Sedimentary DNA versus morphology in the analysis of diatom-environment relationships

The Arctic treeline ecotone is characterised by a steep vegetation gradient from arctic tundra to northern taiga forests, which is thought to influence the water chemistry of thermokarst lakes in this region. Environmentally sensitive diatoms respond to such ecological changes in terms of variation in diatom diversity and richness, which so far has only been documented by microscopic surveys. We applied next-generation sequencing to analyse the diatom composition of lake sediment DNA extracted from 32 lakes across the treeline in the Khatanga region, Siberia, using a short fragment of the rbcL chloroplast gene as a genetic barcode. We compared diatom richness and diversity obtained from the genetic approach with diatom counts from traditional microscopic analysis. Both datasets were employed to investigate diversity and relationships with environmental variables, using ordination methods. After effective filtering of the raw data, the two methods gave similar results for diatom richness and composition at the genus level (DNA 12 taxa; morphology 19 taxa), even though there was a much higher absolute number of sequences obtained per genetic sample (median 50,278), compared with microscopic counts (median 426). Dissolved organic carbon explained the highest percentage of variance in both datasets (14.2 % DNA; 18.7 % morphology), reflecting the compositional turnover of diatom assemblages along the tundra-taiga transition. Differences between the two approaches are mostly a consequence of the filtering process of genetic data and limitations of genetic references in the database, which restricted the determination of genetically identified sequence types to the genus level. The morphological approach, however, allowed identifications mostly to species level, which permits better ecological interpretation of the diatom data. Nevertheless, because of a rapidly increasing reference database, the genetic approach with sediment DNA will, in the future, enable reliable investigations of diatom composition from lake sediments that will have potential applications in both paleoecology and environmental monitoring.     

Climate,stream flow prediction and water management in northeast Brazil: societal trends and forecast value

We assess the potential benefits from innovative forecasts of the stream flows that replenish reservoirs in the semi-arid state of Ceará, Brazil. Such forecasts have many potential applications. In Ceará, they matter for both water-allocation and participatory-governance issues that echo global debates. Our qualitative analysis, based upon extensive fieldwork with farmers, agencies, politicians and other key actors in the water sector, stresses that forecast value changes as a society shifts. In the case of Ceará, current constraints on the use of these forecasts are likely to be reduced by shifts in water demand, water allocation in the agricultural Jaguaribe Valley, participatory processes for water allocation between this valley and the capital city of Fortaleza, and risk perception. Such changes in the water sector can also have major distributional impacts. Broad, Pfaff and Taddei equally share lead authorship.     

A bioindicator system for water quality on inshore coral reefs of the Great Barrier Reef

Responses of bioindicator candidates for water quality were quantified in two studies on inshore coral reefs of the Great Barrier Reef (GBR). In Study 1, 33 of the 38 investigated candidate indicators (including coral physiology, benthos composition, coral recruitment, macrobioeroder densities and FORAM index) showed significant relationships with a composite index of 13 water quality variables. These relationships were confirmed in Study 2 along four other water quality gradients (turbidity and chlorophyll). Changes in water quality led to multi-faceted shifts from phototrophic to heterotrophic benthic communities, and from diverse coral dominated communities to low-diversity communities dominated by macroalgae. Turbidity was the best predictor of biota; hence turbidity measurements remain essential to directly monitor water quality on the GBR, potentially complemented by our final calibrated 12 bioindicators. In combination, this bioindicator system may be used to assess changes in water quality, especially where direct water quality data are unavailable.     

Un réseau fluviatile d'âge Burdigalien terminal dans le Sud-Est de la France : remplissage,extension, âge,implications

An integrated study combining facies analysis, multiple group biostratigraphy, identification of depositional sequences and mapping has been conducted on the Miocene Molasse Basin of the external Alps (southeastern France). The filling of the basin is described as resulting from a succession of fluvial incisions subsequently filled during marine transgressions. The major incision is dated as Latest Burdigalian and the major transgression as Langhian. This revised interpretation of the Miocene physiographic evolution of the Molasse Basin implies a re-examination of previous stratigraphic correlations within the basin. To cite this article: D. Besson et al., C. R. Geoscience 337 (2005).     

Synthetic near Σ5 (210)/[100] grain boundary in YAG fabricated by direct bonding: structure and stability

Several macroscopic physical and chemical properties, such as rheology, elasticity, or transport properties are governed by grain boundary processes. An improved understanding of the structure and evolution of grain boundaries has thus become a key challenge in geosciences and material sciences. Here, we report the structure of near Σ5 (210)/[100] grain boundaries in Y₃Al₅O₁₂ (YAG), which were synthesised by the wafer direct bonding method. The produced grain boundaries were annealed at different temperatures, ranging from 673 to 1,873 K. The grain boundaries annealed at different temperatures are not distinguishable based on their flatness and apparent cohesiveness in high resolution TEM (HRTEM) micrographs, but show a considerable step in their mechanical stability at around 1,273 K, a temperature that corresponds to roughly half the melting temperature of YAG. This study further focuses on the effect of a slight misorientation of the two crystals on the grain boundary structure and we discuss if the boundary can reach a state of minimum energy configuration during annealing. Along the grain boundaries, we observed a long-range strain contrast with a periodicity of 40 nm, which has not been reported for high-angle grain boundaries so far. We conclude that this contrast is caused by faceting along the grain boundary plane, which is needed to achieve minimum energy configuration of the grain boundary plane.     

Governance arrangements targeting diversity in Europe: how New Public Management impacts working with social cohesion

This article analyses how policies to foster social cohesion within diverse and unequal urban contexts are affected by New Public Management and austerity policies. Based on the analysis of a handful of governance arrangements in three cities that differ in their institutional structure and diversity policy approaches (Copenhagen, Leipzig and Milan), it is shown that negative effects are quite widespread yet cushioned by a strong welfare state structure, solid local government and high priority given to the recognition of diversity. Nevertheless, the shift towards the application of market logic to social work reduces innovative potential, increases efforts spent on procedures and weakens public coordination.     

Potassium isotopic compositions of enstatite meteorites

Enstatite chondrites and aubrites are meteorites that show the closest similarities to the Earth in many isotope systems that undergo mass‐independent and mass‐dependent isotopic fractionations. Due to the analytical challenges to obtain high‐precision K isotopic compositions in the past, potential differences in K isotopic compositions between enstatite meteorites and the Earth remained uncertain. We report the first high‐precision K isotopic compositions of eight enstatite chondrites and four aubrites and find that there is a significant variation of K isotopic compositions among enstatite meteorites (from ?2.34‰ to ?0.18‰). However, K isotopic compositions of nearly all enstatite meteorites scatter around the bulk silicate earth (BSE) value. The average K isotopic composition of the eight enstatite chondrites (?0.47 ± 0.57‰) is indistinguishable from the BSE value (?0.48 ± 0.03‰), thus further corroborating the isotopic similarity between Earth's building blocks and enstatite meteorite precursors. We found no correlation of K isotopic compositions with the chemical groups, petrological types, shock degrees, and terrestrial weathering conditions; however, the variation of K isotopes among enstatite meteorite can be attributed to the parent‐body processing. Our sample of the main‐group aubrite MIL 13004 is exceptional and has an extremely light K isotopic composition (δ⁴¹K = ?2.34 ± 0.12‰). We attribute this unique K isotopic feature to the presence of abundant djerfisherite inclusions in our sample because this K‐bearing sulfide mineral is predicted to be enriched in ³⁹K during equilibrium exchange with silicates.     

Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef

Fine sediment dynamics were recorded in February 2007 in coastal waters of the Great Barrier Reef during a moderate flood of the Tully River. An estuarine circulation prevailed on the inner continental shelf with a surface seaward velocity peaking at 0.1 m s⁻¹ and a near-bottom landward flow peaking at 0.05 m s⁻¹. Much of the riverine mud originating from eroded soils was exported onto a 10 km wide coastal strip during the rising stage of the river flood in the first flush. In coastal waters, suspended sediment concentration peaked at 0.2 kg m⁻³ near the surface and 0.4 kg m⁻³ at 10 m depth during calm weather, and 0.5 kg m⁻³ near the surface and 2 kg m⁻³ at 10 m depth during strong winds when bottom sediment was resuspended. Diurnal irradiance at 4 m depth was almost zero for 10 days. The sedimentation rate averaged 254 (±33) g m⁻² d⁻¹ over the 28-day study period, and concentrations of dissolved and particulate nutrients originating from the river were high. The observed low irradiance would have prevented coral photosynthesis, while the sedimentation rate would have been lethal to some juvenile corals. The mud may ultimately be minnowed out over long periods, however, flushing of the mud occurs at time scales much longer than the flood event and the mud is likely to affect coral physiology for significant periods after the flood has subsided. The data show the need to better control erosion on farmed land for the conservation of coral reefs on the inner shelf of the Great Barrier Reef.     

Changes in octocoral communities and benthic cover along a water quality gradient in the reefs of Hong Kong

Cover of the main reef benthic groups, and abundances and taxonomic richness of octocorals were surveyed in the reefs of Hong Kong, and related to spatial and water quality gradients. Nutrient and particle concentrations are high throughout the area, with concentrations declining from the south towards the north-eastern region. Regression tree analyses showed that hard coral cover was most strongly related to water clarity, that macroalgal cover was highest in areas with high wave action and high water clarity, and that crustose coralline algae were negatively related to sedimentation. Octocoral communities (42 species in 23 genera) were dominated by zooxanthellae-free taxa; those few species with zooxanthellae were restricted to reefs with low wave action and high water clarity in the north-eastern region. The water quality gradient spans from conditions that are marginal for zooxanthellate octocorals while still supporting diverse scleractinian communities, towards an estuarine endpoint where zooxanthellate octocorals cease to exist and hard coral communities are reduced to a few resilient colonies. The data suggest that the types, abundances and richness of zooxanthellate octocorals, and the shift from zooxanthellate to azooxanthellate octocoral communities, may act as useful indicators of water clarity in regions where long-term water quality data are unavailable.