青蛤(Cyclina sinensis)TLR2基因的克隆与表达分析

利用转录组文库分析得到青蛤(Cyclina sinensis)的Toll样受体2(Toll-like receptor 2,TLR2)基因序列,采用荧光定量PCR法分析该基因的表达过程。结果显示,青蛤TLR2基因的cDNA开放阅读框为2082bp,编码693个氨基酸,具典型的LRRs、单次跨膜区和TIR结构域。该基因在血淋巴中的表达量最高,与肝脏、鳃、外套膜、闭壳肌和性腺有显著性差异(P0.05)。在鳗弧菌和Poly I:C刺激下,青蛤血淋巴中TLR2基因3h开始升高,48h达到最大值,与对照组和空白组有极显著性差异(P0.01);藤黄微球菌刺激下,血淋巴中CsTLR2基因3h开始升高,48h亦达到最大值,实验组与对照组有显著性差异(P0.05)。     

凡纳滨对虾(Litopenaeus vannamei)Runt转录因子的基因克隆及其功能分析

Runt结构域转录因子家族(Runx)在哺乳动物体内存在三种基因型,分别起着造血,骨生成和控制上皮细胞增殖的作用。本文应用反转录和c DNA末端快速扩增(RACE)技术,首次在凡纳滨对虾(Litopenaeus vannamei)中克隆并测序了一种Runt(lvrunt)基因全长。lvrunt c DNA全长1754bp,含有1个663bp长的开放阅读框,编码221个氨基酸,理论分子量为23.6k Da,具有Runt-family结构域。对凡纳滨对虾鳃、肠、肝胰腺、类淋巴、心脏、肌肉组织和血淋巴lvrunt的转录特征进行分析,结果显示该基因几乎特异性地在血淋巴细胞中表达,而在其他组织中表达较低。肌肉注射重组造血激素蛋白(r AST)或白斑综合征病毒(WSSV)粗提液均可显著提高lvrunt在凡纳滨对虾体内的转录表达。上述结果提示,lvrunt主要在血细胞发挥作用,可能作为造血激素的下游基因起到调节血细胞增殖和分化的作用,并在受到病毒感染后,参与提升血细胞数量或者促进血细胞分化的过程。     

不同破碎波对沙质海床作用的实验研究

破碎波对近海海岸地形以及海岸建筑物影响强烈,通过物理模型实验对孤立波、规则波作用下破碎带的床面形态以及孔隙水压力进行分析。破碎波冲击海床,破碎处床面上形成沙坝和沙坑,与规则波相比,孤立波破碎时对床面的冲刷更加剧烈,床面形成的沙坝和沙坑尺度更大,且土体内孔隙水压力幅值也较大。同时研究了波面变化对孔隙水压力的影响,发现波面变化历时曲线与孔隙水压力历时曲线相似,与孔隙水压力梯度历时曲线更为相似,说明波面变化更能反映海床内部孔隙水压力梯度的变化。通过探讨波浪与海床之间相互耦合作用,发现破碎带地形变化使得波浪出现不同破碎类型,分析得出卷破波比崩破波作用下孔隙水压力幅值大。     

Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China

The chloroplast and mitochondrion of red algae （Phylum Rhodophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lin-eages by using red algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Rhodophyta. We have found that red algae were divided into three clades of orders, Florideophyceae, Bangiophyceae and Cyanidiophyceae. Taxonomy resolution for Class Florideophyceae showed that Order Gigartinales was close to Order Halymeniales, while Order Graci-lariales was in a clade of Order Ceramials. We confirmed Prionitis divaricata （Family Halymeniaceae） was closely related to the clade of Order Gracilariales, rather than to genus Grateloupia of Order Halymeniales as reported before. Furthermore, we found both mitochondrial and chloroplastic genes in Rhodophyta under negative selection （Ka/Ks〈1）, suggesting that red algae, as one primitive group of eukaryotic algae, might share joint evolutionary history with these two organelles for a long time, although we identified some dif-ferences in their phylogenetic trees. Our analysis provided the basic phylogenetic relationships of red algae, and demonstrated their potential ability to study endosymbiotic events.     

基于阈值区间的海洋锋面提取模型

A model （Bayesian oceanic front detection, BOFD） of sea surface temperature （SST） front detection in satel- lite-derived SST images based on a threshold interval is presented, to be used in different applications such as climatic and environmental studies or fisheries. The model first computes the SST gradient by using a Sobel algorithm template. On the basis of the gradient value, the threshold interval is determined by a gradi- ent cumulative histogram. According to this threshold interval, front candidates can be acquired and prior probability and likelihood can be calculated. Whether or not the candidates are front points can be deter- mined by using the Bayesian decision theory. The model is evaluated on the Advanced Very High-Resolution Radiometer images of part of the Kuroshio front region. Results are compared with those obtained by using several SST front detection methods proposed in the literature. This comparison shows that the BOFD not only suppresses noise and small-scale fronts, but also retains continuous fronts.     

渤海莱州湾地区晚更新世以来有孔虫特征反映的古环境变化

Controlled by climate changes, there were three large-scale transgressions and regressions around the Bohai Sea during the late Quaternary, which were accepted by most geologists. However, a big controversy still exists about the time when the transgressions occurred separately. In order to find out the process of the paleoenvironmental changes around the Bohai Sea in the late Quaternary, the foraminifera assemblages from a new borehole Lz908 in the southern coast of the Laizhou Bay were studied, and then the transgressive strata were indentified. Combined with accelerator mass spectrometry radiocarbon 14C（AMS14C） and optically stimulated luminescence（OSL） ages, the occurrence time of these transgressions were re-determined. The result showed that three major large-scale transgressions occurred separately at the beginning of marine isotopic stage 7（MIS7）, the last interglacial period（MIS5） and the Holocene. In addition, a small-scale transgression occurred in the mid-MIS6, and the corresponding transgressive stratum was deposited. The transgressive deposition of MIS3 was also discovered in this study. However, the characteristics of the foraminifera indicated the environment during this period was colder than that in the MIS5. By comparison with the global sea-level changes, the paleoenvironmental changes around the Bohai Sea in the late Quaternary can be consistent with the global climate changes.     

褐藻多糖硫酸酯对脂多糖诱导大鼠肾小球系膜细胞NO产生量的影响

慢性肾衰的进程中伴随着肾脏炎症的发生,研究表明褐藻多糖硫酸酯具有抗炎作用,且对于慢性肾衰的早期治疗具有一定的作用。本文通过脂多糖(lipopolysaccharide,LPS)诱导,建立大鼠肾小球系膜细胞的炎症模型,用来源于海带的高分子质量褐藻多糖硫酸酯F1和低分子质量褐藻多糖硫酸酯F2对细胞进行处理,24 h后MTT法检测各组细胞活力,Griess法检测24 h及48 h后细胞培养液中NO的含量。结果表明,各组间细胞活力无明显差异;脂多糖可以诱导大鼠肾小球系膜细胞NO产量增加,F1和F2均可在一定程度上抑制脂多糖诱导的NO产量的增加,从而减轻细胞炎症反应。剂量为25μg/m L的F1和F2处理细胞48 h后,与模型组相比,F1和F2组细胞培养液中NO含量分别下降22.52%和38.65%,低分子质量褐藻多糖硫酸酯抗炎效果明显高于高分子质量褐藻多糖硫酸酯。     

基于T213集合预报的延伸期产品释用方法及初步试验

基于T213集合预报系统2008年1月中国及附近区域500 hPa高度和850 hPa温度的1~15 d预报资料,构建延伸期产品释用方法,通过对逐日11~15 d预报资料做集合平均和后向衰减权重系数滑动平均,进而得到延伸期(11~15 d)候平均和候距平预报,并对预报效果进行检验,结果表明:对11~15 d预报场做集合平均和后向衰减权重系数滑动平均均能降低预报误差,改善整体预报效果。由此得到的500 hPa高度场和850 hPa温度场11~1 5 d候平均预报误差与逐日控制预报第5d的水平相当,候距平相关系数均接近0.6,整体而言效果较好,具备一定的应用价值。500 hPa高度场和850 hPa温度场11~15 d候距平预报在中国大陆地区位相准确率均较高,东南沿海和东北部分地区稍差,且850 hPa温度场的位相准确率整体高于500 hPa高度场。候距平预报对延伸期(11~15 d)的大范围持续性异常距平具有较强的捕捉能力,对异常距平出现的范围和分布、强距平中心的位置的预报均较好,但强度整体偏弱。