The dynamic behaviour of a river-dominated tidal inlet, River Murray, Australia

Australia's largest river, the River Murray, discharges to the southern ocean through a coastal lagoon and river-dominated tidal inlet. Increased water extractions upstream for irrigation have led to significantly reduced flows at the mouth and, as a result, the area is undergoing rapid change, particularly with regard to the rate at which sediment is being transported into the lagoon. Based on detailed and accurate bathymetric surveys it has been possible to estimate that the rate of lagoon in-filling is of the order of 100,000 m³ per year for the period June 2000 to May 2003, although the actual rate shows significant year to year variability. Dredging of the lagoon commenced in 2000 in an attempt to reverse the trend.In an effort to understand the behaviour of the inlet a one-dimensional numerical model of the inlet has been developed. The model extends the original of van de Kreeke by including a dynamic inlet throat area based on predicted river flows and a sediment transport module to predict the resulting net sediment transport. Comparisons with water level data collected on both the ocean and lagoon sides of the mouth have shown that the model is able to predict the attenuation and lag of the tidal signal reasonably well. The sediment transport model was based on predicted sediment concentrations in the surf zone and was found to predict the rate of sediment in-filling to an acceptable level of accuracy. It is envisaged that the model will be a useful management tool, especially since it is possible to manipulate river discharges to the mouth.     

Assessment of cytochrome P450 1A in harbour seals (Phoca vitulina) using a minimally-invasive biopsy approach

Biomarkers of organochlorine exposure, such as the induction of cytochrome P450 1A (CYP1A), can be used to assess the impact of environmental contaminants on the health of free-ranging marine mammal populations. The objective of the present study was to measure CYP1A in skin and liver biopsies obtained from live harbour seals (Phoca vitulina). Twelve harbour seal pups, aged three to five weeks, were captured from the Fraser River estuary, British Columbia, Canada, and temporarily held in captivity. Skin ( approximately 60 mg) and liver ( approximately 40 mg) biopsies, obtained while seals were under general anaesthesia, yielded sufficient tissue for the measurement of CYP1A by immunoblot analysis and ethoxyresorufin O-deethylase activity. A short-term exposure experiment, in which harbour seals (n=3) were treated orally with beta-naphthoflavone (BNF), resulted in increased hepatic and cutaneous CYP1A protein levels, consistent with observations in other mammals. This study is the first to measure CYP1A in skin and liver biopsies from live harbour seals and to report in vivo BNF-associated CYP1A induction in a marine mammal. The results demonstrate that microsamples collected using minimally-invasive techniques can provide toxicologically-relevant information form marine mammals.     

Design of a 3D Chirp Sub-bottom Imaging System

Chirp sub-bottom profilers are marine acoustic devices that use a known and repeatable source signature (1–24 kHz) to produce decimetre vertical resolution cross-sections of the sub-seabed. Here the design and development of the first true 3D Chirp system is described. When developing the design, critical factors that had to be considered included spatial aliasing, and precise positioning of sources and receivers. Full 3D numerical modelling of the combined source and receiver directivity was completed to determine optimal source and receiver geometries. The design incorporates four source transducers (1.5–13 kHz) that can be arranged into different configurations, including Maltese Cross, a square and two separated pairs. The receive array comprises 240 hydrophones in 60 groups whose group-centres are separated by 25 cm in both horizontal directions, with each hydrophone group containing four individual elements and a pre-amplifier. After careful consideration, it was concluded that the only way to determine with sufficient accuracy the source–receiver geometry, was to fix the sources and receivers within a rigid array. Positional information for the array is given by a Real Time Kinematic GPS and attitude system incorporating four antennas to give position, heading, pitch and roll. It is shown that this system offers vertical positioning accuracy with a root-mean-square (rms) error less than 2.6 cm, while the horizontal positioning rms error was less than 2.0 cm. The system is configured so that the Chirp source signature can be chosen by software aboard the acquisition vessel. The complete system is described and initial navigational and seismic data results are presented. These data demonstrate that the approach of using fixed source-receiver geometry combined with RTK navigation can provide complete 3D imaging of the sub-surface.     

Impact of urban stormwater runoff on estuarine environmental quality

Urban stormwater runoff could contribute to the deterioration of water quality of a receiving water body. In this research, field studies and laboratory experiments were conducted to assess the microbial contamination resulting from urban stormwater runoff into the Lake Pontchartrain estuary. Fecal coliform, Escherichia coli and enterococci were used as indicator organisms. The specific objectives of the research were to examine the distribution of the indicator organisms in different environmental elements (water column, suspended particles and sediment) and to further investigate the mechanisms related to their fate. Results of the research indicated satisfactory water quality at the study sites during dry weather periods. However, a significant increase was observed in the concentrations of the indicator organisms in the water columns and sediment at specific study sites following a given stormwater event. Three to seven days were needed for the elevated indicator organisms to return back to their background levels in the water column and sediment, respectively. The mechanism of sedimentation contributed to a reduction in the microbial concentration in the water column, as the indicator organisms were found to attach to the suspended particles in the stormwater. The percentage of fecal coliform, E. coli and enterococci attached to the suspended particles was found to be within the range of 9.8–27.5%, 21.8–30.4%, and 8.4–11.5% of the total indicator organisms in the stormwater loaded into the estuary, respectively. About 75–80% of the total indicator organisms remained free-floating for some distance in the water column before dying off.     

Variability of organic δC and C/N in the Mersey Estuary, U.K. and its implications for sea-level reconstruction studies

Microfossil analysis (e.g. diatoms, foraminifera and pollen) represents the cornerstone of Holocene relative sea-level (RSL) reconstruction because their distribution in the contemporary inter-tidal zone is principally controlled by ground elevation within the tidal frame. A combination of poor microfossil preservation and a limited range in the sediment record may severely restrict the accuracy of resulting RSL reconstructions. Organic δ¹³C and C/N analysis of inter-tidal sediments have shown some potential as coastal palaeoenvironmental proxies. Here we assess their viability for reconstructing RSL change by examining patterns of organic δ¹³C and C/N values in a modern estuarine environment. δ¹³C and C/N analysis of bulk organic inter-tidal sediments and vegetation, as well as suspended and bedload organic sediments of the Mersey Estuary, U.K., demonstrate that the two main sources of organic carbon to surface saltmarsh sediments (terrestrial vegetation and tidal-derived particulate organic matter) have distinctive δ¹³C and C/N signatures. The resulting relationship between ground elevation within the tidal frame and surface sediment δ¹³C and C/N is unaffected by decompositional changes. The potential of this technique for RSL reconstruction is demonstrated by the analysis of part of an early Holocene sediment core from the Mersey Estuary. Organic δ¹³C and C/N analysis is less time consuming than microfossil analysis and is likely to provide continuous records of RSL change.     

Native aluminium (spherules and particles) in the Central Indian Basin sediments: Implications on the occurrence of hydrothermal events

We have sampled particles of native aluminium (Al°) in two sediment cores from the Central Indian Basin (CIB). The cores are geographically separated but are located at the base of two seamounts. The native Al° particles occurring as grains and spherules, have an average Al content of  95% and are associated with volcanogenic–hydrothermal material. Morphologically and compositionally, the specimens are similar to those reported from the East Pacific Rise. After ruling out several processes for the presence of the native Al°, we hypothesize that during progressive melting of magma, a basaltic magma is produced which has high contents of reductants such as methane and hydrogen, and a low oxygen fugacity. During the upward migration of such magma, reduction to metallic aluminium and the formation of native Al° particles takes place.     

An unsteady wave driver for narrowbanded waves: modeling nearshore circulation driven by wave groups

In this paper, we derive an unsteady refraction–diffraction model for narrowbanded water waves for use in computing coupled wave–current motion in the nearshore. The end result is a variable coefficient, nonlinear Schrödinger-type wave driver (describing the envelope of narrow-banded incident waves) coupled to forced nonlinear shallow water equations (describing steady or unsteady mean flows driven by the short-wave field). Comparisons with experimental data show that good accuracy can be obtained for cases of nonbreaking wave transformation. Numerical simulations show that the interaction of wave groups with longshore topographic nonuniformities generates strong edge wave resonances, providing a generating mechanism for low-order edge waves.     

A review of eastern tropical Pacific oceanography: Summary

The collection of articles in this volume reviewing eastern tropical Pacific oceanography is briefly summarized, and updated references are given. The region is an unusual biological environment as a consequence of physical characteristics and patterns of forcing – including a strong and shallow thermocline, the ITCZ and coastal wind jets, equatorial upwelling, the Costa Rica Dome, eastern boundary and equatorial current systems, low iron input, inadequate ventilation of subthermocline waters, and dominance of ENSO-scale temporal variability. Remaining unanswered questions are presented.