection angle. A real-vector empirical orthogonal function (EOF) analysis of the surface geostrophic currents shows a pair of eddies in the lee of Tsushima and Iki Islands as the first mode, which indicates that the southwestward countercurrents in the eastern channel are formed primarily by the incoming Tsushima Warm Current.     

Benthic habitat quality change as measured by macroinfauna community in a tidal flat on the west coast of Korea

Yellow Sea tidal flats are internationally recognised for their contribution to biological diversity and yet are under enormous pressure from reclamation, pollution and overexploitation. The benthic macroinfauna community is the dominant community on these tidal flats and a reliable indicator of benthic environmental changes. We surveyed the current benthic macroinfauna community of the Ganghwa Southern Tidal Flat, the largest remaining Korean mud flat in the Yellow Sea, in order to examine changes in the environmental situation of this benthic ecosystem. The results show a significant decline in species diversity from the last survey made in 2003, and a shift in species composition with appearances of polychaetes indicative of pollution and physical disturbances and other opportunistic species becoming dominant in both density and biomass. The benthic community shift observed during the two study periods may be associated with increased nutrient pollution as well as increased physical disturbances in this area. However, we recognise the limitations of the data both in frequency and scope but believe the significant changes to the composition of the benthic fauna are sufficient to warrant concern. Observations are required to examine the extent to which these human activities induce benthic community shift in this tidal flat.     

Crossing Filaments

Solar filaments show the position of large-scale polarity-inversion lines and are used for the reconstruction of large-scale solar magnetic field structure on the basis of Hα synoptic charts for the periods that magnetographic measurements are not available. Sometimes crossing filaments are seen in Hα filtergrams. We analyze daily Hα filtergrams from the archive of Big Bear Solar Observatory for the period of 1999 – 2003 to find crossing and interacting filaments. A number of examples are presented and filament patterns are compared with photospheric magnetic field distributions. We have found that all crossing filaments reveal quadrupolar magnetic configurations of the photospheric field and presume the presence of null points in the corona.     

Mapping the thickness of sediments in the Ljubljana Moor basin (Slovenia) using microtremors

The Ljubljana Moor basin is characterized by moderate bedrock topography and thicknesses of Quaternary lacustrine and fluvial sediments ranging from 0 to 200 m. More than 65 boreholes which reached the bedrock were drilled in the area, but their distribution in the basin is very uneven and some data from the boreholes uncertain. There are also no data on S-velocity distribution within the basin, but seismic refraction measurements pointed out a rather uniform increase of P-velocity with depth, great impedance contrast with the bedrock and relatively small lateral velocity variations. The microtremor horizontal-to-vertical spectral ratio (HVSR) method was therefore applied as a complementary tool to seismic refraction survey to map the thickness of sediments. First, microtremors were measured at the locations of boreholes which reached the bedrock and the resonance frequencies determined. The inverse power relationship between the resonance frequency and the thickness of sediments was then determined from 53 data pairs. The quality of the correlation is moderate due to possible heterogeneities in sediments and possible 3D effects in some minor areas, but the obtained parameters correspond well to the values obtained in six other European basins. Secondly, a 16 km-long discontinuous seismic refraction profile was measured across the whole basin, leaving uncovered some larger segments where active seismic measurements were not possible. Microtremors were then measured at 64 locations along the same profile, using 250 m point spacing, without leaving any gaps. The frequency–thickness relationship was used to invert resonance frequencies to depths. These were first validated using the results of the seismic refraction survey, which showed good agreement, and finally used for interpolation in the segments of missing refraction data to obtain a continuous depth profile of the bedrock. The study has shown that the microtremor method can be used as a complementary tool for mapping the thickness of unconsolidated sediments also in areas characterized by moderate bedrock topography. As the input data are always to some extent uncertain, it is important to have a sufficiently large number of borehole data to establish a frequency–thickness relationship, as well as some additional independent geophysical information for its validation.     

Estimating areal production of intertidal microphytobenthos based on spatio-temporal community dynamics and laboratory measurements

In situ Microphytobenthic community dynamics were combined with laboratory measurement of predominant species by fluorescence methods to estimate the areal primary production. Field investigation of community dynamics of microphytobenthos (MPB) was conducted from August 2006 to August 2007 in intertidal flats of the Nakdong River estuary, Korea. MPB Biomass varied between 0.47 and 16.58 μg cm^?3 in the surface 1 cm sediment, with two dominant diatom species, Amphora coffeaeformis and Navicula sp., occupying average 77.2 ± 14.9% of total number of MPB cells. The biomass was higher in the slightly muddy sand sites than that in the sand site, and showed different pattern of seasonal variation. The profile of vertical distribution of biomass was an exponential decrease trend with depth in sediments. The biomass proportions in the uppermost 3 mm were 57.6% and 37.8% with and without the presence of biofilm, respectively. The two dominant species were cultured in laboratory, and their photosynthetic parameters, rETR_max (relative maximum electron transport rate), α (light utilization coefficient) and E _k (light saturation parameter) were derived from rETR (relative ETR)-irradiance curves by Imaging- PAM (pulse amplitude modulated) fluorometry. The rETR-irradiance curves showed no significant difference of photosynthetic activities between the two species. The areal potential production ranged from 0.74 to 2.22 g C m^?2 d^?1.     

Assessing desertification by using soil indices

Desertification generally refers to land degradation in arid, semiarid, and dry semi-humid climatic zones. It involves five principal processes: vegetation degradation, water erosion, wind erosion, salinization and waterlogging, and soil crusting and compaction. The aim of this study is assessing desertification using soil criteria. For this purpose, nine indices including sodium absorption ratio (SAR), soil gypsum percentage, soil texture, the content of HCO₃ ^?, the percentage of the organic matter, electrical conductivity (EC), pH, the content of the soil sodium, and chloride were used. The soil samples were taken in the north of Zayandeh-Rood River in Isfahan province of Iran, using soil data randomly sampled in a depth of 0–20 cm. After assessing the normality of the samples using Kolmogorov-Smirnov test, indices were imported into GIS environment and interpolated with IDW and normal and discrete kriging methods for delineating soil characteristics maps based on MEDALUS model. In this model, the data were firstly changed from 100 to 200. Thus 100 and 200 are estimated as the best and worst quality, respectively. Then the final map of soil criteria has been created by geometric mean of its indicators. The results showed that the maximum area is related to the medium class of desertification and is equal to 44,746 ha. The areas of severe and very severe classes of desertification are equal to 30,949 and 351 ha, respectively. The results also revealed that the indices of the organic matter and soil gypsum percentage are the most influential indices which affect desertification phenomenon.     

New classes of spectral densities for lattice processes and random fields built from simple univariate margins

Quasi arithmetic and Archimedean functionals are used to build new classes of spectral densities for processes defined on any d-dimensional lattice \mathbbZ^d{\mathbb{Z}^d} and random fields defined on the d-dimensional Euclidean space \mathbbR^d{\mathbb{R}^d}, given simple margins. We discuss the mathematical features of the proposed constructions, and show rigorously as well as through examples, that these new classes of spectra generalize celebrated classes introduced in the literature. Additionally, we obtain permissible spectral densities as linear combinations of quasi arithmetic or Archimedean functionals, whose associated correlation functions may attain negative values or oscillate between positive and negative ones. We finally show that these new classes of spectral densities can be used for nonseparable processes that are not necessarily diagonally symmetric.