Cloning of a chub metallothionein cDNA and development of competitive RT-PCR of chub metallothionein mRNA as a potential biomarker of heavy metal exposure

Metallothionein has been assayed in a range of aquatic animal tissues as an indicator of metal exposure. We sequenced chub (Leuciscus cephalus) metallothionein cDNA which showed over 90% homology to common carp, goldfish and stone loach and 77% homology to rainbow trout sequences for metallothionein. We then used the extended primer method to develop an accurate quantitative competitive RT-PCR assay for metallothionein mRNA. RT-PCR was used to measure metallothionein mRNA in feral chub from a range of field sites, with different levels of heavy metal pollution, in the West Midlands, UK. Measurements were complemented by analysis of liver and gill metallothionein protein by capillary electrophoresis. There was no significant difference in the metallothionein protein levels between fish of different rivers and there was no evidence of elevation of mRNA at the sites of highest metal exposure. The level of metal exposure (e.g. zinc, nickel and cadmium each ranging between 15 and 28 microg/l ) at the pH (7.5-8.5) of these rivers appears insufficient to elevate hepatic or gill metallothionein in chub. A lack of elevation of hepatic metallothionein mRNA in chub exposed to zinc, copper and manganese for 24 h and 10 days in the laboratory also suggests a non-responsiveness of this species.     

Influence of capture stress, salinity and reproductive status on zinc associated with metallothionein-like proteins in the livers of three marine teleost species

The influence of capture stress, salinity and reproductive status on zinc associated with the metallothionein-like (MT-like) proteins in the livers of three marine teleost species was investigated. In striped mullet, Mugil cephalus L., the zinc associated with the MT-like protein, as determined by gel-permeation HPLC, increased significantly from approximately 102 to 1162 nmol zinc bound/g wet wt 7 days following capture in the field, handling, transportation to the laboratory and transfer to holding tanks. Significant increases were also observed following exposure to reduced salinity for 7 days. Smaller increases were observed in cultured red drum, Sciaenops ocellatus, livers following exposure to reduced salinity and physical trauma for 7 days. Finally, there was approximately a 2·5-fold increase in the zinc associated with the MT-like protein in livers of female spotted seatrout, Cynoscion nebulosus, collected during the reproductive season compared to regressed animals. These findings emphasize the need for establishing the natural fluctuations in MT levels as well as the response to common physical environmental variables before measurement of MT can be used reliably as a biochemical indicator of environmental contamination.     

Crustal Thinning of the Northern Continental Margin of the South China Sea

Magnetic data suggest that the distribution of the oceanic crust in the northern South China Sea (SCS) may extend to about 21 °N and 118.5 °E. To examine the crustal features of the corresponding continent–ocean transition zone, we have studied the crustal structures of the northern continental margin of the SCS. We have also performed gravity modeling by using a simple four-layer crustal model to understand the geometry of the Moho surface and the crustal thicknesses beneath this transition zone. In general, we can distinguish the crustal structures of the study area into the continental crust, the thinned continental crust, and the oceanic crust. However, some volcanic intrusions or extrusions exist. Our results indicate the existence of oceanic crust in the northernmost SCS as observed by magnetic data. Accordingly, we have moved the continent–ocean boundary (COB) in the northeastern SCS from about 19 °N and 119.5 °E to 21 °N and 118.5 °E. Morphologically, the new COB is located along the base of the continental slope. The southeastward thinning of the continental crust in the study area is prominent. The average value of crustal thinning factor of the thinned continental crust zone is about 1.3–1.5. In the study region, the Moho depths generally vary from ca. 28 km to ca. 12 km and the crustal thicknesses vary from ca. 24 km to ca. 6 km; a regional maximum exists around the Dongsha Island. Our gravity modeling has shown that the oceanic crust in the northern SCS is slightly thicker than normal oceanic crust. This situation could be ascribed to the post-spreading volcanism or underplating in this region.     

A stock assessment for Illex argentinus in Southwest Atlantic using an environmentally dependent surplus production model

The southern Patagonian stock(SPS) of Argentinian shortfin squid, Illex argentinus, is an economically important squid fishery in the Southwest Atlantic. Environmental conditions in the region play an important role in regulating the population dynamics of the I. argentinus population. This study develops an environmentally dependent surplus production(EDSP) model to evaluate the stock abundance of I. argentines during the period of 2000 to 2010. The environmental factors(favorable spawning habitat areas with sea surface temperature of 16–18°C) were assumed to be closely associated with carrying capacity(K) in the EDSP model. Deviance Information Criterion(DIC) values suggest that the estimated EDSP model with environmental factors fits the data better than a Schaefer surplus model without environmental factors under uniform and normal scenarios.The EDSP model estimated a maximum sustainable yield(MSY) from 351 600 t to 685 100 t and a biomass from 1 322 400 t to1 803 000 t. The fishing mortality coefficient of I. argentinus from 2000 to 2010 was smaller than the values of F_(0.1) and F_(MSY). Furthermore, the time series biomass plot of I. argentinus from 2000 to 2010 shows that the biomass of I.argentinus and this fishery were in a good state and not presently experiencing overfishing. This study suggests that the environmental conditions of the habitat should be considered within squid stock assessment and management.     

Mapping sediment acoustic impedance using remote sensing acoustic techniques in a shallow-water carbonate environment

 Real-time trackline plots of surficial sediment acoustic impedance delineate several sedimentary facies off Garden Key in the Dry Tortugas. The sea floor within a 6×6 km surveyed area consists of carbonate muds (silts), sands and shell, rock, and live corals. The 4-kHz acoustic data supports this finding by providing a pictographic representation of the distribution and structure of several sediment facies types. Plotting the gridded acoustic data with commercial mapping software (Surfer) provides a three-dimensional (3D) perspective of the bottom topography with a color contour map of surficial sediment impedance (upper 0.4 m) draped over the 3D surface.     

High‐temporal resolution fluvial sediment source fingerprinting with uncertainty: a Bayesian approach

This contribution addresses two developing areas of sediment fingerprinting research. Specifically, how to improve the temporal resolution of source apportionment estimates whilst minimizing analytical costs and, secondly, how to consistently quantify all perceived uncertainties associated with the sediment mixing model procedure. This first matter is tackled by using direct X‐ray fluorescence spectroscopy (XRFS) and diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) analyses of suspended particulate matter (SPM) covered filter papers in conjunction with automatic water samplers. This method enables SPM geochemistry to be quickly, accurately, inexpensively and non‐destructively monitored at high‐temporal resolution throughout the progression of numerous precipitation events. We then employed a Bayesian mixing model procedure to provide full characterization of spatial geochemical variability, instrument precision and residual error to yield a realistic and coherent assessment of the uncertainties associated with source apportionment estimates. Applying these methods to SPM data from the River Wensum catchment, UK, we have been able to apportion, with uncertainty, sediment contributions from eroding arable topsoils, damaged road verges and combined subsurface channel bank and agricultural field drain sources at 60‐ and 120‐minute resolution for the duration of five precipitation events. The results presented here demonstrate how combining Bayesian mixing models with the direct spectroscopic analysis of SPM‐covered filter papers can produce high‐temporal resolution source apportionment estimates that can assist with the appropriate targeting of sediment pollution mitigation measures at a catchment level. © 2015 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd.     

Transient soil response in a porous seabed with variable permeability

The soil permeability of many natural marine sediments decreases with depth because of consolidation under overburden pressure. This is accompanied by a decrease in porosity and void ratio that also affect the permeability. Conventional theories for wave-induced soil response have assumed a homogeneous porous seabed. This paper presents a new approach for the wave-induced response in a soil matrix, with variable permeability as a function of burial depth. The soil matrix considered is unsaturated and anisotropic, and is subject to a three-dimensional wave system. The pore pressure and effective stresses induced by such a system are obtained from a set of equations incorporating a variable permeability. Verification is available through reduction to the simple case of uniform permeability. The results indicate that the effect of variable soil permeability on pore pressure and vertical effective stress may be significant, especially in a gravelled seabed and for unsaturated sandy soils.     

Material flow analysis for an industry—A case study in packaging

The basic materials used in packaging are glass, metals (primarily aluminum and steel), an ever-growing range of plastics, paper and paperboard, wood, textiles for bags, and miscellaneous other materials (such as glues, inks, and other supplies). They are fabricated into rigid, semirigid, or flexible containers. The most common forms of these containers include cans, drums, bottles, cartons, boxes, bags, pouches, and wraps. Packaging products are, for the most part, low cost, bulky products that are manufactured close to their customers. There is virtually no import or export of packaging products. A material flow analysis can be developed that looks at all inputs to an industrial sector, inventories the losses in processing, and tracks the fate of the material after its useful life. An example is presented that identifies the material inputs to the packaging industry, and addresses the ultimate fate of the materials used.Correspondence should be directed to Earle B. Amey, U.S. Geological Survey, National Center 983, Reston, Virginia 20192.     

Dynamics of the Tropical Middle Atmosphere: A Tutorial Review*

Abstract

The general circulation of the tropical stratosphere, mesosphere and lowermost thermosphere is discussed at a tutorial level. Observations of the quasi‐biennial and semiannual oscillations by both in situ and satellite techniques are first reviewed. The basic dynamics controlling the zonal‐mean component of the circulation are then discussed. The role of radiative diabatic cooling in constraining the zonal‐mean circulation in the middle atmosphere is emphasized. It is shown that the effectiveness of this radiative constraint is reduced at low latitudes, allowing for the sustained mean flow accelerations over long periods of time characteristic of the quasi‐biennial and semiannual oscillations in the tropics.

The current view is that the dominant driving for the equatorial mean flow accelerations seen in the middle atmosphere derives from vertically‐propagating waves. This process is illustrated here in its simplest context, i.e. the Plumb (1977) model of the interaction of monochromatic internal gravity waves with the mean flow (based on earlier work of Lindzen and Holton, 1968; Holton and Lindzen, 1972). It is shown that the dynamics illustrated by this simple model can serve as the basis for an explanation of the quasi‐biennial oscillation.

The paper then describes some of recent developments in the theory of the quasi‐biennial and semiannual oscillations, including aspects related to the interaction between tropics and midlatitudes in the middle atmosphere. The paper concludes with a discussion of the effects of the long period dynamical variations in the tropical circulation on the chemical composition of the stratosphere.