Cannibalistic viruses in the aquatic environment: role of virophages in manipulating microbial communities

The ecological role of viruses in aquatic environments is gaining interest due to their abundance and overall diversity. Much focus has been on bacteriophages since they were found to play an important role in the diversification and sustainment at both the micro- and macro-scale. However, the discovery of virophages coexisting with giant viruses in a diverse set of eukaryotic hosts has recently gained attention. Virophages are small double-stranded DNA viruses found parasitizing giant viruses of eukaryotes. Since the discovery of the first virophage (Sputnik) many virophage signatures have been detected from a variety of environmental samples with specific infection cycles. In addition, these parasites display important roles in equilibrating microbial biomass, nutrient cycling and population dynamics. Moreover, virophage-induced evolution between giant viruses and their hosts have also been described. Considering the ongoing discovery of virophages and their dynamics in aquatic ecosystems, this review intends to provide an update of the virophage signatures identified to date, also tending to provide insight on the mechanisms of coinfection as well as their role as agents of biodiversity and nutrient cyclers in water environments.     

应用两次展开法求解系泊柱体慢漂运动方程

在深海中系泊的海洋平台,如Spar平台,水下部分为带有系泊的圆柱结构,其水平方向运动响应往往具有较低的自振频率,容易在低频波浪力(源于非线性的差频效应)作用下发生共振响应,使结构发生大幅水平慢漂。当浮体的瞬时位置大幅偏离初始位置时,基于初始平衡位置的摄动展开法会存在较大误差。针对这一问题,采用两次展开方法,对大幅慢漂运动开展时域模拟研究。对双色波作用下自由漂浮圆柱的大幅运动响应问题进行数值分析,并与采用基于初始平衡位置的摄动展开法的计算结果进行了对比。结果表明,采用新的两次展开法可以计算出波浪遭遇频率的变化和波浪漂移阻尼,而这无法从基于初始平衡位置的常规摄动展开法中得到,体现了两次展开法在分析大幅慢漂问题上的优势。     

Hybrid N-order Lagrangian Interpolation Eulerian?Lagrangian Method for Salinity Calculation

The Eulerian?Lagrangian method (ELM) has been used by many ocean models as the solution of the advection equation, but the numerical error caused by interpolation imposes restriction on its accuracy. In the present study, hybrid N-order Lagrangian interpolation ELM (LiELM) is put forward in which the N-order Lagrangian interpolation is used at first, then the lower order Lagrangian interpolation is applied in the points where the interpolation results are abnormally higher or lower. The calculation results of a step-shaped salinity advection model are analyzed, which show that higher order (N=3?8) LiELM can reduce the mean numerical error of salinity calculation, but the numerical oscillation error is still significant. Even number order LiELM makes larger numerical oscillation error than its adjacent odd number order LiELM. Hybrid N-order LiELM can remove numerical oscillation, and it significantly reduces the mean numerical error when N is even and the current is in fixed direction, while it makes less effect on mean numerical error when N is odd or the current direction changes periodically. Hybrid odd number order LiELM makes less mean numerical error than its adjacent even number order LiELM when the current is in the fixed direction, while the mean numerical error decreases as N increases when the current direction changes periodically, so odd number of N may be better for application. Among various types of Hybrid N-order LiELM, the scheme reducing N-order directly to 1st-order may be the optimal for synthetic selection of accuracy and computational efficiency.     

The Sediment Source and Transport Trends around the Abandoned Yellow River Delta,China

Sediment source and transport trends are influenced by various hydrodynamic factors, and thus play important roles in sedimentary evolution and coastal stability. To examine sediment transport trends around the abandoned Yellow River delta promontory and its erosion mechanism, we employ empirical orthogonal function (EOF) analysis to study sedimentary characteristics and transport trends of the abandoned Yellow River delta in northern Jiangsu Province, China. The results showed that: (1) the main sediment source in the abandoned Yellow River delta is the submarine coastal slope and both sides of the abandoned Yellow River Delta; (2) the main hydrodynamics controlling sediment transport is the current that runs along the shore, coupled with waves, especially southward currents; (3) the sediment of the study area was redistributed under hydrodynamics; coarse sediments were eroded and broadly transported to the south. Therefore, it is concluded that the sediment sources and transport have important influence on coastal evolution: the sediment source area shows mass loss of deposits and erosion; deposits in the submarine coastal slope provide the source and were continuously eroded to provide materials to other places as a sediment source.     

管状蠕虫Ridgeia piscesae TAK1的克隆及其转基因果蝇制备

Ridgeia piscesae是唯一一种存在于东北太平洋Juan de Fuca Ridge热液区的管状蠕虫,我们成功通过RACE PCR获得Ridgeia piscesae TAK1(Rp TAK1)基因全长c DNA序列.为深入研究TAK1基因在管状蠕虫中的作用,本文通过显微注射获得Rp TAK1转基因果蝇,并在果蝇体内成功过表达Rp TAK1基因.我们发现由Rp TAK1编码的氨基酸序列具有一定保守性,可能暗示其功能上的保守性,同时也暗示TAK1蛋白在物种进化中的保守性.而过表达突变体果蝇的眼睛出现变异,包括眼睛变得粗糙、单眼排列不整齐及整体形状变小,可以看出Rp TAK1基因影响果蝇的机体发育,我们猜测在Rp TAK1基因在管状蠕虫的生长发育过程中也可能起到重要作用.     

Dynamics and responses of vegetation to climatic variations in Ziya-Daqing basins,China

Examining the direct and indirect effects of climatic factors on vegetation growth is critical to understand the complex linkage between climate change and vegetation dynamics. Based on the Moderate Resolution Imaging Spectroradiometer(MODIS) Normalized Difference Vegetation Index(NDVI) data and meteorological data(temperature and precipitation) from 2001 to 2012, the trend of vegetation dynamics were examined in the Ziya-Daqing basins, China. The path analysis was used to obtain the information on the relationships among climatic factors and their effects on vegetation growth. It was found that the trends of growing season NDVI were insignificant in most plain dry land, while the upward trends were significant in forest, grass and dry land in Taihang Mountains. According to the path analysis, in 23% of the basins the inter-annual NDVI variation was dominated by the direct effect of precipitation, in 5% by the direct effects of precipitation and temperature, and in less than 1% by the direct effect of temperature or indirect effects of these two climatic factors. It indicated that precipitation significantly affected the vegetation growth in the whole basins, and this effect was not regulated by temperature. Precipitation increase(especially in July, August and September) was favorable to greenness enhancement. Summer temperature rising showed negative effect on plant productivity enhancement, but temperature rise in April was beneficial for the vegetation growth. When April temperature increases by 1℃, the onset date of greenness for natural vegetation will be 2 days in advance. There was a lag-time effect of precipitation or temperature on monthly NDVI for all land use types except grass.     

Influencing factors of seed long-distance dispersal on a fragmented forest landscape on Changbai Mountains,China

Seed long-distance dispersal(LDD) events are typically rare, but are important in the population processes that determine large-scale forest changes and the persistence of species in fragmented landscapes. However, previous studies focused on species dispersed via animal-mediated LDD, and ignored those dispersed by wind. The aim of this study was to assess the effects of canopy openness, edge, seed source, and patch tree density on the LDD of seeds by wind in forest. We collected birch seeds, a typical wind-dispersed species, throughout a larch plantation. We then assessed the relationship between birch LDD and each factor that may influence LDD of seeds by wind including distance to edge, canopy openness size, distance to mature forest, and the tree density of the larch plantation. We used univariate linear regression analysis to assess the influence of those factors on birch LDD, and partial correlations to calculate the contribution of each factor to LDD. The results showed that both canopy openness and edge had significant influences on birch LDD. Specifically, a negative relationship was observed between distance to edge and birch LDD, whereas there was a positive correlation between canopy openness size and LDD. In contrast, the distance to the mature forest was not correlated with birch LDD. Our results suggest that patch tree density could potently affect the probability of LDD by wind vectors, which provides novel and revealing insights regarding the effect of fragmentation on wind dynamics. The data also provide compelling evidence for the previously undocumented effect of habitat fragmentation on wind-dispersed organisms. As such, these observations will facilitate reasonable conservation planning, which requires a detailed understanding of the mechanisms by which patch properties hamper the delivery of seeds of wind-dispersed plants to fragmented areas.