A Review on Marine N2 Fixation: Mechanism,Evolution of Methodologies,Rates, and Future Concerns

Ocean Science Journal - Investigations on marine N2 fixation have gained momentum since 1960s with eventual establishments of relevant methodologies to identify species involved and quantify the...     

Day-Night and Gastrointestinal Changes in Winter Feeding Intensity and Prey Composition of Apogon lineatus Inhabiting the Southeastern Waters of Korea

Ocean Science Journal - Diel and gastrointestinal changes in relation to the feeding intensity and prey composition of Apogon lineatus were investigated through the analysis of the diet contents of...     

Molecular Identification and Expression Analysis of Carbonic Anhydrase VII in Pufferfish (Takifugu rubripes)

Ocean Science Journal - A carbonic anhydrase VII gene, encoding 277 amino acids, was identified in the intestinal tissue of pufferfish (Takifugu rubripes). The translated protein with an 833-bp...     

Robust abnormality detection methods for spatial search of radioactive materials

Radiological dirty bombs and improvised nuclear devices pose a significant threat to both public health and national security. Growing networks of radiation sensors have been deployed by a number of offices within the U.S. and international agencies. Detecting such threats while minimizing false alarm rates presents a considerable challenge to homeland security and public health. This research aims to achieve a higher probability of detection with a lower probability of false alarms. It focuses on the local spatial instability of radiation levels in order to detect radioactive materials based on robust outlier detection methods. Our approach includes a three‐step abnormality detection method consisting of one‐dimensional robust outlier detection for all gamma‐ray counts, a density‐based clustering analysis, and a two‐dimensional robust outlier detection method using a bagplot, based on spatial associations. The effectiveness of the method proposed is demonstrated through a case study, wherein radioactive materials are detected in urban environments, and its performance is compared with alternative methods employing a k‐sigma approach, local Getis–Ord () statistic, and the goodness of fit of the Poisson distribution.     

Molecular expression of opsin gene in growing juvenile mackerel (<Emphasis Type="Italic">Scomber japonicus</Emphasis> Houttuyn)

Fish have developed color vision that is closely adapted to their photic environments, where both spectral sensitivity and the number of visual opsins are influenced. The mackerel used in this study is one of the most important fishery stocks in Korea. The opsin gene of the mackerel juveniles after 20 days in hatching was isolated and characterized based on the molecular study of visual photoreceptor. The full-length mackerel opsin gene was obtained by PCR amplification of genomic DNA, as well as cDNA synthesis. Sequence analysis of the opsin gene showed that it contained a 1,080 bp open reading frame encoding 360 amino acids. Based on Schiff’s base formation (S114, K119), glycosylation (E3, F37) and palmitoylation (S281, 282), the deduced amino acid sequence had a typical rod opsin. The mackerel and Gempylus serpens showed 73.7% DNA homology on opsin gene, which was higher than any other of investigated species. In the analysis of phylogenetic relationship, the genetic placement of the mackerel is closer to that of Scombroidei than Labroidei, with supporting somewhat strong bootstrap value. In the analysis of Northern and RT-PCR, the probed products were observed only in rapidly growing juveniles. These findings indicate that in mackerel opsin mRNA expression can be detected in day-20 hatching larvae. It may play an important role in stimulating growth hormone.     

Effect of wave amplitude on turbulent flow in a wavy channel by direct numerical simulation

The present study numerically investigates the characteristics of three-dimensional turbulent flow in a wavy channel. For the purpose of a careful observation of the effect of the wave amplitude on the turbulent flow, numerical simulations are performed at a various range of the wave amplitude to wavelength ratio (0.01?α/λ?0.05), where the wavelength is fixed with the same value of the mean channel height (H). The immersed boundary method is used to handle the wavy surface in a rectangular grid system, using the finite volume method. The Reynolds number (Re=U_bH/ν) based on the bulk velocity (U_b) is fixed at 6760. The present computational results for a wavy surface are well compared with those of references. When α/λ=0.02, the small recirculating flow occurs near the trough at the instant, but the mean reverse flow is not observed. In the mean flow field, the reverse flow appears from α/λ=0.03 among the wave amplitude considered in this study. The domain of the mean reverse flow defined by the locations of separation and reattachment depends strongly on the wave amplitude. The pressure drag coefficient augments with increasing the wave amplitude. The friction drag coefficient shows the increase and decrease behavior according to the wave amplitude. The quantitative information about the flow variables such as the distribution of pressure and shear stress on the wavy surface is highlighted.     

A Nonlinear Model of Surf Beat

A nonlinear short-wave-averaged (surf beat) model is presented. The model is based on that of Roelvink (1993), but the numerical techniques used in the solution are based on the so-called weighted-averaged flux (WAF) method (eg Watson et al., 1992), with time-operator splitting used for the treatment of some of the source terms. This method allows a small number of computational points to be used, and is particularly efficient in modelling breaking long waves. The short-wave (or primary-wave) energy equation is solved using a more traditional Lax-Wendroff technique. Results of validation indicate that the model performs satisfactorily in most respects.     

Population Genetic Structure of Rock Bream (<Emphasis Type="Italic">Oplegnathus fasciatus</Emphasis> Temminck &amp; Schlegel, 1884) Revealed by mtDNA COI Sequence in Korea and China

The rock bream, Oplegnathus fasciatus, is a common rocky reef game fish in East Asia and recently has become an aquaculture species. Despite its commercial importance, the population genetic structure of this fish species remains poorly understood. In this study, 163 specimens were collected from 6 localities along the coastal waters of Korea and China and their genetic variation was analyzed with mtDNA COI sequences. A total of 34 polymorphic sites were detected which determined 30 haplotypes. The genetic pattern reveals a low level of nucleotide diversity (0.04 ± 0.003) but a high level of haplotype diversity (0.83 ± 0.02). The 30 haplotypes are divided into two major genealogical clades: one that consists of only Zhoushan (ZS, East China Sea) specific haplotypes from the southern East China Sea and the other that consists of the remaining haplotypes from the northern East China Sea, Yellow Sea, Korea Strait, and East Sea/Sea of Japan. The two clades are separated by approximately 330~435 kyBP. Analyses of AMOVA and F_st show a significant population differentiation between the ZS sample and the other ones, corroborating separation of the two genealogical clades. Larval dispersal and the fresh Yangtze River plume are invoked as the main determining factors for this population genetic structure of O. fasciatus. Neutrality tests and mismatch distribution analyses indicate late Pleistocene population expansion along the coastal waters of Korea and China approximately 133–183 kyBP during which there were periodic cycles of glaciations and deglaciations. Such population information needs to be taken into account when stock enhancement and conservation measures are implemented for this fisheries species.     

Relation of CME Speed and Magnetic Helicity in CME Source Regions on the Sun during the Early Phase of Solar Cycles 23 and 24

To investigate the relations between coronal mass ejection (CME) speed and magnetic field properties measured in the photospheric surface of CME source regions, we selected 22 disk CMEs in the rising and early maximum phases of the current Solar Cycle 24. For the CME speed, we used two-dimensional (2D) projected speed observed by the Large Angle and Spectroscopic Coronagraph onboard the Solar and Heliospheric Observatory (SOHO/LASCO), as well as a 3D speed calculated from the triangulation method using multi-point observations. Two magnetic parameters of CME source regions were considered: the average of magnetic helicity injection rate and the total unsigned magnetic flux. We then classified the selected CMEs into two groups, showing: i) a monotonically increasing pattern with one sign of helicity (group A: 16 CMEs) and ii) a pattern of significant helicity injection followed by its sign reversal (group B: 6 CMEs). We found that: 1) 3D speed generally shows better correlations with the magnetic parameters than the 2D speed for 22 CME events in Solar Cycle 24; 2) 2D speed and the magnetic parameters of 22 CME events in this solar cycle have lower values than those of 47 CME events in Solar Cycle 23; 3) all events of group B in Solar Cycle 24 occur only after the beginning of the maximum phase, a trend well consistent with that shown in Solar Cycle 23; 4) the 2D speed and the helicity parameter of group B events continue to increase in the declining phase of Solar Cycle 23, while those of group A events abruptly decrease in the same period. Our results indicate that the two CME groups have a different tendency in the solar cycle variations of CME speed and the helicity parameters. Active regions that show a complex helicity evolution pattern tend to appear in the maximum and declining phases, while active regions with a relatively simple helicity evolution pattern appear throughout the whole solar cycle.