Bioavailability: the organism as sensor

The use of a system of continuous culture of phytoplankton at constant population density, the ‘cage-culture’ turbidostat, as a monitor of the bioavailability of pollutant materials, is illustrated. In the case of proposed dredge spoils from two polluted areas, it is shown that bulk analyses for scheduled materials cannot be equated with bioavailability. Monitoring for the effect of the whole pollutant mixture on a properly chosen test population could obviate the necessity for chemical analyses for each component.     

Condition of coastal mesoplankton communities in the northeastern area of the Black Sea in 2005

The structure and distribution of mesoplankton in the northeastern part of the Black Sea along 6-mile and 100-mile sections in the area off Golubaya Bay (near the city of Gelendzhik) were analyzed. The studies were performed from R/V Akvanavt and the boat Ashamba. The observations were carried out during the vegetation season from the beginning of June to the first half of October 2005. Samples of mesoplankton were collected with use of a BSD net with an opening of 0.1 m² and a mesh size of 180 μm. Both the total (over the entire water column) and layer-by-layer (separately for the upper quasi-homogeneous layer, the seasonal thermocline, and the subthermocline layer) hauls were performed down to the bottom (at sea depths of less than 200 m) or down to the upper boundary of the hydrogen sulfide waters. The particular hydrophysical conditions that were observed in 2005 resulted in an approximately one-month advance of the phenological condition of the planktonic community as compared to the usual pattern. Beroe ovata appeared in the plankton at the end of July, the mass development of Mnemiopsis leidyi was suppressed, and the duration of its influence on edible zooplankton was essentially reduced. As a result, the total mesoplankton biomass in August–October 2005 was 1.5–2 times as great as that in 2004. The abundance of Acartia clausi increased approximately 4–5 times and the quantity of Sagitta setosa also considerably increased. At selected stations, Mnemiopsis leidyias, the main predator in the community, was replaced by Sagitta setosa.     

Primary production in the eastern tropical Pacific: A review

The eastern tropical Pacific includes 28 million km² of ocean between 23.5°N and S and Central/South America and 140°W, and contains the eastern and equatorial branches of the north and South Pacific subtropical gyres plus two equatorial and two coastal countercurrents. Spatial patterns of primary production are in general determined by supply of macronutrients (nitrate, phosphate) from below the thermocline. Where the thermocline is shallow and intersects the lighted euphotic zone, biological production is enhanced. In the eastern tropical Pacific thermocline depth is controlled by three interrelated processes: a basin-scale east/west thermocline tilt, a basin-scale thermocline shoaling at the gyre margins, and local wind-driven upwelling. These processes regulate supply of nutrient-rich subsurface waters to the euphotic zone, and on their basis we have divided the eastern tropical Pacific into seven main regions. Primary production and its physical and chemical controls are described for each.Enhanced rates of macronutrient supply maintains levels of primary production in the eastern tropical Pacific above those of the oligotrophic subtropical gyres to the north and south. On the other hand lack of the micronutrient iron limits phytoplankton growth (and nitrogen fixation) over large portions of the open-ocean eastern tropical Pacific, depressing rates of primary production and resulting in the so-called high nitrate-low chlorophyll condition. Very high rates of primary production can occur in those coastal areas where both macronutrients and iron are supplied in abundance to surface waters. In these eutrophic coastal areas large phytoplankton cells dominate; conversely, in the open-ocean small cells are dominant. In a ‘shadow zone’ between the subtropical gyres with limited subsurface ventilation, enough production sinks and decays to produce anoxic and denitrified waters which spread beneath very large parts of the eastern tropical Pacific.Seasonal cycles are weak over much of the open-ocean eastern tropical Pacific, although several eutrophic coastal areas do exhibit substantial seasonality. The ENSO fluctuation, however, is an exceedingly important source of interannual variability in this region. El Niño in general results in a depressed thermocline and thus reduced rates of macronutrient supply and primary production. The multi-decadal PDO is likely also an important source of variability, with the ‘El Viejo’ phase of the PDO resulting in warmer and lower nutrient and productivity conditions similar to El Niño.On average the eastern tropical Pacific is moderately productive and, relative to Pacific and global means, its productivity and area are roughly equivalent. For example, it occupies about 18% of the Pacific Ocean by area and accounts for 22–23% of its productivity. Similarly, it occupies about 9% of the global ocean and accounts for 10% of its productivity. While representative, these average values obscure very substantial spatial and temporal variability that characterizes the dynamics of this tropical ocean.     

Multi-proxy evidence of long-term changes in ecosystem structure in a Danish marine estuary, linked to increased nutrient loading

This paper presents a study of changes in eutrophication over the past 100 years in a fertile estuary. The Danish estuary Mariager Fjord is a long, narrow sill-fjord with a permanently anoxic basin. In 1997 anoxia spread from the basin to the entire inner estuary, killing almost all eukaryotes and prompting debate on the causes. This paper reports a multi-proxy survey of ²¹⁰Pb-dated sediment cores from the anoxic basin. Analyses of diatoms, dinoflagellates, pigments and geochemical proxies were used to determine changes in ecosystem structure over the past 100 years. The aim was to establish ‘base-line conditions’, for management purposes, of the biological structure prior to 1900, and to examine possible causes of changes observed. Geochemical proxies total nitrogen (TN), total carbon (TC) and biogenic silica (BSi) were consistently high throughout the sediment record. Increased concentrations of pigments and natural isotopes (δ¹³C, δ¹⁵N) suggested increasing production and nutrient loading. The main changes in the biological proxies occurred between 1915 and the 1940s, and indicated that the estuary has been somewhat eutrophic since 1900, but that the eutrophication process increased over the past 100 years. A reconstruction of TN concentration by a diatom-based transfer function supports this interpretation, with inferred TN ca. 1900 around 60 μmol l⁻¹, and an increase in TN concentration over the past century to ca. 130 μmol l⁻¹ by 1995. Inferred TN decreased to ca. 100 μmol l⁻¹ by 2001, similar to present day monitoring data.     

Baroclinic Buoyancy-Inertia Joint Stability Parameter

At present, the barotropic buoyant stability parameter has been derived from a vertical virtual displacement of a water parcel. The barotropic inertial stability parameter in the eccentrically cyclogeostrophic, basic current field was derived in 2003 from a horizontal cross-stream virtual displacement of a parcel. By expressing acceleration of a parcel due to a virtual displacement, which is arbitrarily sloping within a vertical section across the basic current, in terms of natural coordinates, we derived the vertical component of baroclinic buoyant stability parameter B ₂ ², the horizontal component of baroclinic inertial stability parameter I ₂ ², the baroclinic joint stability parameter J ², its buoyant component B ² and its inertial component I ². B ² is far greater than I ₂ ², and when neglecting relative vorticity except for vertical shear, a downward convex curve of J ² plotted against the slope of a virtual displacement follows a trend of B ² curve. If a parcel displaces along a horizontal surface or an isopycnal surface, however, B ² vanishes, and J ² becomes equal to I ². Actual parcel is apt to displace not only along the bottom slope, but also along the sea surface and an isopycnal interfacial surface, which is approximately equivalent to an isentropic surface, preferred by lateral mixing and exchange of momentum. Such actual displacement makes B ² vanishing, and grants I ² an important role. The present analysis of I ² examining effects due to curvature and horizontal and vertical shear vorticities are useful in deepening our understanding of baroclinic instability in actual oceanic streams.     

Preconditioned Optimizing Utility for Large-dimensional analyses (POpULar)

I present the derivation of the Preconditioned Optimizing Utility for Large-dimensional analyses (POpULar), which is developed for adopting a non-diagonal background error covariance matrix in nonlinear variational analyses (i.e., analyses employing a non-quadratic cost function). POpULar is based on the idea of a linear preconditioned conjugate gradient method widely adopted in ocean data assimilation systems. POpULar uses the background error covariance matrix as a preconditioner without any decomposition of the matrix. This preconditioning accelerates the convergence. Moreover, the inverse of the matrix is not required. POpULar therefore allows us easily to handle the correlations among deviations of control variables (i.e., the variables which will be analyzed) from their background in nonlinear problems. In order to demonstrate the usefulness of POpULar, we illustrate two effects which are often neglected in studies of ocean data assimilation before. One is the effect of correlations among the deviations of control variables in an adjoint analysis. The other is the nonlinear effect of sea surface dynamic height calculation required when sea surface height observation is employed in a three-dimensional ocean analysis. As the results, these effects are not so small to neglect.     

Numerical Simulation of Wind Currents and Propagation of Impurities in the Balaklava Bay

We present the results of numerical experiments aimed at the simulation of the circulation of waters and transport of impurities in the Balaklava Bay for typical wind conditions established on the basis of the analysis of the data of in-situ measurements. The currents are computed by using the nonlinear σ-coordinate model. The specific features of the integral circulation and three-dimensional structure of the current field are investigated. The statistical characteristics of currents are estimated on the basis of the in-situ data on winds and model calculations. Possible scenarios of propagation of impurities from the coastal sources are analyzed for various hydrodynamic conditions. It is shown that the localized eddy structures in the current fields (in combination with the zones of intense vertical motion) can result in a complex character of the transport of substances in the bay and lead to the formation of local regions of maximum concentrations of impurities on the boundary of the north and central parts of the bay. __________ Translated from Morskoi Gidrofizicheskii Zhurnal, No. 4, pp. 43–58, July–August, 2005.     

Storms and shoreline retreat in the southern Gulf of St. Lawrence

Storms play a major role in shoreline recession on transgressive coasts. In the southern Gulf of St. Lawrence (GSL), southeastern Canada, long-term relative sea-level rise off the North Shore of Prince Edward Island has averaged 0.3 m/century over the past 6000 years (>0.2 m/century over 2000 years). This has driven long-term coastal retreat at mean rates >0.5 m/a but the variance and details of coastal profile response remain poorly understood. Despite extensive sandy shores, sediment supply is limited and sand is transferred landward into multidecadal to century-scale storage in coastal dunes, barrier washover deposits, and flood-tidal delta sinks. Charlottetown tide-gauge records show mean relative sea-level rise of 3.2 mm/a (0.32 m/century) since 1911. A further rise of 0.7±0.4 m is projected over the next 100 years. When differenced from tidal predictions, the water-level data provide a 90-year record of storm-surge occurrence. Combined with wind, wave hindcast, and sea-ice data, this provides a catalogue of potentially significant coastal storms. We also document coastal impacts from three recent storms of great severity in January and October 2000 and November 2001. Digital photogrammetry (1935–1990) and shore-zone surveys (1989–2001) show large spatial and temporal variance in coastal recession rates, weakly correlated with the storm record, in part because of wave suppression or coastal protection by sea ice. Large storms cause rapid erosion from which recovery depends in part on local sand supply, but barrier volume may be conserved by washover deposition. Barrier shores with dunes show high longshore and interdecadal variance, with extensive multidecadal healing of former inlet and overwash gaps. This reflects recovery from an episode of widespread overwash prior to 1935, possibly initiated by intense storms or groups of storms in the latter half of the 19th century. With evidence from the storms of 2000–2001, this points to the importance of storm clustering on scales of weeks to years in determining erosion vulnerability, as well as the need for a long-term, large-scale perspective in assessing coastal stability. The expected acceleration in relative sea-level rise, together with projections of increasing storm intensity and greatly diminished winter ice cover in the southern GSL, implies a significant increase in coastal erosion hazards in future.