Jurassic lagoonal environments and quasi-abiotic platy limestone accumulation: microbial interventions

Within the regressive sequence (eustatic sea-level fall) that characterizes the French Southern Jura carbonate platform during the Kimmeridgian, a succession of three facies (called here units 1–3) may be observed in a palaeolagoon near Orbagnoux. Unit 1 is a shallow-water, intensely burrowed, carbonate deposit; unit 2 (consisting of laminated, organic matter-rich carbonate) represents a shallow lagoonal environment, prone to stromatolite development and organic matter accumulation; unit 3 consists of platy limestones almost devoid of identifiable biota. Trace element distributions indicate that depositional and early diagenetic conditions must have been reducing during deposition of unit 1 and, especially, unit 2, whereas they were much less reducing during deposition of unit 3. However, the latter does not contain body or trace fossils, with the exception of structures interpreted as calcified bacteria. The reasons why the apparently normal marine environment of unit 3 did not allow a normal biota to develop are explored and lead us to propose that: (i) unit 2 may be a Jurassic counterpart of modern kopara deposits (stromatolites of French Polynesian atolls); and (ii) unit 3 may be the result of palaeokopara reworking. This model invokes the extensive intervention of microbes in the formation of these carbonate deposits.     

Clam farmers and Oystercatchers: Effects of the degradation of Lanice conchilega beds by shellfish farming on the spatial distribution of shorebirds

The Manila clam Ruditapes philippinarum cultivation is an original shellfish farming activity strongly mechanized. In the Chausey archipelago (France) this activity settles on the Lanice conchilega beds, habitat known to host a rich and diversified benthic macrofauna and which is an attractive feeding ground for birds. A first study highlighted that this activity had strong negative effects on the L. conchilega beds and their associated benthic macrofauna. Here we assess the impacts of such an activity on the Eurasian Oystercatcher Haematopus ostralegus for which Chausey is one of the most important national breeding sites and which is also a common species in winter, spring and autumn migrations. We found that Oystercatchers significantly selected the L. conchilega beds to feed and that their spatial distribution was significantly modified after the creation of new clam concessions. In a context of a growing disappearance of pristine coastal ecosystems for the benefit of anthropo-ecosystems, we discuss the problem of the degradation of such benthic habitats with a low resilience which may loose their high functional value.     

Impact of the Phaeocystis globosa spring bloom on the intertidal benthic compartment in the eastern English Channel: a synthesis

From 1999 to 2005, studies carried out in the frame of regional and national French programs aimed to determine whether the Phaeocystisglobosa bloom affected the intertidal benthic communities of the French coast of the eastern English Channel in terms of composition and/or functioning. Study sites were chosen to cover most of the typical shore types encountered on this coast (a rocky shore, an exposed sandy beach and a small estuary). Both the presence of active Phaeocystis cells and their degradation product (foam) did have a significant impact on the studied shores. The primary production and growth rates of the kelp Saccharina latissima decreased during the bloom because of a shortage of light and nutrient for the macroalgae. On sandy sediments, the benthic metabolism (community respiration and community primary production), as well as the nitrification rate, were enhanced during foam deposits, in relation with the presence of bacteria and active pelagic cells within the decaying colonies. In estuarine sediments, the most impressive impact was the formation of a crust at the sediment surface due to drying foam. This led to anoxic conditions in the surface sediment and resulted in a high mortality among the benthic community. Some organisms also tended to migrate upward and were then directly accessible to the higher trophic level represented by birds. Phaeocystis then created a shortcut in the estuarine trophic network. Most of these modifications lasted shortly and all the systems considered came back to their regular properties and activities a few weeks after the end of the bloom, except for the most impacted estuarine area.     

Axial and Radial Permeability Evolutions of Compressed Sandstones: End Effects and Shear-band Induced Permeability Anisotropy

The influence of hydrostatic and uniaxial stress states on the porosity and permeability of sandstones has been investigated. The experimental procedure uses a special triaxial cell which allows permeability measurements in the axial and radial directions. The core sleeve is equipped with two pressure samplers placed distant from the ends. They provide mid-length axial permeability measure as opposed to the overall permeability measure, which is based on the flow imposed through the pistons of the triaxial cell. The core sleeve is also equipped to perform flows in two directions transverse to the axis of the sample. Two independent measures of axial and complementary radial permeability are thus obtained. Both Fontainebleau sandstone specimens with a porosity of about 5.8% to 8% and low permeability ranging from 2.5 mD to 30 mD and Bentheimer sandstone with a porosity of 24% and a high permeability of 3D have been tested. The initial axial permeability values obtained by each method are in good agreement for the Fontainebleau sandstone. The Bentheimer sandstone samples present an axial mid-length permeability 1.6 times higher than the overall permeability. A similar discrepancy is also observed in the radial direction, also it relates essentially to the shape of flow lines induced by the radial flow. All the tested samples have shown a higher stress dependency of overall and radial permeability than mid-length permeability. The effect of compaction damage at the pistons/sample and radial ports/sample interfaces is discussed. The relevance of directional permeability measurements during continuous uniaxial compression loadings has been shown on the Bentheimer sandstone until the failure of the sample. We can efficiently measure the influence of brittle failure associated to dilatant regime on the permeability: It tends to increase in the failure propagation direction and to decrease strongly in the transverse direction.     

Nearshore intertidal topography and topographic-forcing mechanisms of an Amazon-derived mud bank in French Guiana

The intertidal topography in the vicinity of the contact zone between a longshore-migrating Amazon-derived mud bank and the muddy terrestrial shoreline in French Guiana was defined from a combination of satellite-based SPOT images, airborne lidar data and high-resolution total station ground surveying of a 75,000 m² plot. The three approaches, at different scales, were carried out at different periods. Digital elevation models generated from these three techniques, however, converge in highlighting the topographic micro-scale (centimetre-scale) variability of the mud bank surface while showing meso- to macro-scale features that reflect the dominance of wave activity in mud bank mobilization and attachment to the terrestrial shoreline. These features are bar-like longshore forms that develop in the intertidal zone from the shoreward drift of gel-like mud that accompanies wave damping. The features progressively become consolidated through mud drying out associated with the formation of cracks that are important in mangrove colonization and ecological changes. Fluid-mud accumulations formed from high concentrations of mud trapped in the troughs behind these linear bar forms generate flat featureless surfaces that tend to mask topographic heterogeneity of the mud bank surface. Dewatering of these lower zones by progressive mud consolidation complements tidal water discharge in providing a mechanism for the formation of the numerous channels that dissect the linear bar features, especially in the upper intertidal contact zone with the terrestrial shoreline. This dissection in the upper intertidal zone generates an intricate topography that replaces the original linear bar forms. The innermost bar forms a ‘suture’ zone with the terrestrial shoreline. Reworking of this bar by high-energy waves may lead to mud dispersal over old terrestrial mangrove substrates, resulting in stifling of mangrove pneumatophores. Mud reworking at the narrow trailing edge of the mud bank in the subtidal and lower intertidal zones leaves behind a flat bed that will eventually be completely eroded by waves in the course of mud bank migration.     

Does the Phaeocystis bloom affect the diel migration of the suprabenthos community?

The suprabenthos comprises all bottom-dependent animals, mainly crustaceans (including decapods and peracarids), which perform--with varying amplitude, intensity and regularity--seasonal or daily vertical migrations above the sea floor. The presence of organisms in the Benthic Boundary Layer is determined by two general factors: (1) organism behaviour, which depends on the light penetration in the water column and (2) boundary-layer hydrodynamics. In the coastal zone of the eastern English Channel, during the spring Phaeocystis bloom, the presence of gelatinous colonies modifies the penetration of light in the water column, which may seriously affect the abundance and/or the behaviour of the suprabenthos community. To clarify this point, 19 suprabenthic hauls were taken with a modified Macer-GIROQ sledge both during the day and during the night, from March to June 2002 (i.e., before, during and after the bloom). Two sites, located in the coastal and offshore areas of the Ophelia medium sand macrobenthic community were investigated. The bloom had no effect on species richness and abundance in either site. However, the diel migrations of some dominant species--such as the cumaceans Pseudocuma longicornis and Pseudocuma similis, the mysid Gastrosaccus spinifer and the amphipod Stenothoe marina--were modified. During the bloom, diurnal and nocturnal suprabenthic abundances were similar, and in the absence of bloom, species remained benthic during the day. The permanent presence of suprabenthic species in the Benthic Boundary Layer could have a consequence on their predation by fish (mainly juveniles which preferentially consume small crustaceans in their diet), unless fish behaviour and predation efficiency--especially for visual predators--are also disturbed by changes in light intensity.     

Simultaneous quantification of epistemic and aleatory uncertainty in GMPEs using Gaussian process regression

This paper presents a Bayesian non-parametric method based on Gaussian Process (GP) regression to derive ground-motion models for peak-ground parameters and response spectral ordinates. Due to its non-parametric nature there is no need to specify any fixed functional form as in parametric regression models. A GP defines a distribution over functions, which implicitly expresses the uncertainty over the underlying data generating process. An advantage of GP regression is that it is possible to capture the whole uncertainty involved in ground-motion modeling, both in terms of aleatory variability as well as epistemic uncertainty associated with the underlying functional form and data coverage. The distribution over functions is updated in a Bayesian way by computing the posterior distribution of the GP after observing ground-motion data, which in turn can be used to make predictions. The proposed GP regression models is evaluated on a subset of the RESORCE data base for the SIGMA project. The experiments show that GP models have a better generalization error than a simple parametric regression model. A visual assessment of different scenarios demonstrates that the inferred GP models are physically plausible.     

Sand spit dynamics in a large tidal-range environment: Insight from multiple LiDAR,UAV and hydrodynamic measurements on multiple spit hook development,breaching, reconstruction,and shoreline changes

Sand spits with distal hooks have been well documented from coasts with low to moderate tidal ranges, unlike high tidal-range environments. Datasets from 15 LiDAR and 3 UAV surveys between 2009 and 2019 on the Agon spit in Normandy (France), a setting with one of the largest tidal ranges in the world (mean spring tidal range: 11 m), combined with in-situ hydrodynamic records between 2013 and 2017, highlight a three-stage pattern of spit hook evolution. Stage 1 (2009–2013) commenced with the onshore migration and attachment of a swash bar, followed by persistent spit accretion updrift of the bar and erosion downdrift because of the slow speed of bar migration in this large tidal-range environment. In stage 2 (2013–2016), three overwash events and a 220 m-wide breach culminating in the total destruction of the spit during winter 2015–2016 involved the landward mobilization of thousands of cubic metres of sand. These events occurred during short durations (a few hours) when spring high tides coincided with relatively energetic waves, underscoring the importance of storms in rapid spit morphological change. Strong spring tidal currents maintained the breach. Stage 3 (2016–2019) has involved new hook construction through welding of a swash bar and spit longshore extension, highlighting the resilience of the spit over the 10-year period, and involving a positive sediment balance of 244 000 m³. The three stages bring out, by virtue of the temporal density of LiDAR and UAV data used, a high detail of spit evolution relative to earlier studies in this macrotidal setting. The large tidal range strongly modulates the role of waves and wave-generated longshore currents, the main process drivers of spit evolution, by favouring long periods of inertia in the course of the spring–neap tidal cycle, but also brief episodes of significant morphological change when storm waves coincide with spring high tides. © 2020 John Wiley & Sons, Ltd.