Use of suppressive subtractive hybridization and cDNA arrays to discover patterns of altered gene expression in the liver of dihydrotestosterone and 11-ketotestosterone exposed adult male largemouth bass (Micropterus salmoides)

In this study male largemouth bass (LMB) were exposed to the naturally occurring androgens, dihydrotestosterone (DHT) or 11-ketotestosterone (11-KT) in order to identify genes that are differentially regulated by these steroid hormones. Using subtractive hybridization on livers of fish treated with DHT against vehicle control, many novel LMB genes were cloned. These genes were added to our gene library and arrayed. Six genes were up-regulated and five were down-regulated by both androgens. But, each androgen also regulated specific genes. One gene that was identified as a potential androgen marker was spermidine-spermine-N(1)-acetyltransferase that was up-regulated by both androgens. Determining which genes are responsive to natural androgens will help to identify biochemical pathways that are impacted.     

A detailed survey near Mount Eratosthenes Eastern Mediterranean

A detailed marine survey made to the South West of Mount Eratosthenes is described. The results show the existence of a narrow zone of WNW trending deformed sediment west of the mount surrounded by an evaporite sequence in different stages of deformation.This work was intended to settle the conflict between the results of three previous interpretations of the tectonic structure of this area. We see the area being characterised by five areas with different degrees of tectonic deformation yet showing little causal relationship to overburden of Nile Cone sediments. A fault controlled cliff coincides with the previously described salt wall and strike slip fault yet we see no evidence for its diapiric origin nor positive evidence for strike slip motion along it. We concur with the previously observed area of higher free-air gravity anomalies termed the Eratosthenes tectonic zone, although it is traversed by several boundaries between areas of different deformation. Our results thus show some agreements and some re-interpretations of the observations. This complicated region is not yet fully understood however.     

Petroleum geochemistry of the Kimmeridge Clay of onshore Southern and Eastern England

The Kimmeridge Clay is considered a major oil source rock for the North Sea hydrocarbon province. The formation is also developed onshore in an organic-rich mudstone facies. This paper examines the possibility of onshore oil generation from the Kimmeridge Clay. Geochemically, onshore basin margin sediments contain rich, potential source horizons with mainly Type l/Type ll oil-prone kerogen, but are immature. Some deeper Cleveland Basin sediments have reached marginal maturity. Burial history reconstruction suggests significant formation palaeoburial depths in central areas of the Cleveland and Wessex Basins. Computed vitrinite isoreflectance contours show the Wealden and Isle of Wight Kimmeridge Clay to be thermally mature. Basin modelling suggests an early Palaeogene onset of oil generation in parts of the Cleveland Basin, while maximum oil generation could have been reached by the formation base in the Isle of Wight area during the late Cretaceous. Although basin subsidence ceased in the Neogene, in the Weald and Isle of Wight, where the formation is still deeply buried, oil generation probably continued for some time during uplift. Thus significant quantities of oil could have been generated. Whether or not this oil is present today however, would depend on the correct timing of suitable migration and trap structures.     

Documenting hurricane impacts on coral reefs using two-dimensional video-mosaic technology

Four hurricanes impacted the reefs of Florida in 2005. In this study, we evaluate the combined impacts of hurricanes Dennis, Katrina, Rita, and Wilma on a population of Acropora palmata using a newly developed video‐mosaic methodology that provides a high‐resolution, spatially accurate landscape view of the reef benthos. Storm damage to A. palmata was surprisingly limited; only 2 out of 19 colonies were removed from the study plot at Molasses Reef. The net tissue losses for those colonies that remained were only 10% and mean diameter of colonies decreased slightly from 88.4 to 79.6 cm. In contrast, the damage to the reef framework was more severe, and a large section (6 m in diameter) was dislodged, overturned, and transported to the bottom of the reef spur. The data presented here show that two‐dimensional video‐mosaic technology is well‐suited to assess the impacts of physical disturbance on coral reefs and can be used to complement existing survey methodologies.     

Contaminant concentrations and toxicity of sea-surface microlayer near Los Angeles, California

Sea-surface microlayer samples were collected from six nearshore areas receiving different amounts of anthropogenic inputs. The samples were analyzed for selected trace metals, chlorinated hydrocarbons, and polycyclic aromatic hydrocarbons. The relative toxicities of the samples were determined with fish embryo bioassays.Contaminant concentrations generally increased from offshore to the inshore stations. Contaminant concentrations were several orders of magnitude higher in microlayer samples from the highly industrialized Los Angeles and Long Beach harbors compared to samples from a site 15km offshore. Microlayer samples from the inshore stations were significantly more toxic, and induced significantly more developmental abnormalities and chromosome aberrations, than samples from the offshore stations.     

Atmospheric forcing of fine-sand transport on a low-energy inner shelf: south-central Louisiana,USA

Hydrodynamic and sediment transport measurements from instrumentation deployed during a 54-day winter period at two sites on the Louisiana inner shelf are presented. Strong extratropical storms, with wind speeds of 7.8 to 15.1 m s^-1, were the dominant forcing mechanism during the study. These typically caused mean oscillatory flows and shear velocities about 33% higher than fair weather (averaging 12.3 and 3.2 cm s^-1 at the landward site, and 11.4 and 2.7 cm s^-1 at the seaward site, respectively). These responses were coupled with mean near-bottom currents more than twice as strong as during fair weather (10.3 and 7.5 cm s^-1 at the landward and seaward sites, respectively). These flowed in approximately the same direction as the veering wind, causing a net offshore transport of fine sand. Weak storms were responsible for little sediment transport whereas during fair weather, onshore sand transport of approximately 25-75% of the storm values appears to have occurred. This contradicts previous predictions of negligible fair-weather sediment movement on this inner shelf.     

Tectonic control over topography and channel sedimentation across the forearc slope of the southern Kurile Trench

A high-resolution seismic survey covering more than 2,000 km² has revealed the processes responsible for the slope morphology and channel sedimentation across the forearc slope-basin of the Kurile Arc–NE Japan Arc collision zone, offshore from Tokachi (Hokkaido, Japan). The dominant slope contours parallel the trench but, in the middle and lower reaches of the southern slope, contours are convex-shaped with an offshore trend. This sector of the slope is traversed diagonally by the Hiroo submarine channel. The offshore-trending convex contours and the channel course have developed through the interplay of tectonic and sedimentary processes, including the development of anticlines, anticline-induced lobe sedimentation and channel avulsion. In its upper reaches, the channel is restricted by a topographic low associated with NNW–SSE-trending anticlines which developed within the upper and middle slope sectors during late Miocene uplift. The uplift timing and trend of these anticlines indicate that they resulted from collision, the channel sedimentology and slope morphology of the middle and lower slopes having been influenced by Pliocene uplift of NE–SW-trending anticlines. The trends of these anticlines parallel those of the Kurile Trench. The Pliocene and early Pleistocene strata of the middle and lower slopes consist of ponded lobe sediments deposited along the palaeo-Hiroo submarine channel on the landward side of the anticlines. As a lobe pile accumulated, the channel thalweg shifted to the north of the stack, allowing the channel to bypass the topographic high formed by the growing stack. Thick levee deposits built up along the channel course during the late Pleistocene and Holocene. These levees, along with the Pliocene and early Pleistocene lobes, are reflected in the present-day sigmoid-shaped, convex offshore-trending contours. Thus, the interplay of subduction- and collision-related anticlines, tectonic-related channel ponding, and avulsion has contributed to the slope morphology of the southern Kurile Trench.     

Swath mapping of the seafloor and its application to deep-bottom fisheries in New Caledonia

A bottom longline fishery operated in the EEZ of New Caledonia from 1988 to 1991. Fishing focused on five seamounts with summits at depths ranging from 500 to 750 m. The target species was alfonsino, Beryx splendens. As the soundings available from marine charts were not detailed enough, the fishing masters had to make their own charts in order to set the gear in the right location. A series of 11 scientific cruises devoted to a research program on alfonsino was launched in late 1991. During the first scientific cruises, several days were spent mapping the seabed to improve the existing knowledge of the topography of three seamounts by coupling the EDO echosounder depth measurements to the GPS positions. As this procedure is slow, it is applicable to limited areas or, if a wider grid is used, to large zones to locate major structures such as ridges and seamounts. The emergence of the multibeam echosounder has greatly improved seabed mapping performance. This tool seems to fit the requirement of exploratory deep-bottom fishing particularly well, as it covers large areas while providing details of the bottom. The EM 12 was used to obtain bathymetry and imagery of the SE portion of the EEZ of New Caledonia, covering an approximate area of 70,000 km² in two weeks. For depths ranging from 500 to 4,500 m, the results were impressive. They confirmed the known major features and provided greater topographical detail, revealing fine unknown structures. They also provided information on the type of substratum, information which might influence the fishing strategy. Finally, they made it possible to obtain an accurate estimate of the exploitable area which in turn led to new stock estimates.     

Characterization of interface roughness of rippled sand off Fort Walton Beach, Florida

As part of the environmental characterization to model acoustic bottom scattering during the high-frequency sediment acoustics experiment (SAX99), fine-scale sediment roughness of a medium sand was successfully measured within a 600 /spl times/ 600-m area by two methods: stereo photography and a technique using a conductivity system. Areal coverage of the two methods, representing approximately 0.16 m/sup 2/ of the sea floor, was comparable, resulting in the depiction and quantification of half-meter wavelength sand ripples. Photogrammetric results were restricted to profiles digitized at 1-mm intervals; sediment conductivity results generated gridded micro-bathymetric measurements with 1- to 2-cm node spacing. Roughness power spectra give similar results in the low-spatial-frequency domains where the spectra estimated from both approaches overlap. However, spectra derived from higher resolution photogrammetric results appear to exhibit a multiple-power-law fit. Roughness measurements also indicate that spectrum changes as a function of time. Application of statistical confidence bounds on the power spectra indicates that roughness measurements separated by only 1-2 m may be spatially nonstationary.     

Remote estimation of surficial seafloor properties through the application Angular Range Analysis to multibeam sonar data

The variation of the backscatter strength with the angle of incidence is an intrinsic property of the seafloor, which can be used in methods for acoustic seafloor characterization. Although multibeam sonars acquire backscatter over a wide range of incidence angles, the angular information is normally neglected during standard backscatter processing and mosaicking. An approach called Angular Range Analysis has been developed to preserve the backscatter angular information, and use it for remote estimation of seafloor properties. Angular Range Analysis starts with the beam-by-beam time-series of acoustic backscatter provided by the multibeam sonar and then corrects the backscatter for seafloor slope, beam pattern, time varying and angle varying gains, and area of insonification. Subsequently a series of parameters are calculated from the stacking of consecutive time series over a spatial scale that approximates half of the swath width. Based on these calculated parameters and the inversion of an acoustic backscatter model, we estimate the acoustic impedance and the roughness of the insonified area on the seafloor. In the process of this inversion, the behavior of the model parameters is constrained by established inter-property relationships. The approach has been tested using a 300 kHz Simrad EM3000 multibeam sonar in Little Bay, NH. Impedance estimates are compared to in situ measurements of sound speed. The comparison shows a very good correlation, indicating the potential of this approach for robust seafloor characterization.