A Sensitive and Versatile Multiplex PCR System for the Rapid Detection of Enterotoxigenic (ETEC), Enterohaemorrhagic (EHEC) and Enteropathogenic (EPEC) Strains of Escherichia coli

Although Escherichia coli is widely distributed in the marine environment, only a small percentage are pathogenic to humans. Nonetheless, the widespread occurrence of waterborne infections of E. coli origin in humans has become one of the major health problems worldwide. To date, several types of enterovirulent E. coli have been recognized as the aetiologic agents of various gastrointestinal infections in humans. The most commonly encountered are those belonging to the enterotoxigenic (ETEC), enteroinvasive (EIEC), enterohaemorrhagic (EHEC) and enteropathogenic (EPEC) subtypes. In order to better determine the health risks that are associated with exposure to some of these specific subtypes, we have developed a very sensitive multiplex PCR system for the rapid detection and typing of ETEC, EHEC and possibly EPEC strains of E. coli in the aquatic environment. The target genes chosen for this investigation included: the PHO-A housekeeping gene (present in all E. coli); the LT1, LT2 and ST1 genes of ETEC; the VT1 and VT2 verotoxin, and EAE virulence genes of EHEC and EPEC, respectively. Six pairs of oligonucleotide primers were designed to simultaneously amplify internal fragments of these genes by multiplex PCR to generate PCR products that could be analysed and confirmed with relative ease by gel electrophoresis and HincII enzyme digestion. The results showed that the six sets of PCR primers were highly specific for their target genes and produced specific amplimers of the expected size from several control strains of E. coli – ATCC 35401 (LT1+/ST1+); SA53 (LT2+/VT2+); and O157 (VT1+/VT2+/EAE+). The detection sensitivity of the multiplex PCR system for the six target genes in an E. coli cell mixture was optimized and enhanced by preincubating serially diluted cells in Luria-Bertani broth for 6 h prior to PCR analysis. The results obtained indicated a detection sensitivity of 10° CFU (of each strain) per 100 μl reaction. Multiplex PCR analysis of seawater samples collected from four sewage-polluted sites in Hong Kong indicated the presence in all four samples of E. coli bacteria that were positive for LT1, ST1, VT1 and EAE virulence genes. Overall, the data indicated that the multiplex PCR system described in this study is a potentially very useful and powerful method for routine monitoring and risk assessment of water quality.     

Internet 下多数据源、超媒体空间信息的分布式调度与管理

在综述当代Ｉｎｔｅｒｎｅｔ ＧＩＳ各种实现模式基础上,提出了多数据源、超媒体空间信息的分布式管理与可视化调度的策略,使各种纷繁芜杂的空间信息相互协调为有机联系的整体,从而实现了空间信息的分布式处理和信息共享。     

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Response mechanism of post-earthquake slopes under heavy rainfall

This paper uses the catastrophic landslide that occurred in Zhongxing Town, Dujiangyan City, as an example to study the formation mechanism of landslides induced by heavy rainfall in the post-Wenchuan earthquake area. The deformation characteristics of a slope under seismic loading were investigated via a shaking table test. The results show that a large number of cracks formed in the slope due to the tensile and shear forces of the vibrations, and most of the cracks had angles of approximately 45° with respect to the horizontal. A series of flume tests were performed to show how the duration and intensity of rainfall influence the responses of the shaken and non-shaken slopes. Wetting fronts were recorded under different rainfall intensities, and the depth of rainfall infiltration was greater in the shaken slope than in the non-shaken slope because the former experienced a greater extreme rainfall intensity under the same early rainfall and rainfall duration conditions. At the beginning of the rainfall infiltration experiment, the pore water pressure in the slope was negative, and settling occurred at the top of the slope. With increasing rainfall, the pore water pressure changed from negative to positive, and cracks were observed on the back surface of the slope and the shear outlet of the landslide on the front of the slope. The shaken slope was more susceptible to crack formation than the non-shaken slope under the same rainfall conditions. A comparison of the responses of the shaken and non-shaken slopes under heavy rainfall revealed that cracks formed by earthquakes provided channels for infiltration. Soil particles in the cracks of slopes were washed away, and the pore water pressure increased rapidly, especially the transient pore water pressure in the slope caused by short-term concentrated rainfall which decreased rock strength and slope stability.     

Diffraction separation by plane-wave prediction filtering

Seismic data processing typically deals with seismic wave reflections and neglects wave diffraction that affect the resolution. As a general rule, wave diffractions are treated as noise in seismic data processing. However, wave diffractions generally originate from geological structures, such as fractures, karst caves, and faults. The wave diffraction energy is much weaker than that of the reflections. Therefore, even if wave diffractions can be traced back to their origin, their energy is masked by that of the reflections. Separating and imaging diffractions and reflections can improve the imaging accuracy of diffractive targets. Based on the geometrical differences between reflections and diffractions on the plane-wave record; that is, reflections are quasi-linear and diffractions are quasi-hyperbolic, we use plane-wave prediction filtering to separate the wave diffractions. First, we estimate the local slope of the seismic event using planewave destruction filtering and, then, we predict and extract the wave reflections based on the local slope. Thus, we obtain the diffracted wavefield by directly subtracting the reflected wavefield from the entire wavefield. Finally, we image the diffracted wavefield and obtain high-resolution diffractive target results. 2D SEG salt model data suggest that the plane-wave prediction filtering eliminates the phase reversal in the plane-wave destruction filtering and maintains the original wavefield phase, improving the accuracy of imaging heterogeneous objects.     

SPATIAL VARIATION OF Zn GEOCHEMICAL FRACTIONS IN THE SURFACE SEDIMENTS OF THE STRAITS OF MALACCA: NATURAL OR ANTHROPOGENIC?

1INTRODUCTION Studiesonheavymetalcontaminationinsedi mentshavealwaysbeenfocusedonthecoastalandin tertidalareas(Sivalingam,etal.,1980;Ismail,1993;Ismail,etal.,1993;IsmailandRosniza,1997;Yap,etal.,2002a,2002b).Theheavymet alconcentrationsfoundinthesediments…     

川东北宣汉地区新型杂卤石钾盐矿的地球化学特征及其意义

新型杂卤石钾盐矿分布于川东北宣汉地区早-中三叠世蒸发岩层中,以杂卤石碎屑不均匀的分布于石盐层为特征。笔者对HC3井新型杂卤石钾盐矿段进行连续取样,并进行水溶化学实验,根据其可溶部分的主量、微量元素特征发现:①溶液中的(K+Mg)/Ca值平均为1.24,略小于杂卤石中的(K+Mg)/Ca值(1.27),整体损失率为2.36%,远小于CaSO4组分在杂卤石中的含量(48%),表明杂卤石在石盐基质溶解形成的NaCl溶液中有较好的溶解度,有利于溶采;②Br×103/Cl值分布在0.16～0.44,显示新型杂卤石钾盐矿的蒸发阶段位于正常石盐阶段内,整体较高,蒸发阶段稳定无剧烈波动,仅顶部出现快速淡化,结合前人对杂卤石的成因研究,笔者认为石盐层不具备形成杂卤石的条件,杂卤石碎屑是一种"外来物";③含硬石膏碎屑中,(K+Mg)/Ca值随着Br×103/Cl值的增加而增高,表明碎屑中的杂卤石的含量随成盐卤水浓缩程度的升高而增加。     

Modification and discussion of the Green-Ampt model for an evolving wetting profile

ABSTRACT

The Green-Ampt (GA) model has been widely used to evaluate soil water infiltration. While a simple piston profile is commonly used, the wetting profile of a soil changes during infiltration and a quarter-ellipse has been found to better describe its evolution. This study aims to improve the GA model and discuss the model parameters when the quarter-ellipse profile is utilized. The soil column is divided into three zones: saturated, transient and dry. The variable γ is introduced to express the ratio of the saturated zone depth to the wetting front depth. A modified GA model is derived via mathematical methods, but an exact solution is difficult to obtain. Therefore, a simplified (SGA) model is developed via a segmented method. Compared with the measured results, the SGA model is more accurate than the traditional model. Finally, the model parameters are discussed and a value of γ = 0.5 is recommended.     

青藏高原东南缘高山湖泊藻类响应气候变化和大气沉降的长期特征

高山湖泊远离人类活动直接影响,通常具有面积小、寡营养、食物网单一等特点,对气候变化和营养输入具有较高的敏感性。我国青藏高原东南缘地区氮沉降通量较高、增温幅度显著,已有研究显示该地区可能受湖泊类型、流域特征等影响存在差异性的湖泊响应模式。本研究选择该区域位于树线以下、具有不同水深的3个小型湖泊(盖公错纳、沃迪错、碧沽天池)开展沉积物调查和对比研究,通过钻孔样品测年、理化特征和藻类(硅藻群落、藻类色素)等多指标分析,结合区域气候定量重建和氮沉降等数据收集,评价了过去300年来藻类演替模式的异同特征及湖泊水深的调节作用。结果显示,3个湖泊中硅藻的优势物种与群落组成差异明显。深水型湖泊盖公错纳(最大水深39.4 m)的硅藻群落以浮游种为主(占比达82%),优势种为眼斑小环藻(Pantocsekiolla ocellata)、科曼小环藻(Pantocsekiella comensis);深水型湖泊沃迪错(最大水深20.7 m)的硅藻群落中浮游种和底栖种约各占50%,优势种为眼斑小环藻(Pantocsekiella ocellata)、连结脆杆藻(Saurosira construens);浅水湖...