The effects of solution chemistry on the sticking efficiencies of viable Enterococcus faecalis: An atomic force microscopy and modeling study

Atomic force microscopy (AFM) and Derjaguin-Landau-Verwey-Overbeek (DLVO) theory in combination with the interaction force boundary layer (IFBL) model have been used to empirically and theoretically calculate sticking efficiencies (α) of Enterococcus faecalis cells against a silica glass surface. Sticking efficiencies were calculated in solutions of varying pH and ionic strength and related to maximum distances of transport through a hypothetical soil block using colloid filtration theory.AFM measurements show that the repulsive and attractive forces between E. faecalis cells and a glass surface are a function of ionic strength but are less sensitive to changes in solution pH. Zeta (ζ)-potential measurements of the cells and glass surfaces correlate with these trends. Calculated DLVO energy profiles predict much greater sensitivity to changing solution chemistry. Sticking efficiencies derived from AFM measurements range from 9.6 × 10⁻¹⁷ to 1 in solutions of low ionic strength (IS) and from 2.6 × 10⁻³³ to 1 at higher IS. Corresponding α values determined from DLVO theory are essentially zero in all tested solutions.Sticking efficiencies calculated in this study are smaller than values determined from column and field studies in similar systems; however, α derived from AFM data and the IFBL model more closely represent field data than do values calculated from DLVO energy values. A comparison with different methods of calculating α suggests that reversible adhesion may be significant in column-scale transport studies.     

The holstein interglaciation: Time-stratigraphic position and correlation to stable-isotope stratigraphy of deep-sea sediments

Marine molluscan shells from para-type and other loclities of the Holsteinian interglaciation were dated by Th/U and the electron spin resonance (ESR) method to more than 350,000 and 370,000 yr B.P., beyond the limit of Th/U dating. The high age estimate is corroborated by a K/Ar age of 420,000 yr B.P. determined from volcanic ash near the base of the Ariendorf paleosol in the Middle Rhine valley believed to be a pedostratigraphic equivalent of the Holsteinian. Shells from the Herzeele marine unit III, an equivalent of the Wacken (Dömnitz) warm stage in northern France and subsequent to the Holsteinian, revealed ages between 300,000 and 350,000 yr B.P. A correlation of these two warm stages with marine oxygen-isotope stages 11 and 9 on the SPECMAP and CARTUNE time scales is suggested. From the benthic oxygen-isotope record one may infer that no exceptionally high global sea-level rise corresponds to the large transgressions of the Holstein Sea in northern Germany. Therefore, a significant proportion of the transgression was probably the result of an unusually large local glacial-isostatic depression caused by the extreme buildup of ice during the preceding Elster glaciation (stage 12). According to the deep-sea record, it lasted approximately 50% longer than the subsequent cold stage 10. The outstanding soil formation with Braunlehm and the well-developed thermal optimum of the Holsteinian are tentatively related to a phase of minimum sea-ice cover in the Norwegian-Greenland Sea, as deduced from long benthic carbon-isotope records from the central Atlantic.     

Citizens as sensors: the world of volunteered geography

In recent months there has been an explosion of interest in using the Web to create, assemble, and disseminate geographic information provided voluntarily by individuals. Sites such as Wikimapia and OpenStreetMap are empowering citizens to create a global patchwork of geographic information, while Google Earth and other virtual globes are encouraging volunteers to develop interesting applications using their own data. I review this phenomenon, and examine associated issues: what drives people to do this, how accurate are the results, will they threaten individual privacy, and how can they augment more conventional sources? I compare this new phenomenon to more traditional citizen science and the role of the amateur in geographic observation.     

Relative timing of deformation and two-stage gold mineralization at the Hutti Mine, Dharwar Craton, India

Gold mineralization at Hutti is confined to a series of nine parallel, N–S to NNW–SSE trending, steeply dipping shear zones. The host rocks are amphibolites and meta-rhyolites metamorphosed at peak conditions of 660±40°C and 4±1 kbar. They are weakly foliated (S₁) and contain barren quartz extension veins. The auriferous shear zones (reefs) are typically characterized by four alteration assemblages and laminated quartz veins, which, in places, occupy the entire reef width of 2–10 m, and contain the bulk of gold mineralization. A <1.5 m wide distal chlorite-sericite (+biotite, calcite, plagioclase) alteration zone can be distinguished from a 3–5 m wide proximal biotite-plagioclase (+quartz, muscovite, calcite) alteration zone. Gold is both spatially and temporally associated with disseminated arsenopyrite and pyrite mineralization. An inner chlorite-K-feldspar (+quartz, calcite, scheelite, tourmaline, sphene, epidote, sericite) alteration halo, which rims the laminated quartz veins, is characterized by a pyrrhotite, chalcopyrite, sphalerite, ilmenite, rutile, and gold paragenesis. The distal chlorite-sericite and proximal biotite-plagioclase alteration assemblages are developed in microlithons of the S₂–S₃ crenulation cleavage and are replaced along S₃ by the inner chlorite-K-feldspar alteration, indicating a two-stage evolution for gold mineralization. Ductile D₂ shearing, alteration, and gold mineralization formed the reefs during retrograde evolution and fluid infiltration under upper greenschist to lower amphibolite facies conditions (560±60°C, 2±1 kbar). The reefs were reactivated in the D₃ dextral strike-slip to oblique-slip environment by fault-valve behavior at lower greenschist facies conditions (ca. 300–350°C), which formed the auriferous laminated quartz veins. Later D₄ crosscutting veins and D₅ faults overprint the gold mineralization. The alteration mineralogy and the structural control of the deposit clearly points to an orogenic style of gold mineralization, which took place either during isobaric cooling or at different levels of the Archean crust. From overlaps in the tectono-metamorphic history, it is concluded that gold mineralization occurred during two tectonic events, affecting the eastern Dharwar craton in south India between ca. 2550 – 2530 Ma: (1) The assemblage of various terranes of the eastern block, and (2) a tectono-magmatic event, which caused late- to posttectonic plutonism and a thermal perturbation. It differs, however, from the pre-peak metamorphic gold mineralization at Kolar and the single-stage mineralization at Ramagiri. Notably, greenschist facies gold mineralization occurred at Hutti 35–90 million years later than in the western Dharwar craton. Editorial handling: G. Beaudoin     

新疆北部古地磁研究

通过和布克赛尔、克拉玛依、玛纳斯—乌鲁木齐地区泥盆纪到白垩纪古地磁研究,主要取得以下结果:(1)首次建立了准噶尔西北缘及南缘石炭纪—白垩纪古地磁极移曲线,由石炭纪到二叠纪的古地磁极位置基本在同一区间,说明该时期这些地区为一个统一的构造单元,而其古地磁极明显与塔里木、哈萨克斯坦、西伯利亚地块存在着差异。(2)该地区侏罗纪及白垩纪古地磁结果与塔里木地块结果一致,侏罗纪乌鲁木齐与和布克赛尔磁偏角相差30°左右,说明和布克赛尔地区相对乌鲁木齐地区逆时针旋转了30°左右,晚古生代以后曾发生过南向移动,而侏罗、白垩纪以来均向北发生了相当规模的北向运动,并发生了相对旋转,目前东、西准噶尔的构造格局可能就是由于局部相对旋转造成的。(3)中国大陆在早二叠世还不是一个联合的整体,而是以相互分离的独立块体分布于45°N—15°S的古特提斯洋中。(4)该地区二叠纪的磁偏角为165°—168°,而塔里木为218°,哈萨克斯坦为229°,说明存在35°—55°的逆时针旋转,这个旋转可能是由于西部推覆构造造成的。如果将西准噶尔超基性岩带顺时针旋转35°—55°后,东准噶尔超基性岩带、西准噶尔超基性岩带和斋桑泊—鲁布佐夫斯克超基性岩带应在同一构造带上。(5)该地区晚古生代古纬度变化不明显,位于30°—45     

Exploring the sensitivity of coastal inundation modelling to DEM vertical error

As sea level is projected to rise throughout the twenty-first century due to climate change, there is a need to ensure that sea level rise (SLR) models accurately and defensibly represent future flood inundation levels to allow for effective coastal zone management. Digital elevation models (DEMs) are integral to SLR modelling, but are subject to error, including in their vertical resolution. Error in DEMs leads to uncertainty in the output of SLR inundation models, which if not considered, may result in poor coastal management decisions. However, DEM error is not usually described in detail by DEM suppliers; commonly only the RMSE is reported. This research explores the impact of stated vertical error in delineating zones of inundation in two locations along the Devon, United Kingdom, coastline (Exe and Otter Estuaries). We explore the consequences of needing to make assumptions about the distribution of error in the absence of detailed error data using a 1 m, publically available composite DEM with a maximum RMSE of 0.15 m, typical of recent LiDAR-derived DEMs. We compare uncertainty using two methods (i) the NOAA inundation uncertainty mapping method which assumes a normal distribution of error and (ii) a hydrologically correct bathtub method where the DEM is uniformly perturbed between the upper and lower bounds of a 95% linear error in 500 Monte Carlo Simulations (HBM+MCS). The NOAA method produced a broader zone of uncertainty (an increase of 134.9% on the HBM+MCS method), which is particularly evident in the flatter topography of the upper estuaries. The HBM+MCS method generates a narrower band of uncertainty for these flatter areas, but very similar extents where shorelines are steeper. The differences in inundation extents produced by the methods relate to a number of underpinning assumptions, and particularly, how the stated RMSE is interpreted and used to represent error in a practical sense. Unlike the NOAA method, the HBM+MCS model is computationally intensive, depending on the areas under consideration and the number of iterations. We therefore used the HBM+ MCS method to derive a regression relationship between elevation and inundation probability for the Exe Estuary. We then apply this to the adjacent Otter Estuary and show that it can defensibly reproduce zones of inundation uncertainty, avoiding the computationally intensive step of the HBM+MCS. The equation-derived zone of uncertainty was 112.1% larger than the HBM+MCS method, compared to the NOAA method which produced an uncertain area 423.9% larger. Each approach has advantages and disadvantages and requires value judgements to be made. Their use underscores the need for transparency in assumptions and communications of outputs. We urge DEM publishers to move beyond provision of a generalised RMSE and provide more detailed estimates of spatial error and complete metadata, including locations of ground control points and associated land cover.     

Evaluation of a Photosynthesis-Based Canopy Resistance Formulation in the Noah Land-Surface Model

Accurately representing complex land-surface processes balancing complexity and realism remains one challenge that the weather modelling community is facing nowadays. In this study, a photosynthesis-based Gas-exchange Evapotranspiration Model (GEM) is integrated into the Noah land-surface model replacing the traditional Jarvis scheme for estimating the canopy resistance and transpiration. Using 18-month simulations from the High Resolution Land Data Assimilation System (HRLDAS), the impact of the photosynthesis-based approach on the simulated canopy resistance, surface heat fluxes, soil moisture, and soil temperature over different vegetation types is evaluated using data from the Atmospheric Radiation Measurement (ARM) site, Oklahoma Mesonet, 2002 International H₂O Project (IHOP_2002), and three Ameriflux sites. Incorporation of GEM into Noah improves the surface energy fluxes as well as the associated diurnal cycle of soil moisture and soil temperature during both wet and dry periods. An analysis of midday, average canopy resistance shows similar day-to-day trends in the model fields as seen in observed patterns. Bias and standard deviation analyses for soil temperature and surface fluxes show that GEM responds somewhat better than the Jarvis scheme, mainly because the Jarvis approach relies on a parametrised minimum canopy resistance and meteorological variables such as air temperature and incident radiation. The analyses suggest that adding a photosynthesis-based transpiration scheme such as GEM improves the ability of the land-data assimilation system to simulate evaporation and transpiration under a range of soil and vegetation conditions.     

Regional climate modelling over complex terrain: an evaluation study of COSMO-CLM hindcast model runs for the Greater Alpine Region

In this study the results of the regional climate model COSMO-CLM (CCLM) covering the Greater Alpine Region (GAR, 4°–19°W and 43°–49°N) were evaluated against observational data. The simulation was carried out as a hindcast run driven by ERA-40 reanalysis data for the period 1961–2000. The spatial resolution of the model data presented is approx. 10 km per grid point. For the evaluation purposes a variety of observational datasets were used: CRU TS 2.1, E-OBS, GPCC4 and HISTALP. Simple statistics such as mean biases, correlations, trends and annual cycles of temperature and precipitation for different sub-regions were applied to verify the model performance. Furthermore, the altitude dependence of these statistical measures has been taken into account. Compared to the CRU and E-OBS datasets CCLM shows an annual mean cold bias of ?0.6 and ?0.7 °C, respectively. Seasonal precipitation sums are generally overestimated by +8 to +23 % depending on the observational dataset with large variations in space and season. Bias and correlation show a dependency on altitude especially in the winter and summer seasons. Temperature trends in CCLM contradict the signals from observations, showing negative trends in summer and autumn which are in contrast to CRU and E-OBS.     

Climate Suitability for Stable Malaria Transmission in Zimbabwe Under Different Climate Change Scenarios

Climate is one factor that determines the potential range of malaria. As such, climate change may work with or against efforts to bring malaria under control. We developed a model of future climate suitability for stable Plasmodium falciparum malaria transmission in Zimbabwe. Current climate suitability for stable malaria transmission was based on the MARA/ARMA model of climatic constraints on the survival and development of the Anopheles vector and the Plasmodium falciparum malaria parasite. We explored potential future geographic distributions of malaria using 16 projections of climate in 2100. The results suggest that, assuming no future human-imposed constraints on malaria transmission, changes in temperature and precipitation could alter the geographic distribution of malaria in Zimbabwe, with previously unsuitable areas of dense human population becoming suitable for transmission. Among all scenarios, the highlands become more suitable for transmission, while the lowveld and areas with low precipitation show varying degrees of change, depending on climate sensitivity and greenhouse gas emission stabilization scenarios, and depending on the general circulation model used. The methods employed can be used within or across other African countries.