Vertical zonation and distributions of calanoid copepods through the lower oxycline of the Arabian Sea oxygen minimum zone

This paper provides the first comprehensive analysis of calanoid copepod vertical zonation and community structure at midwater depths (300–1000 m) through the lower oxygen gradient (oxycline) (0.02 to 0.3 ml/L) of an oxygen minimum zone (OMZ). Feeding ecology was also analyzed. Zooplankton were collected with a double 1 m² MOCNESS plankton net in day and night vertically-stratified oblique tows from 1000 m to the surface at six stations during four seasons as part of the 1995 US Joint Global Ocean Flux Study (JGOFS) Arabian Sea project. The geographic comparison between a eutrophic more oxygenated onshore station and an offshore station with a strong OMZ served as a natural experiment to elucidate the influence of depth, oxygen concentration, season, food resources, and predators on the copepod distributions.Copepod species and species assemblages of the Arabian Sea OMZ differed in their spatial and vertical distributions relative to environmental and ecological characteristics of the water column and region. The extent and intensity of the oxycline at the lower boundary of the OMZ, and its spatial and temporal variability over the year of sampling, was an important factor affecting distributional patterns. Calanoid copepod species showed vertical zonation through the lower OMZ oxycline. Clustering analyses defined sample groups with similar copepod assemblages and species groups with similar distributions. No apparent diel vertical migration for either calanoid or non-calanoid copepods at these midwater depths was observed, but some species had age-related differences in vertical distributions. Subzones of the OMZ, termed the OMZ Core, the Lower Oxycline, and the Sub-Oxycline, had different copepod communities and ecological interactions. Major distributional and ecological changes were associated with surprisingly small oxygen gradients at low oxygen concentrations. The calanoid copepod community was most diverse in the most oxygenated environments (oxygen >0.14 ml/L), but the rank order of abundance of species was similar in the Lower Oxycline and Sub-Oxycline. Some species were absent or much scarcer in the OMZ Core. Two copepod species common in the Lower Oxycline were primarily detritivorous but showed dietary differences suggesting feeding specialization. The copepod Spinocalanus antarcticus fed primarily on components of the vertical particulate flux and suspended material, a less versatile diet than the co-occurring copepod Lucicutia grandis. Vertical zonation of copepod species through the lower OMZ oxycline is probably a complex interplay between physiological limitation by low oxygen, potential predator control, and potential food resources. Pelagic OMZ and oxycline communities, and their ecological interactions in the water column and with the benthos, may become even more widespread and significant in the future ocean, if global warming increases the extent and intensity of OMZs as predicted.     

Degradation of phytoplankton-derived organic matter: Implications for carbon and nitrogen biogeochemistry in coastal ecosystems

Experiments were conducted using seawater from the Oregon continental shelf to determine: (1) rates of phytoplankton-derived particulate organic matter (POM) and dissolved organic matter (DOM) degradation by natural microbial communities, and (2) whether inorganic nutrients or flagellate grazing limit the bacterial response to, and subsequent degradation of, the DOM. In the initial seawater samples, nutrients were depleted and organic matter concentrations were elevated above concentrations found in upwelled water, indicative of recent bloom conditions. In whole water treatments incubated for 3 d, an average of 24% of the total organic C and 33% of the POC was degraded, with some portion of the POC being converted to DOC. In treatments incubated after POM was removed by filtration, DOC degradation was initially rapid and then proceeded at a slower rate. After 3 d, an average of 41% of the DOC was degraded. Selective degradation of the C-component of both the POM and DOM relative to the N-component was observed. Reductions in flagellate grazing resulted in increases in bacterial abundance and enhanced DOC degradation, while inorganic nutrient amendments had little effect. Overall, these results suggest that a fraction of the phytoplankton-derived POM and DOM can be rapidly degraded, contributing to oxygen consumption on the continental shelf. The long degradation time of a less labile DOC fraction relative to potential offshelf transport mechanisms suggests that Oregon's coastal waters may be a source of DOC to adjacent offshore waters of the North Pacific.     

Bioremediation in Fractured Rock: 1. Modeling to Inform Design,Monitoring, and Expectations

Field characterization of a trichloroethene (TCE) source area in fractured mudstones produced a detailed understanding of the geology, contaminant distribution in fractures and the rock matrix, and hydraulic and transport properties. Groundwater flow and chemical transport modeling that synthesized the field characterization information proved critical for designing bioremediation of the source area. The planned bioremediation involved injecting emulsified vegetable oil and bacteria to enhance the naturally occurring biodegradation of TCE. The flow and transport modeling showed that injection will spread amendments widely over a zone of lower‐permeability fractures, with long residence times expected because of small velocities after injection and sorption of emulsified vegetable oil onto solids. Amendments transported out of this zone will be diluted by groundwater flux from other areas, limiting bioremediation effectiveness downgradient. At nearby pumping wells, further dilution is expected to make bioremediation effects undetectable in the pumped water. The results emphasize that in fracture‐dominated flow regimes, the extent of injected amendments cannot be conceptualized using simple homogeneous models of groundwater flow commonly adopted to design injections in unconsolidated porous media (e.g., radial diverging or dipole flow regimes). Instead, it is important to synthesize site characterization information using a groundwater flow model that includes discrete features representing high‐ and low‐permeability fractures. This type of model accounts for the highly heterogeneous hydraulic conductivity and groundwater fluxes in fractured‐rock aquifers, and facilitates designing injection strategies that target specific volumes of the aquifer and maximize the distribution of amendments over these volumes.     

Demersal fish and habitat associations from visual surveys on the central California shelf

In 2004, we surveyed demersal fishes and habitats on the continental shelf off central California (65–110 m depth) using the occupied submersible Delta. Our objectives were to estimate the relative abundance of habitats and to examine demersal fish species composition, diversity, density, and sizes relative to these habitats. A total of 112 transects were completed covering 32 km of seafloor. A higher density of fishes was estimated in boulder and cobble habitats than in mud and brachiopod beds. More than 80% of the fishes were small, measuring 20 cm or less in total length. Species with small maximum size (primarily pygmy rockfish, Sebastes wilsoni, and blackeye gobies, Rhinogobiops nicholsii) accounted for nearly half (49%) of the total number of 12,441 fishes. Most fishes were immature, with only 4 of 20 harvested species having more than 50% of the individuals larger than the size at first maturity. Our study area on the continental shelf may be an ontogenetic transition zone for immature fishes before they move to their adult habitat on the slope. Alternatively, historical fishing pressure may have contributed to the lack of large, mature fishes in the survey area. Understanding the importance of these habitats to fishes at various life stages will improve our ability to assess these deepwater fish stocks and effectively manage these living resources on an ecosystem basis.     

Sedimentary and foraminiferal records of Late Quaternary environmental change west of Ireland and implications for the last British–Irish Ice Sheet

Palaeoenvironmental change following deglaciation of the last British–Irish Ice Sheet on the continental shelf west of Ireland was investigated using multiproxy analyses of sediment and foraminifera data from nine sediment cores. Lithofacies associations record various depositional regimes across the shelf, which evolve from subglacial to postglacial conditions. Census data provide the first characterisation of benthic foraminifera populations across the continental shelf and multivariate analyses reveal three distinct biotopes. Biomineralization within these biotopes is restricted to ≤21 200 cal a bp by four radiocarbon ages. The transition from glacial to postglacial benthic foraminifera populations near the shelf break marks the establishment of productive, nutrient-rich, ice-distal conditions at ~20 900 cal a bp ; these conditions may also mark the start of favourable conditions for postglacial cold-water coral growth. Postglacial conditions on the inner shelf were not established until <14 500 cal a bp , suggesting glacial conditions west of Ireland may have persisted into the Bølling–Allerød Interstadial.     

Observations of the Ca <Emphasis Type="SmallCaps">ii</Emphasis> IR Triplet in High Luminosity Quasars: Exploring the Sample

We present a new spectroscopic sample of 11 quasars at intermediate redshift observed with the Infrared Spectrometer and Array Camera (ISAAC) on the ESO Very Large Telescope (VLT), covering O i λ8446 and the Ca ii triplet 8498, 8542, 8662. The new observations – that supplement the sample presented by Martínez-Aldama et al. (2015) – allow us to confirm the constraints on physical conditions and location of the region emitting the low ionization lines, as well as the relation between Ca ii and Fe ii.