Developing service-oriented applications in a grid environment

The Open-source Project for a Network Data Access Protocol (OPeNDAP) software framework has evolved over the last 10 years to become a robust, high performance, service oriented architecture for the access and transport of scientific data from a broad variety of disciplines, over the Internet. Starting with version 4.0 of the server release, Hyrax, has at its core, the Back-End Server (BES). The BES offers ease of programming, extensibility and reliability allowing added functionality especially related to high-performance data Grids, that goes beyond its original goal of distributed data access. We present the fundamentals of the BES server as a component based architecture, as well as our experiences using the BES to distribute data processing in Grid-oriented intensive parallel computational tasks.     

Contaminant concentrations and toxicity of sea-surface microlayer near Los Angeles, California

Sea-surface microlayer samples were collected from six nearshore areas receiving different amounts of anthropogenic inputs. The samples were analyzed for selected trace metals, chlorinated hydrocarbons, and polycyclic aromatic hydrocarbons. The relative toxicities of the samples were determined with fish embryo bioassays.Contaminant concentrations generally increased from offshore to the inshore stations. Contaminant concentrations were several orders of magnitude higher in microlayer samples from the highly industrialized Los Angeles and Long Beach harbors compared to samples from a site 15km offshore. Microlayer samples from the inshore stations were significantly more toxic, and induced significantly more developmental abnormalities and chromosome aberrations, than samples from the offshore stations.     

Wind-driven interannual variability over the northeast Pacific Ocean

Interannual variability of the sea surface height (SSH) over the northeast Pacific Ocean is hindcast with a reduced-gravity, quasi-geostrophic model that includes linear damping. The model is forced with monthly Ekman pumping fields derived from the NCEP reanalysis wind stresses. The numerical solution is compared with SSH observations derived from satellite altimeter data and gridded at a lateral resolution of 1 degree. Provided that the reduced gravity parameter is chosen appropriately, the results demonstrate that the model has significant hindcast skill over interior regions of the basin, away from continental boundaries. A damping time scale of 2 to 3 years is close to optimal, although the hindcast skill is not strongly dependent on this parameter.A simplification of the quasi-geostrophic model is considered in which Rossby waves are eliminated, yielding a Markov model driven by local Ekman pumping. The results approximately reproduce the hindcast skill of the more complete quasi-geostrophic model and indicate that the interannual SSH variability is dominated by the local response to wind forcing. There is a close correspondence the two leading empirical orthogonal modes of the local model and those of the observed SSH anomalies. The latter account for over half of the variance of the interannual signal over the region.     

Changes to sediment sources following wildfire in a forested upland catchment,southeastern Australia

Few investigations link post‐fire changes to sediment sources and erosion processes with sediment yield response at the catchment scale. This linkage is essential if downstream impacts on sediment transport after fire are to be understood in the context of fire effects across different forest environments. In this study, we quantify changing source contributions to fine sediment (<63 µm) exported from a eucalypt forest catchment (136 ha) burnt by wildfire. The study catchment is one of a pair of research catchments located in the East Kiewa River valley in southeastern Australia that have been the subject of a research program investigating wildfire effects on runoff, erosion, and catchment sediment/nutrient exports. This previous research provided the opportunity to couple insights gained from a range of measurement techniques with the application of fallout radionuclides ¹³⁷Cs and ²¹⁰Pb_ex to trace sediment sources. It was found that hillslope surface erosion dominated exports throughout the 3·5‐year post‐fire measurement period. During this time there was a pronounced decline in the proportional surface contribution from close to 100% in the first six months to 58% in the fourth year after fire. Over the study period, hillslope surface sources accounted for 93% of the fine sediment yield from the burnt catchment. The largest decline in the hillslope contribution occurred between the first and second years after fire, which corresponded with the previously reported large decline in sediment yield, breakdown of water repellency in burnt soils, substantial reduction in hillslope erodibility, and rapid surface vegetation recovery. Coupling the information on sediment sources with hillslope process measurements indicated that only a small proportion of slopes contributed sediment to the catchment outlet, with material derived from near‐channel areas dominating the post‐fire catchment sediment yield response. Copyright © 2011 John Wiley & Sons, Ltd.     

Compositional characteristics of olivines from Apollo 12 samples

The olivine phenocrysts of four basalts (12004, 12008, 12009 and 12022) are concentrically zoned and have core compositions about as magnesian as experimentally produced liquidas olivines, features which suggest fractional crystallization and absence of Fe-Mg reequilibration. In the magnesium- and olivine-rich granular basalt 12035, the olivines are either unzoned or are zoned toward adjacent grains and have compositions more iron-rich than either cumulus olivines or liquidus olivines (should the rock represent the composition of a melt), features which suggest extensive Fe-Mg re-equilibration.     

The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems: Part II - Performance and application to the California Current System

The Regional Ocean Modeling System (ROMS) 4-dimensional variational (4D-Var) data assimilation systems have been systematically applied to the mesoscale circulation environment of the California Current to demonstrate the performance and practical utility of the various components of ROMS 4D-Var. In particular, we present a comparison of three approaches to 4D-Var, namely: the primal formulation of the incremental strong constraint approach; the dual formulation “physical-space statistical analysis system”; and the dual formulation indirect representer approach. In agreement with theoretical considerations all three approaches converge to the same ocean circulation estimate when using the same observations and prior information. However, the rate of convergence of the dual formulation was found to be inferior to that of the primal formulation. Other aspects of the 4D-Var performance that relate to the use of multiple outer-loops, preconditioning, and the weak constraint are also explored. A systematic evaluation of the impact of the various components of the 4D-Var control vector (i.e. the initial conditions, surface forcing and open boundary conditions) is also presented. It is shown that correcting for uncertainties in the model initial conditions exerts the largest influence on the ability of the model to fit the available observations. Various important diagnostics of 4D-Var are also examined, including estimates of the posterior error, the information content of the observation array, and innovation-based consistency checks on the prior error assumptions. Using these diagnostic tools, we find that more than 90% of the observations assimilated into the model provide redundant information. This is a symptom of the large percentage of satellite data that are used and to some extent the nature of the data processing employed. This is the second in a series of three papers describing the ROMS 4D-Var systems.