Cytochrome P-450 isozymes in salmonids determined with antibodies to purified forms of P-450 from rainbow trout

Purification of cytochromes P-450 from liver microsomes of β-naphthoflavone (BNF)-fed rainbow trout yielded three apparently homogeneous forms. The major form (LM_4b)^* appears to be a P-448 type of cytochrome. A minor form (LM_4a), having properties very similar to LM_4b, was also obtained. In addition, a P-450 form (LM₂) was isolated, with properties quite different from LM_4a or LM_4b, including a high rate of aflatoxin B₁ (AFB₁) metabolism (Williams & Buhler, 1983c). Antibodies to all three forms were obtained from rabbits. The IgGs prepared against LM_4a and LM_4b both cross-reacted (forming lines of identity) equally well with both antigens on Ouchterlony plates. Rat P-448 cross-reacted (without lines of identity) with both LM_4a- and LM_4b-IgG. LM_4b-IgG was much more effective than LM_4a-IgG for inhibition of LM_4a or LM_4b reconstituted benzo[a]pyrene (BP) hydroxylase, suggesting that these two antibodies recognize different antigenic sites. The LM₂-IgG did not cross-react with any of the other rat or trout cytochromes P-450 examined. Levels of LM₂ and LM_4b in microsomes from untreated, polychlorinated biphenyl (PCB), phenobarbital (PB) or BNF-treated trout were estimated with an immunological technique involving electrophoresis on SDS-PAGE, followed by transfer to nitrocellulose and staining with either LM ₂ - or LM_4b -IgG. The ratio of in microsomes from PCB- or BNF-treated rainbow trout was much higher than 1, whereas the reverse was true with microsomes from untreated rainbow trout. These results are consistent with previous observations (Vodicnik et al., 1982) that pretreatment with BNF induced the synthesis of a P-448 type cyytochrome, presumably responsible for the great increase in the metabolism and activation of BP seen in these fish. Conversely, pretreatment with PB did not affect the levels of either LM₂ or LM_4b. This specific immunological technique should make it possible to assay the levels of these P-450 and P-448 isozymes in various strains of rainbow trout and other species of fish. In addition, the effect of age, sex, diet and exposure to P-450 and P-448 inducers could be examined and, perhaps, utilized to predict the relative risk of certain populations to pollutants activated by these different isozymes.     

Implementation of PhotoZ under Astro-WISE

We describe the implementation of the PhotoZ code in the framework of the Astro-WISE package and as part of the Photometric Classification Server of the PanSTARRS pipeline. Both systems allow the automatic measurement of photometric redshifts for the millions of objects being observed in the PanSTARRS project or expected to be observed by future surveys like KIDS, DES or EUCLID.     

Early diagenesis in sediments from the eastern equatorial Pacific,I. Pore water nutrient and carbonate results

Interstitial waters were extracted from cores at three locations in the eastern equatorial Pacific and analyzed for nutrients, dissolved carbonate species, Mn and Fe. From the depth variation in pore water chemistry, we infer that organic matter oxidation reactions occur with depth in the following sequence: O₂ reduction, NO₃^? and MnO₂ reduction, and then ferric iron reduction. From NO₃^? results we infer that O₂ is largely or totally consumed within the top few centimeters of sediment. NO₃^? is completely reduced at a sediment depth of 20 cm at a site near the crest of the East Pacific Rise, but is preserved at levels of 20–30 μmol/kg at 40 cm depth at a Guatemala Basin site.We have calculated the alkalinity for pore water samples assuming ions diffuse according to relative ionic diffusion coefficients, that the stoichiometry of organic matter oxidation reactions is that of “Redfield” organic matter, and that the pore waters are saturated throughout with respect to CaCO₃. The measured alkalinity increase is only about half of the predicted value. The difference is probably a result of either enhanced mixing of the pore water in the top few centimeters of sediments by biological or physical processes, or the occurrence of an inorganic reaction which consumes alkalinity.At depths of oxygen and nitrate reduction in the sediments, the ion concentration product of CaCO₃ is the same, within the analytical error, as the solubility product of Ingle et al. [34] at 1 atm and 4°C. This result indicates CaCO₃ resaturation on pressure change during coring. Where pore water Mn concentrations become measurable, the ion concentration product increases, indicating either supersaturation with respect to calcite or that another phase is controlling the carbonate solubility.     

Magnetic properties of feroxyhyte (δ-FeOOH)

Magnetization curves and high-field Mössbauer spectra are used to deduce a model for the magnetic order in synthetic samples of δ-FeOOH (feroxyhyte), which takes account of the changes in magnetization when the samples are heated at 105 °C. Feroxyhyte is essentially a planar antiferromagnet with the net sublattice moments aligned parallel or antiparallel to c. Each particle acquires a net moment due to the very small number of layers along the c-direction, and the presence of surface steps causing the formation of ferrimagnetic domains with an odd number of layers. There is some spin canting which is related to the crystallinity of the sample. The decrease in magnetization following heating is mainly due to an increase in the extent of antiferromagnetic coupling between the closely packed ferrimagnetic particles, but changes in the spin canting within the bulk may also contribute. A typical, rather well crystallized specimen has magnetization σ=14 JT^?1 kg^?1 and Curie temperature T _c=455 K.     

Chemical and isotopic constraints on the generation and transport of magma beneath the East Pacific Rise

Interpretation of U-series disequilibria in midocean ridge basalts is highly dependent on the bulk partition coefficients for U and Th and therefore the mineralogy of the mantle source. Distinguishing between the effect of melting processes and variable source compositions on measured disequilibria (²³⁸U-²³⁰Th-²²⁶Ra and ²³⁵U-²³¹Pa) requires measurement of the radiogenic isotopes Hf, Nd, Sr, and Pb. Here, we report measurements of ²³⁸U-²³⁰Th-²²⁶Ra and ²³⁵U-²³¹Pa disequilibria; Hf, Nd, Sr, and Pb isotopic; and major and trace element compositions for a suite of 20 young midocean ridge basalts from the East Pacific Rise axis between 9°28′ and 9°52′N. All of the samples were collected within the axial summit trough using the submersible Alvin. The geological setting and observational data collected during sampling operations indicate that all the rocks are likely to have been erupted from 1991 to 1992 or within a few decades of that time. In these samples, ²³⁰Th excesses and ²²⁶Ra excesses are variable and inversely correlated. Because the eruption ages of the samples are much less than the half-life of ²²⁶Ra, this inverse correlation between ²³⁰Th and ²²⁶Ra excesses can be considered a primary feature of these lavas. For the lava suite analyzed in this study, ²²⁶Ra and ²³⁰Th excesses also vary with lava composition: ²²⁶Ra excesses are negatively correlated with Na₈ and La/Yb and positively correlated with Mg#. Conversely, ²³⁰Th excesses are positively correlated with Na₈ and La/Yb and negatively correlated with Mg#. Th/U, ²³⁰Th/²³²Th, and ²³⁰Th excesses are also variable and correlated to one another. ²³¹Pa excesses are large but relatively constant and independent of Mg#, La/Yb, Th/U, and Na₈. The isotope ratios ¹⁴³Nd/¹⁴⁴Nd, ¹⁷⁶Hf/¹⁷⁷Hf, ⁸⁷Sr/⁸⁶Sr, and ²⁰⁸Pb/²⁰⁶Pb are constant within analytical uncertainty, indicating that they were derived from a common source. The source is homogeneous with respect to parent/daughter ratios Lu/Hf, Sm/Nd, Rb/Sr, and Th/U; therefore, the measured variations of Th/U, ²³⁰Th, and ²²⁶Ra excesses and major and trace element compositions in these samples are best explained by polybaric melting of a homogeneous source, not by mixing of compositionally distinct sources.     

The role of topography,river size and riverbed grain size on the preservation of riverine mollusk shells

The degree to which a group of fossils reflects the original community from which it was derived can be estimated by comparing living communities with locally accumulated dead remains. Such live–dead approaches (LA/DA) can provide important baseline information on the ecological structure of ancient freshwater systems. This study explored variations in composition, richness, evenness and rank-abundance in live and dead mollusk assemblages recovered from the Ibicuí River Basin, southern Brazil. LA/DA was related to topography, river size, and sediment grain size, separated respectively into plain (altitude 0–100 m) versus slope (100–500 m), small versus medium-large stream orders, and gravel versus sand substrate. Positive correlation between LA and DA species composition was significant only in large rivers. Slope areas showed LA/DA species compositions that were significantly different, whereas the communities from sand and gravel substrates were quite similar. Important factors that affected live/dead similarity in the study area included (1) destruction of thin, fragile shells of dead animals by acidic waters that are common in the region, (2) downstream drift of small spherical shells from species common in slope areas, such as Potamolithus sp., and (3) high abundances of invasive species in the local death assemblage, especially in large rivers. High fidelity in large rivers is caused by the presence of favorable habitats for bivalve communities. Coarse sediments are an important driver of macro invertebrate diversity, acting as shell traps that slow the downstream drift of bivalve remains and improve the preservation of fluvial mollusks. The preservation potential of dead assemblages of the Ibicuí River showed that fossil assemblages are useful tools for recognizing ancient riverscapes, such as flat areas with sandy substrates.     

Genomic resources for the spotted ragged-tooth shark Carcharias taurus

Genomic data can be a useful tool in the management and conservation of biodiversity. Here, we report the development of genomic resources for the spotted ragged-tooth shark Carcharias taurus using genome-wide DNA data from Illumina next-generation sequencing. We explored two commonly used genetic marker types: microsatellites and mitochondrial DNA. A total of 4 394 putative microsatellites were identified, of which 10 were tested on 24 individuals and found to have ideal properties for population genetic analyses. Additionally, we reconstructed the first complete mitochondrial genome of a South African spotted ragged-tooth shark, and highlight the most informative gene regions to facilitate future primer design. The data reported here may serve as a resource for future studies and can ultimately be applied in the sustainable conservation and fisheries management of this apex predator.     

DENIS: A deep near-infrared survey of the southern sky

The DENIS project is the first attempt to carry out a complete digitized survey of the southern sky in the range 1–2.5µm. The main objectives of the programme and the main specifications of the camera and of the data processing stream are briefly outlined