Closely related thyasirid bivalves associate with multiple symbiont phylotypes

Species of thyasirid bivalves are considered to be representative of early stages of chemosymbiosis, given that bacterial symbionts occur outside gill epithelial cells, vary among species in their abundance and nutritional importance, and are environmentally acquired. For these reasons, assessing the extent of host–symbiont specificity in thyasirids could provide valuable information on the evolution of chemosymbiosis. We show that individuals of two closely related and sympatric Thyasira cf. gouldi operational taxonomic units collected from three sites in a fjord in Newfoundland, Canada, associate with one of three distinct, closely related symbiont phylotypes. While associations show some site‐specificity, there is flexibility in host–symbiont pairings within the fjord, further supporting an early and relatively unspecific stage of chemosymbiosis in this family. Morphologic differences observed both within and among symbiont phylotypes suggest physiologic variation, possibly induced by small‐scale differences in sedimentary conditions.     

Dereverberation of marine reflection seismic data by a spatial combination of predictive deconvolution and velocity filtering

Contamination of seismic reflection records at early times by first-order water reverberations can be especially severe during survey operations over hard and flat sea floors on the continental shelf or in lake environments. A new dereverberation scheme based on two classical techniques — predictive deconvolution and velocity filtering — has been developed to address this problem. The techniques are combined spatially to take advantage of their complementary offset- and time-dependent properties. Stage I of the scheme consists of applying predictive deconvolution at short offset. The data are previously conditioned by a normal moveout correction with the water velocity which restores the periodicity of the reverberations in the offset-time plane and enhances the performance of deconvolution. Stage II of the scheme involves velocity filtering in the common-midpoint domain which is particularly effective at long offset where the moveout difference between primary reflections and reverberations is largest. The dereverberation scheme is well suited for the initial processing of large volumes of data due to the general availability of cost-effective deconvolution and velocity filtering algorithms in seismic processing software packages. Practical implementation issues are illustrated by a field example from the GLIMPCE survey in Lake Superior.Lithoprobe Publication No. 475.     

Response of juvenile lemon sharks, Negaprion brevirostris, to a magnetic barrier simulating a beach net

Beach nets are preventative devices used to minimize interactions between potentially harmful sharks and unsuspecting swimmers. Quantitative studies demonstrated that beach nets drastically reduced local elasmobranch populations, as well as caused considerable bycatch mortality. For this experiment, a beach net-like device was constructed and the behaviors of six juvenile lemon sharks (Negaprion brevirostris) were analyzed. Induced by olfactory and gustatory cues, sharks were given the choice to swim through a magnetic or control opening in the net. In the first trial, all six sharks avoided the magnetic region and significantly preferred to swim through the control region of the fence. The magnetic stimulus no longer affected the swimming behavior of three sharks retested after resting 24 h. Results from the retested sharks were correlated with those from repeated tonic immobility trials, which demonstrated a linear decrease in sensitivity to repeated magnetic stimulation. This study serves as a baseline experiment demonstrating that permanent magnets may substantially decrease elasmobranch mortality within beach nets.     

Interannual variability in vertical export in the Ross Sea: Magnitude, composition, and environmental correlates

The vertical flux of particulate matter from the surface of the Ross Sea, Antarctica, has been suggested as being large, with substantial seasonal and spatial variations. We conducted a study in which vertical flux was quantified using sediment traps deployed at 200 m and compared to estimates calculated from one-dimensional budgets of nutrients (nitrogen and silicon). Estimates of flux were collected at two locations in the southern Ross Sea from late December to early February during four years: 2001-2002, 2003-2004, 2004-2005, and 2005-2006. Phytoplankton biomass and vertical flux varied substantially seasonally and spatially between the two sites, and among years. The greatest flux was observed in 2001-2002, with a short-term maximum organic carbon flux of 3.13 mmol m⁻² d⁻¹, and the summer mean organic carbon flux equal to 0.93 mmol m⁻² d⁻¹. In contrast, the mean carbon flux at the same site in 2003-2004 was over an order of magnitude less, averaging 0.19 mmol m⁻² d⁻¹, despite the fact that productivity in that year was substantially greater. In 2005-206 the contribution of fecal pellets to flux was smallest among all years, and the pellet contribution ranged from <1 to more than 50% of organic flux. As the moorings also had surface layer fluorometers, the relationship between surface biomass and sediment trap flux was compared. Temporal lags between surface fluorescence and flux at 200 m maxima in 2003-2004 and 2004-2005 ranged from two to six days; however, in 2005-2006 the temporal offset between biomass and flux was much longer, ranging from 11 to 27 days, suggesting that fecal pellet production appeared to increase the coupling between flux and surface production. Estimates of export from the upper 200 m based on one-dimensional nutrient budgets were greater than those recorded by the sediment traps. Nutrient budgets also indicated that siliceous production averaged ca. 40% of the total annual production. The variations observed in the flux of biogenic matter to depth in the Ross Sea are large, appear to reflect different forcing among years, and at present are not adequately understood. However, such variability needs to be both understood and represented in biogeochemical models to accurately assess and predict the effects of climate change on biogeochemical cycles.     

Inter-basin movements of Mediterranean sperm whales provide insight into their population structure and conservation

The sperm whale is one of the very few deep diving mammal species in the Mediterranean Sea. Following a rare mass stranding of male sperm whales in the Adriatic Sea in December 2009, photo-identification methods were used in order to investigate previous sightings of the stranded whales in the region. Fluke photos of the stranded whales were compared with those of 153 and 128 free-ranging individuals photographed in the western and eastern Mediterranean basins, respectively. Three out of the seven stranded whales had been previously photo-identified and some of them more than once. To reach the stranding place, two of these re-identified whales performed long-range inter-basin movements of about 1600-2100 km (in a straight line) either through the Strait of Sicily or the Strait of Messina. In addition, comparisons among all whales photographed in the two Mediterranean basins revealed that one more individual first photographed in the western basin (1991) was re-identified 13 years later in the eastern basin (2004). These three cases provide the first conclusive evidence of inter-basin movement of sperm whales in the Mediterranean Sea. Inter-basin gene flow is important for the survival of the small and endangered Mediterranean sperm whale population. Mitigating the disturbance created by human activities in the straits area is crucial for its conservation.     

Nitrogen uptake and primary productivity rates in the Mid-Atlantic Bight (MAB)

Nutrient concentrations, primary productivity, and nitrogen uptake rates were measured in coastal waters of the Mid-Atlantic Bight over a two-year period that included measurements from all four seasons. In order to assess carbon productivity and nitrogen demand within the context of the physical environment, the region was divided into three distinct hydrographic regimes: the Chesapeake and Delaware Bay outflow plumes (PL), the southern Mid-Atlantic shelf influenced by the Gulf Stream (SS), and the mid-shelf area to the north of the Chesapeake Bay mouth (MS). Annual areal rates of total nitrogen (N) uptake were similar across all regions (10.9 ± 2.1 mol N m⁻² y⁻¹). However, annual areal rates of net primary productivity were higher in the outflow plume region (43 mol C m⁻² y⁻¹), than along the Mid-Atlantic shelf and in areas influenced by the Gulf Stream (41 and 34 mol C m⁻² y⁻¹, respectively). Rates of net primary productivity were not well correlated with Chl a concentrations and were uncoupled with net N uptake rates. Seasonally averaged annual areal rates of net primary productivity for the Mid-Atlantic Bight measured in this study were higher than those calculated in previous decades and provide important validation information for biogeochemical models and satellite remote sensing algorithms developed for the region.     

Study of the motions of fishing vessels by a time domain panel method

In this paper, a wide variety of computed motion results is presented for three existing fishing vessels. In order to do that, time domain computations of 3D ship motions are performed with a time domain Green's function. The computational method adopted is based on a previously developed one, whose numerical scheme here is subjected to modifications that increase its robustness and overall efficiency, so that it can be applied to calculate the motions of fishing vessels. The results are then compared with simulations using WAMIT for the zero speed case, and a strip theory method is used to determine the effect of forward speed. Results are presented for head seas, quartering head waves and following waves with three distinct Froude numbers.     

Live (stained) benthic foraminifera from the Rhône prodelta (Gulf of Lion,NW Mediterranean): Environmental controls on a river-dominated shelf

In this paper, we investigate the ecology of live (rose Bengal stained) benthic foraminifera collected at 20 stations ranging from 15 to 100 m depth in the Rhône prodelta (Gulf of Lions, NW Mediterranean). These sites were sampled in September 2006, five months after the Rhône River annual flood. Statistical analyses based on foraminiferal communities (> 150 μm) divide our study area into six main biofacies directly related to environmental conditions. Miliolid species are abundant in the relict prodeltaic lobe which is characterised by sand with low organic matter content. Close to the river mouth, the limited oxygen penetration in the sediment combined with important hydro-sedimentary processes constitute stressful conditions for foraminiferal faunas dominated by opportunistic species (e.g. Leptohalysis scottii). With increasing distance from the river mouth, foraminiferal faunas (e.g. Nonionella turgida, Eggerella scabra) adapted to thrive in sediments enriched in Rhône-derived organic matter under more stable hydro-sedimentary conditions appear. In the distal part of the Rhône River influence, benthic species (e.g. Valvulineria bradyana, Textularia agglutinans) living in fine sediment enriched in both continental and marine organic compounds emerge. At the deepest stations located in the south-eastern part of our study area, benthic foraminiferal faunas (e.g. Bulimina aculeata, Melonis barleeanus, Bigenerina nodosaria) are highly diverse, underlining stable environmental conditions characterised by marine-derived organic matter supplies and relatively deep oxygen penetration depth in the sediment. We also compare foraminiferal faunas sampled in September 2006 with communities sampled in June 2005, one month after the Rhône River annual flood (Mojtahid et al., 2009). This comparison suggests that opportunistic species (e.g. B. aculeata, Cassidulina carinata, V. bradyana) have responded to organic matter inputs related to marine primary production in June 2005.