Research Note: Overpressure prediction from C‐wave seismic data

Recently, mode converted shear waves (C‐waves) have been shown to enable overpressure prediction in media where primary wave acquisition is inhibited by gas and fluid effects – C‐wave moveout is analysed and a long standing relationship between differential stress and primary‐wave (P‐wave) velocity is modified and employed. Though pore‐pressure prediction based on C‐waves is supported by empirical evidence from laboratory and field experiments, a theoretical justification has yet to be developed. In this research note, we provide a supporting algebra for the original relationship between pore pressure and C‐wave velocity.     

Microbial sources of intact polar diacylglycerolipids in the Western North Atlantic Ocean

Intact polar membrane lipids are essential components of microbial membranes and recent work has uncovered a diversity of them occurring in the ocean. While it has long been understood that lipid composition varies across microbial groups, the microbial origins of the intact polar lipids in the surface ocean remain to be fully explained. This study focused on identifying the microbial sources of intact polar diacylglycerolipids (IP-DAGs) in the surface waters of the western North Atlantic Ocean. We used three approaches to define these microbial sources: (i) ¹³C tracing to identify photoautotrophic and heterotrophic production of the major classes of IP-DAGs, (ii) cell sorting flow cytometry of Prochlorococcus, Synechococcus and heterotrophic bacteria to determine IP-DAG composition and (iii) regrowth incubations targeting IP-DAG production by heterotrophic bacteria. Stable isotope tracing indicated that sulfoquinovosyldiacylglycerol (SQDG) and diacylglyceryl-trimethyl-homoserine (DGTS) were produced predominantly by photoautotrophs, while phosphatidylglycerol (PG) production was dominated by heterotrophic bacteria. Of the cells sorted with flow cytometry, Prochlorococcus and Synechococcus were found to have abundant glycolipids, while heterotrophic bacteria were dominated by phospholipids. The regrowth incubations showed that the growth of heterotrophic bacteria correlated with an increase in the concentration of PG, phosphatidylethanolamine (PE) and monoglycosyldiacylglycerol (MGDG). The finding of MGDG in heterotrophic bacteria differs from previous work, which had asserted that the membranes of heterotrophic bacteria in this environment were composed entirely of phospholipids. Overall, our findings indicate that phytoplankton are the primary source of SQDG and DGTS, while heterotrophic bacteria are the dominant source of PG, making these three compounds promising biomarkers for the study of microbes in the surface ocean.     

Knowledge gaps in tropical Southeast Asian seagrass systems

Seagrasses are habitats with significant ecological and economic functions but we have limited knowledge of seagrasses in Southeast Asia, the hypothesized centre-of-origin for tropical seagrasses. There have been only 62 ISI-cited publications on the seagrasses of Southeast Asia in the last three decades and most work has been in few sites such as Northwest Luzon in the Philippines and South Sulawesi in Indonesia. Our understanding of the processes driving spatial and temporal distributions of seagrass species here has focussed primarily on backreef and estuarine seagrass meadows, with little work on forereef systems. We used Pulau Tinggi, an island off the southeast coast of Peninsular Malaysia, as an example of a subtidal forereef system. It is characterized by a community of small and fast growing species such as Halophila ovalis (mean shoot density 1454.6 ± 145.1 m⁻²) and Halodule uninervis (mean shoot density 861.7 ± 372.0 m⁻²) growing in relatively low light conditions (mean PAR 162.1 ± 35.0 μmol m⁻² s⁻¹ at 10 m depth to 405.8 ± 99.0 μmol m⁻² s⁻¹ at 3 m water depth) on sediment with low carbonate (mean 9.24 ± 1.74 percentage dry weight), organic matter (mean 2.56 ± 0.35 percentage dry weight) and silt-clay content (mean 2.28 ± 2.43 percentage dry weight). The literature reveals that there is a range of drivers operating in Southeast Asian seagrass systems and we suggest that this is because there are various types of seagrass habitats in this region, i.e. backreef, forereef and estuary, each of which has site characteristics and ecological drivers unique to it. Based on our case study of Pulau Tinggi, we suggest that seagrasses in forereef systems are more widespread in Southeast Asia than is reflected in the literature and that they are likely to be driven by recurring disturbance events such as monsoons, sediment burial and herbivory.     

A century later: Long-term change of an inshore temperate marine fish assemblage

There is compelling evidence that European marine fish assemblages have undergone extensive changes in composition over the last century. However, our knowledge of which species have changed in abundance and body size distributions, and the reasons for these changes, is limited due to a paucity of historical data. Here we report a study of long-term change in a marine fish assemblage from the inshore waters of the Western English Channel, near Plymouth. We compiled data from historic trawls undertaken between 1913 and 1922, and resurveyed those sites in 2008 and 2009. Our results revealed highly significant temporal differences in assemblage composition, but the scale of change was not consistent among taxonomic groups. Dramatic changes were recorded within the elasmobranchs, characterised by a reduction in abundance of all skate (Rajiidae) species, apparent extirpation of the angel shark (Squatina squatina), and large increases in the abundance of lesser-spotted catshark (Scyliorhinus canicula). By contrast we observed less evidence of change among ‘flatfishes’ (Pleuronectiformes) or ‘roundfishes’ (other teleosts). Changes were also observed in length–frequency distributions, with a significant decline in the size distribution of elasmobranchs (excluding S. canicula), but no significant change in size distributions of either group of teleosts. These data provide further evidence that larger, slow-maturing species have undergone declines in UK waters over the last century, and form useful benchmarks for assessment of future changes in this coastal faunal assemblage.     

Tornado folk science in Alabama and Mississippi in the 27 April 2011 tornado outbreak

In this paper, we collect, categorize, and discuss the existence of numerous ways of knowing about tornado threat that largely differ from the perspective taken by the meteorological community. These alternate ways of knowing became apparent during interviews with survivors of the 27 April 2011 tornado outbreak in the US southeast, particularly in Alabama and Mississippi. Phenomena discussed herein include perceptions of safety near waterways, vulnerability near a specific highway with a recently modified landscape, the protective nature of hills, relative optimism about home sites, and local observational weather knowledge. Theoretical explanations offered for these observed phenomena include ideas from risk perception and place attachment literatures.     

The Beagle 2 stereo camera system

The stereo camera system (SCS) was designed to provide wide-angle multi-spectral stereo imaging of the Beagle 2 landing site. Based on the Space-X micro-cameras, the primary objective was to construct a digital elevation model of the area in reach of the lander's robot arm. The SCS technical specifications and scientific objectives are described; these included panoramic 3-colour imaging to characterise the landing site; multi-spectral imaging to study the mineralogy of rocks and soils beyond the reach of the arm and solar observations to measure water vapour absorption and the atmospheric dust optical density. Also envisaged were stellar observations to determine the lander location and orientation, multi-spectral observations of Phobos & Deimos and observations of the landing site to monitor temporal changes.     

The specific molecular identification of life experiment (SMILE)

We describe a compact, highly integrated instrument concept for the detection and identification of a wide range of molecules associated with extinct/extant life or potential life processes. The Specific Molecular Identification of Life Experiment (SMILE) will be sensitive to the presence of a range of target molecules using both electrical and optical transduction techniques, and incorporates molecular imprinted polymers in addition to traditional biological receptors such as antibodies. A number of versions of the concept are possible depending on available resources e.g. mass, volume, etc. The full concept utilises a novel imaging interferometer where a large number of molecular receptors are deposited on the measurement plane of an imaging interferometer and read out by an imaging detector, enabling multiple targets—biomarkers—within a sample to be measured simultaneously. The optics can also form the basis of an UV-NIR imaging Fourier spectrometer allowing basic mineralogy studies to be conducted using optical properties to assist in the determination of the geological context of the samples. By incorporating micro-fabricated transducer arrays, micro-fluidics and artificial molecular recognition systems, as well as recombinant antibody technology with appropriate integration methods, SMILE forms a compact and robust “Life Marker Chip” which has been proposed for future planetary missions including ESA's ExoMars mission, where the instrument offers the possibility of conducting a direct in situ search for signs of past or present biological activity on Mars. In addition to its role in planetary exploration, derivatives of SMILE have multiple terrestrial applications in fields such as forensic analysis and environmental monitoring.     

Phylogeography of the bluespotted cornetfish,Fistularia commersonii: a predictor of bioinvasion success?

Biological invasions result in huge ecological and economic impacts; therefore, a great amount of effort is dedicated to predicting the potential success of newly established or candidate bioinvaders. Thus far, over 90 species of fish have entered the Mediterranean Sea via the Suez canal, the so‐called Lessepsian bioinvaders. The bluespotted cornetfish, Fistularia commersonii, is remarkable in its ability to disperse within the Mediterranean and has been dubbed ‘the Lessepsian sprinter’. In just a few years, starting in 2000, it expanded over the entire area, from the Suez Canal to Gibraltar. Theoretical predictions correlate the dispersal capabilities of an invader in its native range (using the population genetic metrics, F_st, as a proxy) with its dispersal capability in its invading area (continuous extent of spread, CES). Here, we estimated the population genetic characteristics of Indo‐Pacific native populations of F. commersonii in order to determine if this Lessepsian ‘sprinter’ fits the predictive model of dispersal. Indeed, we found that even in the case of such a very rapid range expansion, the predicted relationship between F_st and CES is fulfilled in F. commersonii.     

Seasonal Prevalence of Hematodinium sp. Infections of Blue Crabs in Three South Carolina (USA) Rivers

Blue crab, Callinectes sapidus, commercial landings in the USA have been declining at an alarming rate. In South Carolina, these declines are significantly correlated with years of decreased rainfall and elevated salt marsh salinity. Previous studies suggest that higher salinity increases the risk of infection by Hematodinium sp., a dinoflagellate parasite of blue crabs, C. sapidus. A 4-year survey (June 2008 to March 2012) of blue crabs in the ACE Basin National Estuarine Research Reserve documented (1) the temporal and spatial patterns of Hematodinium sp. infection in relation to salinity, (2) some environmental correlates of disease prevalence, and (3) the characteristics of infected blue crabs. Sampling was conducted four times a year in March, June, September, and December in the South Edisto, Ashepoo, and Combahee rivers beginning in June 2008. Crab hemolymph samples were collected and preserved and DNA was successfully amplified for 2,303 individuals. Hematodinium sp. infection was evaluated by PCR amplification of its 18S rRNA gene and adjacent regions. Prevalence was highest in December 2008 in the Combahee River at sites closest to St. Helena Sound. The spatial and temporal pattern of Hematodinium sp. infection was correlated with several environmental parameters. Infected crabs exhibited differences in carapace shape and body condition compared to uninfected crabs. Overall, these results suggest that blue crabs in regions of higher salinity are at greater risk of infection by Hematodinium sp. and infected individuals exhibit sub-lethal effects of the disease.     

Scouring the surface: Ejecta dynamics and the LCROSS impact event

The Lunar CRater Observation and Sensing Satellite mission (LCROSS) impacted the moon in a permanently shadowed region of Cabeus crater on October 9th 2009, excavating material rich in water ice and volatiles. The thermal and spatial evolution of LCROSS ejecta is essential to interpretation of regolith properties and sources of released volatiles. The unique conditions of the impact, however, made analysis of the data based on canonical ejecta models impossible. Here we present the results of a series of impact experiments performed at the NASA Ames Vertical Gun Range designed to explore the LCROSS event using both high-speed cameras and LCROSS flight backup instruments. The LCROSS impact created a two-component ejecta plume: the usual inverted lampshade “low-angle” curtain, and a high speed, high-angle component. These separate components excavated to different depths in the regolith. Extrapolations from experiments match the visible data and the light curves in the spectrometers. The hollow geometry of the Centaur led to the formation of the high-angle plume, as was evident in the LCROSS visible and infrared measurements of the ejecta. Subsequent ballistic return of the sunlight-warmed ejecta curtain could scour the surface out to many crater radii, possibly liberating loosely bonded surface volatiles (e.g., H₂). Thermal imaging reveals a complex, heterogeneous distribution of heated material after crater formation that is present but unresolved in LCROSS data. This material could potentially serve as an additional source of energy for volatile release.