Molecular cloning and mRNA expression of cytochrome P4501A1 and 1A2 in the liver of common minke whales (Balaenoptera acutorostrata)

This study presents full-length cDNA sequences of CYP1A1 and 1A2, in common minke whale (Balaenoptera acutorostrata) from the North Pacific. Both CYP1A1 and CYP1A2 cDNAs had an open reading frame of 516 amino acid residues, and predicted molecular masses were 58.3 kDa and 58.1 kDa, respectively. The deduced full-length amino acid sequence of CYP1A1 revealed higher identities with those of sheep (86%) and pig (87%), and that of CYP1A2 was most closely related to human (82%) and monkey CYP1A2 (82%) among species from which CYP1A2 has been isolated so far. Differences in certain conserved and functional amino acid residues of CYP1A1 and 1A2 between common minke whale and other mammalian species indicate the possibility of their specific metabolic function. Concentrations of organochlorine compounds (OCs) including PCBs and DDTs analyzed in common minke whale liver showed no significant correlation with hepatic mRNA expression levels of CYP1A1 and CYP1A2, indicating no induction of these enzymes by such OCs.     

Stratigraphic records of tsunamis along the Japan Sea,southwest Hokkaido,northern Japan

The stratigraphy of tsunami deposits along the Japan Sea, southwest Hokkaido, northern Japan, reveals tsunami recurrences in this particular area. Sandy tsunami deposits are preserved in small valley plains, whereas gravelly deposits of possible tsunami origin are identified in surficial soils covering a Holocene marine terrace and a slope talus. At least five horizons of tsunami events can be defined in the Okushiri Island, the youngest of which immediately overlies the Ko‐d tephra layer (1640 AD) and was likely formed by the historical Oshima‐Ohshima tsunami in 1741 AD. The four older tsunami deposits, dated using accelerator mass spectrometry ¹⁴C, were formed at around the 12th century, 1.5–1.6, 2.4–2.6, and 2.8–3.1 ka, respectively. Tsunami sand beds of the 1741 AD and circa 12th century events are recognized in the Hiyama District of Hokkaido Island, but the older tsunami deposits are missing. The deposits of these two tsunamis are found together at the same sites and distributed in regions where wave heights of the 1993 tsunami (Hokkaido Nansei‐oki earthquake, Mw = 7.7) were less than 3 m. Thus, the 12th century tsunami waves were possibly generated near the south of Okushiri Island, whereas the 1993 tsunami was generated towards the north of the island. The estimated recurrence intervals of paleotsunamis, 200–1100 years with an average of 500 years, likely represents the recurrence interval of large earthquakes which would have occurred along several active faults offshore of southwest Hokkaido.     

Refinement of the age of the Middle Miocene Fort Ternan Beds,Western Kenya,and its implications for Old World biochronology

It has become increasingly obvious over the past two decades that the fossiliferous strata at Fort Ternan, Kenya, are probably somewhat younger than 14 Ma, an age which has long been attached to the deposits. This realisation flows from geological and biochronological observations. In order to test the hypothesis, resampling of all the lava flows in the region of Fort Ternan was undertaken in 2003, especially those underlying the Fort Ternan Beds in the Kipchorion Gorge where the sequence is the most complete. Samples obtained from lava flows underlying and overlying the fossil beds were analysed for anorthoclase K/Ar and ⁴⁰Ar/³⁹Ar and biotite ⁴⁰Ar/³⁹Ar age determinations. The results reveal that the age of the fossiliferous sediments is ca $13.7\pm 0.3\text{Ma}$. Since Fort Ternan yielded the ‘core fauna’ that defines Faunal Set IV of the East African biochronological sequence this refinement of its age will impact on age estimates of neighbouring Faunal Sets, as well as on other faunas correlated to Fort Ternan, including those in Europe belonging to MN Zones MN 5, MN 6 and MN 7/8. To cite this article: M. Pickford et al., C. R. Geoscience 338 (2006).     

Zircon U-Pb dating,mineralogy and geochemical characteristics of the gabbro and gabbro-diorite bodies,Boein–Miandasht,western Iran

ABSTRACT

The Boein–Miandasht Complex (BMC) is a part of the Sanandaj–Sirjan metamorphic basement and is cut by gabbroic to granitoid bodies. These intrusive bodies comprise gabbro, gabbro–diorite associated with fine-grained, in part porphyritic leucocratic granitoids. Zircon U–Pb dating of representative gabbro–diorite samples yielded ages of 166.4 ± 1.8 Ma and 163.5 ± 6.3 Ma (Callovian, the latest stage of the Middle Jurassic). Mineral chemistry of the gabbro–diorites shows a homogeneous composition of the main minerals, main augite to diopside clinopyroxene and plagioclase (~An_17–59). Moreover, low Al_Z/TiO₂ ratios of the clinopyroxene grains suggest that the rocks were generated in a within-plate tectonic regime. The SiO₂ contents of the gabbro-diorite rocks are between 46.36 and 55.61 wt. %, Al₂O₃ ranges from 7.57 to 17.98 wt. %. The TiO₂ contents vary from 1.18 to 3.65 wt. %, Fe₂O₃ from 7.41 to 12.95 wt. %, the MgO ranges between 3.49 and 15.75 wt. %, Na₂O from 0.65 to 5.08 wt. % and K₂O from 0.48 to 1.08 wt. %. These rocks mostly plot in the alkali-gabbro field. Compared to chondrite are characterized by enrichment of LREEs over HREE, enrichment of LIL elements (e.g. Rb, Sr and Ba) and obvious positive anomalies of Nb and Ti. Based on the chemical composition, and mineral composition, this complex was generated in an extensional tectonic regime by partial melting of the hot asthenospheric mantle which is not more consistent with previous models which have suggested for SaSZ evolution in before.     

X-ray CT based numerical analysis of fracture flow for core samples under various confining pressures

The X-ray CT based numerical analysis of fracture flow for core samples, recently developed by the authors, was applied to two granite core samples having either a mated artificial or a mated natural fracture at confining pressures of 5 to 50 MPa. A third-generation medical X-ray CT scanner was used to image the samples within a core holder consisting of an aluminum liner and a carbon fiber overwrap. Fracture models (i.e., aperture distributions) were obtained by the CT images, the resolution of which was coarser than the apertures, and a single-phase flow simulation was performed using a local cubic law-based fracture flow model. Numerical results were evaluated by a fracture porosity measurement and a solution displacement experiment using NaCl and NaI aqueous solutions. These numerical results coincided only qualitatively with the experimental results, primarily due to image noise from the aluminum liner of the core holder. Nevertheless, the numerical results revealed flow paths within the fractures and their changes with confining pressure, whereas the experimental results did not provide such results. Different stress-dependencies in the flow paths were observed between the two samples despite the similar stress-dependency in fracture porosity and permeability. The changes in total area of the flow paths with confining pressure coincided qualitatively with changes in breakthrough points in the solution displacement experiment. Although the data is limited, the results of the present study suggest the importance of analyzing fluid flows within naturally fractured core samples under in situ conditions in order to better understand the fracture flow characteristics in a specific field. As demonstrated herein, X-ray CT-based numerical analysis is effective for addressing this concern. Using a multi-phase flow model, as well as a core holder constructed of an engineered plastic, should provide a useful, non-destructive, and non-contaminative X-ray CT-based fracture flow analysis for core samples under in situ conditions in future studies.     

Talnakhite Associated with Andradite Skarn at Fuka, Okayama Prefecture, Japan

Abstract. Talnakhite occurs in an andradite skarn forming adjacent to a leucocratic quartz monzonite dike intruded into limestone at Fuka. The mineral densely contains exsolution lamellae of chalcopyrite, and the talnakhite-chalcopyrite inter-growth is intimately associated with bornite that contains chalcopyrite as a lattice-form exsolution. The chemical composition of the talnakhite acquired on an electron probe microanalyzer corresponds to Cu_9.00Fe_8.08S_15.92, very close to the ideal chemical formula Cu₉Fe₈S₁₆. Nickel is not detected. The X-ray powder diffraction lines are well indexed on a body-centered cubic cell with a = 10.589 Å. The characteristic (110) reflection of talnakhite is clearly observed at 7.49 Å. The present talnakhite retains the chalcopyrite-like colored polished surface without tarnish in air more than a month.
Talnakhite at Fuka is likely to be derived from breakdown of Cu-rich intermediate solid solution ( iss ), which was in equilibrium with Fe-rich bornite at elevated temperatures. Talnakhite thus formed has survived the subsequent cooling processes, probably because the ƒ_s2 was maintained in suitable levels preventing its decomposition into bornite and chalcopyrite.     

Development of an apparatus to measure groundwater qualities in situ and to sample groundwater using boreholes

 To accurately measure the pH, Eh, EC and temperature of groundwater retrieved from boreholes, a deep groundwater sampling apparatus was developed which provided sensory measurements both in situ and in a flow-through cell at ground level. Under a pressure of 1×10⁶ Pa the in situ accuracy of the apparatus sensor was within the following limits: pH ±0.2, temperature ±0.1°C, Eh ±10 mV, and EC ±2.4%. The measuring and sampling of deep groundwater from a borehole of more than 1000 m in depth was performed continuously for 30 days. Values of pH were the same for the in situ sensor, the flow-through cell sensor and the laboratory measurements of the sampled water. At the beginning of the sampling period, Eh values of the in situ sensor indicated deep groundwater conditions. The apparatus is particularly useful for Eh measurement. Chemical composition and stable isotope ratios indicated that the groundwater sampled from more than 1000 m depth was a connate water with a chemical composition slightly different from seawater of the present time, and the groundwater retrieved from 800 m depth was a meteoric water. Natural radioactive elements are thought to be the origin of the tritium in the groundwater retrieved from the 1000 m depth. Received: 6 August 1996 / Accepted: 22 October 1996     

In situ Atomic Force Microscopy study of dissolution of the barite (0 0 1) surface in water at 30 °C

The dissolution behavior of the barite (0 0 1) surface in pure water at 30 °C was investigated using in situ Atomic Force Microscopy (AFM), to better understand the dissolution mechanism and the microtopographical changes that occur during the dissolution, such as steps and etch pits. The dissolution of the barite (0 0 1) surface started with the slow retreat of steps, after which, about 60 min later, the <hk0> steps of one unit cell layer or multi-layers became two-step fronts (fast “f” and slow “s” steps) with a half-unit cell layer showing different retreat rates. The “f” step had a fast retreat rate (≈(14 ± 1) × 10⁻² nm/s) and tended to have a jagged step edge, whereas the “s” step (≈(1.8 ± 0.1) × 10⁻² nm/s) had a relatively straight front. The formation of the “f” steps led to the formation of a new one-layer step, where the front of the “s” step was overtaken by that of the immediate underlying “f” step. The “f” steps also led to the decrease of the <hk0> steps and the increase in the percentage of stable steps parallel to the [0 1 0] direction during the dissolution.Etch pits, which could be observed after about 90 min, were of three types: triangular etch pits with a depth of a half-unit cell, shallow etch pits, and deep etch pits. The triangular etch pits were bounded by the step edges parallel to [0 1 0], [1 2 0], and [] and had opposite orientations in the upper half and lower half layers. Shallow etch pits that had a depth of two or more half-unit cell layers had any two consecutive pits pointing in the opposite direction of each other. The triangular etch pit appeared to grow by simultaneously removal of a row of ions parallel to each direction from the three step edges. At first, deep etch pits were elongated in the [0 1 0] direction with a curved outline and then gradually developed to an angular form bounded by the {1 0 0}, {3 1 0}, and (0 0 1) faces. The retreat rate of the (0 0 1) face was much slower than those of the {1 0 0} and {3 1 0} and tended to separate into two rates ((0.13 ± 0.01) × 10⁻² nm/s for the deep etch pits derived from a screw dislocation and (0.07 ± 0.01) × 10⁻² nm/s for those from other line defects).The changes in the dissolution rate of a barite (0 0 1) surface during the dissolution were estimated using the retreat rates and densities of the various steps as well as the growth rates, density, and areas of the lateral faces of the deep etch pits that were obtained from this AFM analysis. Our results showed that the dissolution rate of the barite (0 0 1) surface gradually increased and approached the bulk dissolution rate because of the change in the main factor determining the dissolution rate from the density of the steps to the growth and the density of the deep etch pits on the surface.     

Zircon U–Pb ages and Sr–Nd isotope ratios for the Sirstan granitoid body,NE Iraq: Evidence of magmatic activity in the Middle Cretaceous Period

The Sirstan granitoid (SG), comprising diorite and granodiorite, is located in the Shalair Valley area, in the northeastern part of Iraq within the Sanandaj–Sirjan Zone (SSZ) of the Zagros Orogenic Belt. The U–Pb zircon dating of the SG rocks has revealed a concordia age of 110 Ma, which is interpreted as the age of crystallization of this granitoid body during the Middle Cretaceous. The whole-rock Rb–Sr isochron data shows an age of 52.4 ± 9.4 Ma (MSWD = 1.7), which implies the reactivation of the granitoid body in the Early Eocene due to the collision between the Arabian and Iranian plates. These rocks show metaluminous affinity with low values of Nb, Ta and Ti compared to chondrite, suggesting the generation of these rocks over the subduction zone in an active continental margin regime. The SG rocks are hornblende-bearing I-type granitoids with microgranular mafic enclaves. The positive values of ?_Nd (t = 110 Ma) (+0.1 to +2.7) and the low (⁸⁷Sr/⁸⁶Sr)_i ratios (0.7044 to 0.7057) indicate that the magma source of the SG granitoids is a depleted subcontinental mantle. The chemical and isotope compositions show that the SG body originated from the metasomatic mantle without a major role for continental contamination. Our findings show that the granitoid bodies distributed in the SSZ were derived from the continuous Neo-Tethys subduction beneath the SSZ in Mesozoic times and that the SSZ was an active margin in the Middle Cretaceous.     

Another sea area separated from the Panthalassic Ocean in the Norian,the Late Triassic: The lowest Sr isotopic composition of the Ishimaki limestone in central Japan

Mt. Ishimaki is the Jurassic accretionary complex of the Chichibu Belt in Toyohashi City, near Nagoya in central Japan. The Ishimaki limestone is thought to be seamount-type limestone. The P₁ elements of the conodonts Norigondolella navicula and Ancyrogondolella quadrata found in the limestone indicate it is of Norian age. The Sr isotopic compositions of 45 Ishimaki limestone samples ranged from 0.7055 to 0.7077. Eighteen of these samples had lower Sr isotopic compositions than the lowest Sr isotopic composition (0.7068) of seawater throughout the Phanerozoic. The Sr isotopic compositions in the limestone block are generally lower at the base of the block and higher at the top. The present Sr isotopic compositions of the Ishimaki limestone are unlikely to have been reduced by post-depositional alteration because most of the limestone samples had a low amount of Mn (<300 ppm) or high Sr/Mn ratios (>2) and the conodont elements had low (1–2) CAI (conodont alteration index) values. Additionally, there was little acid-insoluble residue. Thus, the low Sr isotopic compositions are thought to represent the strontium of the past ambient seawater. The low Sr isotopic compositions are in complete disagreement with the generally recognised range of seawater Sr isotopic compositions in the Norian stage of the Late Triassic (0.7075–0.7078) because the depositional environment of the Ishimaki limestone was closed or semi-closed from the Panthalassic Ocean. Therefore, the Sr isotopic composition of the limestone differs from that of the Panthalassic seawater. The low Sr isotopic compositions were probably affected by Sr inflows from mafic oceanic crust by hydrothermal fluid circulation or from hinterlands surrounded by mafic rocks by river water circulation.